Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 146094508
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|146094508 receptor expressed in lymphoid tissues like 1
[Homo sapiens]
(271 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|146094508 receptor expressed in lymphoid tissues like 1 [Homo... 553 e-158
gi|146094506 receptor expressed in lymphoid tissues like 1 [Homo... 553 e-158
gi|23238200 RELT tumor necrosis factor receptor precursor [Homo ... 108 4e-24
gi|21361873 RELT tumor necrosis factor receptor precursor [Homo ... 108 4e-24
gi|194097448 RELT-like 2 [Homo sapiens] 106 2e-23
gi|194097446 RELT-like 2 [Homo sapiens] 106 2e-23
gi|134031945 SCO-spondin [Homo sapiens] 34 0.15
gi|22218339 hypothetical protein LOC90362 [Homo sapiens] 33 0.26
gi|116517292 cut-like 2 [Homo sapiens] 33 0.34
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 33 0.34
gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo... 33 0.34
gi|154813204 inhibin beta B subunit preproprotein [Homo sapiens] 32 0.45
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 32 0.45
gi|4759208 TAO kinase 2 isoform 1 [Homo sapiens] 32 0.59
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens] 32 0.59
gi|55750053 atrophin-1 [Homo sapiens] 32 0.59
gi|55750041 atrophin-1 [Homo sapiens] 32 0.59
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 32 0.59
gi|118498339 EMI domain containing 2 [Homo sapiens] 32 0.59
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 32 0.77
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 32 0.77
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 32 0.77
gi|17402900 far upstream element-binding protein [Homo sapiens] 32 0.77
gi|6382071 diaphanous 2 isoform 12C [Homo sapiens] 32 0.77
gi|5803003 diaphanous 2 isoform 156 [Homo sapiens] 32 0.77
gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens] 32 0.77
gi|29826341 calmodulin binding transcription activator 2 [Homo s... 32 0.77
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 31 1.0
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 31 1.0
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 31 1.0
>gi|146094508 receptor expressed in lymphoid tissues like 1 [Homo
sapiens]
Length = 271
Score = 553 bits (1426), Expect = e-158
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MAPRALPGSAVLAAAVFVGGAVSSPLVAPDNGSSRTLHSRTETTPSPSNDTGNGHPEYIA 60
MAPRALPGSAVLAAAVFVGGAVSSPLVAPDNGSSRTLHSRTETTPSPSNDTGNGHPEYIA
Sbjct: 1 MAPRALPGSAVLAAAVFVGGAVSSPLVAPDNGSSRTLHSRTETTPSPSNDTGNGHPEYIA 60
Query: 61 YALVPVFFIMGLFGVLICHLLKKKGYRCTTEAEQDIEEEKVEKIELNDSVNENSDTVGQI 120
YALVPVFFIMGLFGVLICHLLKKKGYRCTTEAEQDIEEEKVEKIELNDSVNENSDTVGQI
Sbjct: 61 YALVPVFFIMGLFGVLICHLLKKKGYRCTTEAEQDIEEEKVEKIELNDSVNENSDTVGQI 120
Query: 121 VHYIMKNEANADVLKAMVADNSLYDPESPVTPSTPGSPPVSPGPLSPGGTPGKHVCGHHL 180
VHYIMKNEANADVLKAMVADNSLYDPESPVTPSTPGSPPVSPGPLSPGGTPGKHVCGHHL
