RGAG1 23746

Name: RGAG1	Sequence: fasta or formatted (1388aa)		NCBI GI: 24308215
Description: retrotransposon gag domain containing 1		Referenced in: Protein Composition and Structure DNA Transposon and Retrovirus-related Sequences
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.3 143 2 C cysteine 0.9 12 1 D aspartate 3.0 42 2 E glutamate 4.5 62 3 F phenylalanine 1.1 15 1 G glycine 7.2 100 2 H histidine 1.3 18 2 I isoleucine 1.9 27 1 K lysine 2.6 36 1 L leucine 8.1 112 3 M methionine 10.4 145 2 N asparagine 1.4 19 2 P proline 8.9 123 3 Q glutamine 3.8 53 3 R arginine 3.9 54 2 S serine 15.9 220 3 T threonine 9.8 136 3 V valine 4.1 57 2 W tryptophan 0.3 4 1 Y tyrosine 0.7 10 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 retrotransposon gag domain containing 1 MUC17 0.050 mucin 17 MUC4 0.044 mucin 4 isoform a MUC12