Sbjct: 121 VHYIMKNEANADVLKAMVADNSLYDPESPVTPSTPGSPPVSPGPLSPGGTPGKHVCGHHL 180
Query: 181 HTVGGVVERDVCHRCRHKRWHFIKPTNKSRESRPRRQGEVTVLSVGRFRVTKVEHKSNQK 240
HTVGGVVERDVCHRCRHKRWHFIKPTNKSRESRPRRQGEVTVLSVGRFRVTKVEHKSNQK
Sbjct: 181 HTVGGVVERDVCHRCRHKRWHFIKPTNKSRESRPRRQGEVTVLSVGRFRVTKVEHKSNQK 240
Query: 241 ERRSLMSVSGAETVNGEVPATPVKRERSGTE 271
ERRSLMSVSGAETVNGEVPATPVKRERSGTE
Sbjct: 241 ERRSLMSVSGAETVNGEVPATPVKRERSGTE 271
>gi|146094506 receptor expressed in lymphoid tissues like 1 [Homo
sapiens]
Length = 271
Score = 553 bits (1426), Expect = e-158
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MAPRALPGSAVLAAAVFVGGAVSSPLVAPDNGSSRTLHSRTETTPSPSNDTGNGHPEYIA 60
MAPRALPGSAVLAAAVFVGGAVSSPLVAPDNGSSRTLHSRTETTPSPSNDTGNGHPEYIA
Sbjct: 1 MAPRALPGSAVLAAAVFVGGAVSSPLVAPDNGSSRTLHSRTETTPSPSNDTGNGHPEYIA 60
Query: 61 YALVPVFFIMGLFGVLICHLLKKKGYRCTTEAEQDIEEEKVEKIELNDSVNENSDTVGQI 120
YALVPVFFIMGLFGVLICHLLKKKGYRCTTEAEQDIEEEKVEKIELNDSVNENSDTVGQI
Sbjct: 61 YALVPVFFIMGLFGVLICHLLKKKGYRCTTEAEQDIEEEKVEKIELNDSVNENSDTVGQI 120
Query: 121 VHYIMKNEANADVLKAMVADNSLYDPESPVTPSTPGSPPVSPGPLSPGGTPGKHVCGHHL 180
VHYIMKNEANADVLKAMVADNSLYDPESPVTPSTPGSPPVSPGPLSPGGTPGKHVCGHHL
Sbjct: 121 VHYIMKNEANADVLKAMVADNSLYDPESPVTPSTPGSPPVSPGPLSPGGTPGKHVCGHHL 180
Query: 181 HTVGGVVERDVCHRCRHKRWHFIKPTNKSRESRPRRQGEVTVLSVGRFRVTKVEHKSNQK 240
HTVGGVVERDVCHRCRHKRWHFIKPTNKSRESRPRRQGEVTVLSVGRFRVTKVEHKSNQK
Sbjct: 181 HTVGGVVERDVCHRCRHKRWHFIKPTNKSRESRPRRQGEVTVLSVGRFRVTKVEHKSNQK 240
Query: 241 ERRSLMSVSGAETVNGEVPATPVKRERSGTE 271
ERRSLMSVSGAETVNGEVPATPVKRERSGTE
Sbjct: 241 ERRSLMSVSGAETVNGEVPATPVKRERSGTE 271
>gi|23238200 RELT tumor necrosis factor receptor precursor [Homo
sapiens]
Length = 430
Score = 108 bits (271), Expect = 4e-24
Identities = 80/251 (31%), Positives = 118/251 (47%), Gaps = 42/251 (16%)
Query: 44 TPSPSNDTGNGHPE-----YIAYALVPVFFIMGLFGVLICHLLKKKGYRCTTEAEQDIEE 98
T P N T G PE Y A+VPVF +MGL G+L+C+LLK+KGY CT E
Sbjct: 144 TRQPGNGTRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGP 203
Query: 99 ----EKVEKIELNDSVNENSDTVGQIVHYIMKNEANADVLKAMVADNSLYDPESPVTPST 154
+ + NE DT+G +V I + + NA L+ ++ + Y + V S
Sbjct: 204 GGGGSGINPAYRTEDANE--DTIGVLVRLITEKKENAAALEELLKE---YHSKQLVQTS- 257
Query: 155 PGSPPVSPGPLSPGGTPGKHVC--GHHLHTVGGV--VERDVCHRCRHKRWHFI------- 203
PVS P +P P H+C HHLHTV G+ + C RC K+W +
Sbjct: 258 --HRPVSKLPPAPPNVP--HICPHRHHLHTVQGLASLSGPCCSRCSQKKWPEVLLSPEAV 313
Query: 204 -----------KPTNKSRE-SRPRRQGEVTVLSVGRFRVTKVEHKSNQKERRSLMSVSGA 251
PT + ++ RQGE+T+LSVGRFRV ++ + + +++ A
Sbjct: 314 AATTPVPSLLPNPTRVPKAGAKAGRQGEITILSVGRFRVARIPEQRTSSMVSEVKTITEA 373
Query: 252 ETVNGEVPATP 262
G++P +P
Sbjct: 374 GPSWGDLPDSP 384
>gi|21361873 RELT tumor necrosis factor receptor precursor [Homo
sapiens]
Length = 430
Score = 108 bits (271), Expect = 4e-24
Identities = 80/251 (31%), Positives = 118/251 (47%), Gaps = 42/251 (16%)
Query: 44 TPSPSNDTGNGHPE-----YIAYALVPVFFIMGLFGVLICHLLKKKGYRCTTEAEQDIEE 98
T P N T G PE Y A+VPVF +MGL G+L+C+LLK+KGY CT E
Sbjct: 144 TRQPGNGTRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGP 203
Query: 99 ----EKVEKIELNDSVNENSDTVGQIVHYIMKNEANADVLKAMVADNSLYDPESPVTPST 154
+ + NE DT+G +V I + + NA L+ ++ + Y + V S
Sbjct: 204 GGGGSGINPAYRTEDANE--DTIGVLVRLITEKKENAAALEELLKE---YHSKQLVQTS- 257
Query: 155 PGSPPVSPGPLSPGGTPGKHVC--GHHLHTVGGV--VERDVCHRCRHKRWHFI------- 203
PVS P +P P H+C HHLHTV G+ + C RC K+W +
Sbjct: 258 --HRPVSKLPPAPPNVP--HICPHRHHLHTVQGLASLSGPCCSRCSQKKWPEVLLSPEAV 313
Query: 204 -----------KPTNKSRE-SRPRRQGEVTVLSVGRFRVTKVEHKSNQKERRSLMSVSGA 251
PT + ++ RQGE+T+LSVGRFRV ++ + + +++ A
Sbjct: 314 AATTPVPSLLPNPTRVPKAGAKAGRQGEITILSVGRFRVARIPEQRTSSMVSEVKTITEA 373
Query: 252 ETVNGEVPATP 262
G++P +P
Sbjct: 374 GPSWGDLPDSP 384
>gi|194097448 RELT-like 2 [Homo sapiens]
Length = 303
Score = 106 bits (265), Expect = 2e-23
Identities = 75/190 (39%), Positives = 101/190 (53%), Gaps = 19/190 (10%)
Query: 55 HPEYIAYALVPVFFIMGLFGVLICHLLKKKGYRCTTEAEQDIEEEKVEKIELNDSVNENS 114
H Y+ + LV VFF+MGL G +ICH+LKKKGYRC T + ++ +++ E +D N
Sbjct: 13 HGLYMLFLLVLVFFLMGLVGFMICHVLKKKGYRCRTSRGSEPDDAQLQPPEDDDM---NE 69
Query: 115 DTVGQIVHYIMKNEANADVLKAMVADNSLYDPESPVTPSTPGSPPVSPGPLSPGGTPGKH 174
DTV +IV I++NEANA+ LK M+ D+ + E V S+ V G P H
Sbjct: 70 DTVERIVRCIIQNEANAEALKEMLGDS---EGEGTVQLSS-----VDATSSLQDGAPSHH 121
Query: 175 VCGHHLHTVGGVVERDVCHRCRHKRWHFIKP-TNKSRESRPRRQGEVTVLSVGRFRVTKV 233
HTV H R KR ++ +K +SRP R GE TV SVGRFRVT +
Sbjct: 122 ------HTVHLGSAAPCLHCSRSKRPPLVRQGRSKEGKSRP-RTGETTVFSVGRFRVTHI 174
Query: 234 EHKSNQKERR 243
E + E R
Sbjct: 175 EKRYGLHEHR 184
>gi|194097446 RELT-like 2 [Homo sapiens]
Length = 303
Score = 106 bits (265), Expect = 2e-23
Identities = 75/190 (39%), Positives = 101/190 (53%), Gaps = 19/190 (10%)
Query: 55 HPEYIAYALVPVFFIMGLFGVLICHLLKKKGYRCTTEAEQDIEEEKVEKIELNDSVNENS 114
H Y+ + LV VFF+MGL G +ICH+LKKKGYRC T + ++ +++ E +D N
Sbjct: 13 HGLYMLFLLVLVFFLMGLVGFMICHVLKKKGYRCRTSRGSEPDDAQLQPPEDDDM---NE 69
Query: 115 DTVGQIVHYIMKNEANADVLKAMVADNSLYDPESPVTPSTPGSPPVSPGPLSPGGTPGKH 174
DTV +IV I++NEANA+ LK M+ D+ + E V S+ V G P H
Sbjct: 70 DTVERIVRCIIQNEANAEALKEMLGDS---EGEGTVQLSS-----VDATSSLQDGAPSHH 121
Query: 175 VCGHHLHTVGGVVERDVCHRCRHKRWHFIKP-TNKSRESRPRRQGEVTVLSVGRFRVTKV 233
HTV H R KR ++ +K +SRP R GE TV SVGRFRVT +
Sbjct: 122 ------HTVHLGSAAPCLHCSRSKRPPLVRQGRSKEGKSRP-RTGETTVFSVGRFRVTHI 174
Query: 234 EHKSNQKERR 243
E + E R
Sbjct: 175 EKRYGLHEHR 184
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 33.9 bits (76), Expect = 0.15
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 146 PESPVTPSTPGSPPVSPGPLSPGGT-PGKHVCGHHLHTVGGVVERDVC 192
P PVTP+TP V+PGP P PG+ C +G V + VC
Sbjct: 2367 PPHPVTPATPAGQSVAPGPFPPVQCGPGQTPC----EVLGCVEQAQVC 2410
>gi|22218339 hypothetical protein LOC90362 [Homo sapiens]
Length = 370
Score = 33.1 bits (74), Expect = 0.26
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 131 ADVLKAMVADNSLYDPESPVTPSTPGSPPVSPGPLSPGGTPGKHVCGHHLHTVGGV 186
AD K + + + + PV P+ PPV P G+P V G+H T GV
Sbjct: 56 ADKAKYVKSQEVINAKQEPVKPAVLAKPPVCPAAKRALGSPTLKVFGNHAKTESGV 111
>gi|116517292 cut-like 2 [Homo sapiens]
Length = 1486
Score = 32.7 bits (73), Expect = 0.34
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 91 EAEQDIEEEKVEKIELNDSVNENSDTVG-----------QIVHYIMKNEANADVLKAMVA 139
++E + ++ V+++EL + ENS + + + + EA + +
Sbjct: 1262 DSETEDQKPTVKELELQEGPEENSTPLTTQDKAQVRIKQEQMEEDAEEEAGSQPQDSGEL 1321
Query: 140 DNSLYDP--ESPVTPSTPGSPPVSPGPLSPGGT 170
D P E P P G P V+PGPL PGG+
Sbjct: 1322 DKGQGPPKEEHPDPPGNDGLPKVAPGPLLPGGS 1354
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 32.7 bits (73), Expect = 0.34
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 85 GYRCTTEAEQDIEEEKVEKIELNDSVNENSDTVGQIVHYIMKNEANADVLKAMVADNSLY 144
G C + EQ +++E+ EK E + E + + V M A + K
Sbjct: 350 GSPCWKKQEQKLDDEEEEKKEEEEKDKEGEEKEERAVAEEMMPAAEKEEAKL-------- 401
Query: 145 DPESPVTPSTPGSPPVSPGP 164
P P+TP P PP P P
Sbjct: 402 -PPPPLTPPAPSPPPPLPPP 420
>gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo
sapiens]
Length = 606
Score = 32.7 bits (73), Expect = 0.34
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 146 PESPVTPSTPGSPPVSPGPLSPGGTPG 172
P+ + P P PP SPGP P G PG
Sbjct: 539 PKGDIGPPGPEGPPGSPGPSGPQGKPG 565
>gi|154813204 inhibin beta B subunit preproprotein [Homo sapiens]
Length = 407
Score = 32.3 bits (72), Expect = 0.45
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 148 SPVTPSTPGSPPVSPGPLSPGGT 170
SP P TP +PP P P SPGG+
Sbjct: 29 SPTPPPTPAAPPPPPPPGSPGGS 51
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 32.3 bits (72), Expect = 0.45
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 118 GQIVHYIMKNEANADVLKAMVADNSLYDPESPVTPSTPGSPPVSPGPLSPG 168
G + Y+ E + L PE PSTP +PP P P +PG
Sbjct: 1384 GDVTVYLFDQETPTNELSVQAP------PEGDTDPSTPPAPPTPPHPATPG 1428
>gi|4759208 TAO kinase 2 isoform 1 [Homo sapiens]
Length = 1049
Score = 32.0 bits (71), Expect = 0.59
Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 16/168 (9%)
Query: 91 EAEQDIEEEKVEKIELNDS--VNENSDTVGQIVHYIMKNEANADVLKAMVADNSLYD-PE 147
E E++ EEE+ E E + + E TV +++ ++ + ++LYD P
Sbjct: 381 EEEEEEEEEEEEGPEAREMAMMQEGEHTV----------TSHSSIIHRLPGSDNLYDDPY 430
Query: 148 SPVTPSTPGSPPVSPGPLSPGGTPGKHV-CGHHLHTVGGVVERDVCHRCRHKRWHFIKPT 206
P +P PP +P P S + + C + H V + +
Sbjct: 431 QPEITPSPLQPPAAPAPTSTTSSARRRAYCRNRDHFATIRTASLVSRQIQEHEQDSALRE 490
Query: 207 NKSRESRPRRQGEVTVLSV-GRFRVTKVEHKSN-QKERRSLMSVSGAE 252
S R RRQ + +L++ R R + EH + Q+E + + GAE
Sbjct: 491 QLSGYKRMRRQHQKQLLALESRLRGEREEHSARLQRELEAQRAGFGAE 538
>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
Length = 1235
Score = 32.0 bits (71), Expect = 0.59
Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 16/168 (9%)
Query: 91 EAEQDIEEEKVEKIELNDS--VNENSDTVGQIVHYIMKNEANADVLKAMVADNSLYD-PE 147
E E++ EEE+ E E + + E TV +++ ++ + ++LYD P
Sbjct: 381 EEEEEEEEEEEEGPEAREMAMMQEGEHTV----------TSHSSIIHRLPGSDNLYDDPY 430
Query: 148 SPVTPSTPGSPPVSPGPLSPGGTPGKHV-CGHHLHTVGGVVERDVCHRCRHKRWHFIKPT 206
P +P PP +P P S + + C + H V + +
Sbjct: 431 QPEITPSPLQPPAAPAPTSTTSSARRRAYCRNRDHFATIRTASLVSRQIQEHEQDSALRE 490
Query: 207 NKSRESRPRRQGEVTVLSV-GRFRVTKVEHKSN-QKERRSLMSVSGAE 252
S R RRQ + +L++ R R + EH + Q+E + + GAE
Sbjct: 491 QLSGYKRMRRQHQKQLLALESRLRGEREEHSARLQRELEAQRAGFGAE 538
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 32.0 bits (71), Expect = 0.59
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 149 PVTPST--PGSPPVSPGPLSPGGTPG 172
P P T PGSP V PGPL P G G
Sbjct: 679 PAGPGTFKPGSPTVGPGPLPPAGPSG 704
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 32.0 bits (71), Expect = 0.59
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 149 PVTPST--PGSPPVSPGPLSPGGTPG 172
P P T PGSP V PGPL P G G
Sbjct: 679 PAGPGTFKPGSPTVGPGPLPPAGPSG 704
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 32.0 bits (71), Expect = 0.59
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 146 PESPVTPSTPGSPPVSPGPLSPGGTPG 172
P + P+TP S P SP P SP TPG
Sbjct: 1018 PPAYAYPATPSSHPTSPPPASPPPTPG 1044
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 32.0 bits (71), Expect = 0.59
Identities = 18/51 (35%), Positives = 20/51 (39%)
Query: 134 LKAMVADNSLYDPESPVTPSTPGSPPVSPGPLSPGGTPGKHVCGHHLHTVG 184
L + + D L P P P PP GP P GTPG TVG
Sbjct: 289 LASAIVDTVLAGVPGPRGPPGPPGPPGPRGPPGPPGTPGSQGLAGERGTVG 339
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 31.6 bits (70), Expect = 0.77
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 145 DPESPVTP-STPGSPPVSPGPLSPGGTPGK 173
DP +P TP PGSPP SP P S G G+
Sbjct: 1182 DPPAPRTPPEPPGSPPSSPPPASLGRPEGE 1211
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 31.6 bits (70), Expect = 0.77
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
Query: 148 SPVTPSTPGSP-----PVSPGPLSPGGTPGKH 174
SP TP +PG+P P+SPGP+ P +P H
Sbjct: 806 SPGTPLSPGNPFSPGTPISPGPIFPITSPPCH 837
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 31.6 bits (70), Expect = 0.77
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 147 ESPVTPSTPGSP--PVSPGPLSPGGTPGK 173
E + P PG P P SPGP P G PGK
Sbjct: 1415 EGGIAPGEPGLPGLPGSPGPQGPVGPPGK 1443
Score = 28.9 bits (63), Expect = 5.0
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 151 TPSTPGSPPVSPGPLSPGGTPG 172
+P PGSP + PGP+ P G PG
Sbjct: 2273 SPGVPGSPGL-PGPVGPKGEPG 2293
>gi|17402900 far upstream element-binding protein [Homo sapiens]
Length = 644
Score = 31.6 bits (70), Expect = 0.77
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 91 EAEQDIEEEKVEKIELNDSVNENSDTVGQIVHYIMKNEANADVLKAMVADNSLYDPESPV 150
E + I ++ +IEL + N+D + I D + ++ + + P +P+
Sbjct: 397 ETIKSISQQSGARIELQRNPPPNADP-NMKLFTIRGTPQQIDYARQLI-EEKIGGPVNPL 454
Query: 151 TPSTPGSPPVSPGPLSPGGTPG 172
P P P PGP P G PG
Sbjct: 455 GPPVPHGPHGVPGPHGPPGPPG 476
>gi|6382071 diaphanous 2 isoform 12C [Homo sapiens]
Length = 1096
Score = 31.6 bits (70), Expect = 0.77
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 91 EAEQDIEEEKVEKIELNDSVNENSDTVGQIVHYIMKNEANADVLKAMVADNSLYDPESPV 150
E + +EE + E + + + + ++ I + A VL + S P P
Sbjct: 499 EFSKKFDEEFTARQEAQAELQKRDEKIKELEAEIQQLRTQAQVLSS-----SSGIPGPPA 553
Query: 151 TPSTP--GSPPVSPGPLSPGGTP 171
P P G PP P P PGG P
Sbjct: 554 APPLPGVGPPPPPPAPPLPGGAP 576
>gi|5803003 diaphanous 2 isoform 156 [Homo sapiens]
Length = 1101
Score = 31.6 bits (70), Expect = 0.77
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 91 EAEQDIEEEKVEKIELNDSVNENSDTVGQIVHYIMKNEANADVLKAMVADNSLYDPESPV 150
E + +EE + E + + + + ++ I + A VL + S P P
Sbjct: 499 EFSKKFDEEFTARQEAQAELQKRDEKIKELEAEIQQLRTQAQVLSS-----SSGIPGPPA 553
Query: 151 TPSTP--GSPPVSPGPLSPGGTP 171
P P G PP P P PGG P
Sbjct: 554 APPLPGVGPPPPPPAPPLPGGAP 576
>gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]
Length = 1388
Score = 31.6 bits (70), Expect = 0.77
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 16/94 (17%)
Query: 19 GGAVSSPLVAPDNGSSRTLHSRTETTPSPSNDTGNGHPEYIAYALVPVFFIMGLFGVLIC 78
G A +S + +GS T H T TTP +T P+ VP F G+ +C
Sbjct: 1103 GEASTSHINITASGSKPTSHM-TATTP----ETAKPPPKE-----VPSF---GMLTPALC 1149
Query: 79 HLLKKKGYR---CTTEAEQDIEEEKVEKIELNDS 109
+LL+++ C+ E E +I+EEK K L+DS
Sbjct: 1150 YLLEEQEAARGSCSVEEEMEIDEEKQMKGFLDDS 1183
>gi|29826341 calmodulin binding transcription activator 2 [Homo
sapiens]
Length = 1202
Score = 31.6 bits (70), Expect = 0.77
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 148 SPVTPSTPGSPPVSPGPLSPGGTPGK 173
+P PS P SPP SP PL P G+
Sbjct: 459 APPIPSPPPSPPPSPAPLEPSSRVGR 484
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 31.2 bits (69), Expect = 1.0
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 131 ADVLKAMVADNSLYDPESP--VTPSTPGSPPVSPGPLSPGGTPG 172
A+ +K D+ + P+ P + P P P PGP+ P G PG
Sbjct: 507 ANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPG 550
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 31.2 bits (69), Expect = 1.0
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 131 ADVLKAMVADNSLYDPESP--VTPSTPGSPPVSPGPLSPGGTPG 172
A+ +K D+ + P+ P + P P P PGP+ P G PG
Sbjct: 507 ANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPG 550
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 31.2 bits (69), Expect = 1.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 141 NSLYDPESPVTPSTPGSPPVSPGPLSP 167
NS PESP+TP P P +P P +P
Sbjct: 1575 NSFEKPESPLTPGPPHPLPDTPAPATP 1601
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,572,084
Number of Sequences: 37866
Number of extensions: 670054
Number of successful extensions: 5712
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 4767
Number of HSP's gapped (non-prelim): 1079
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.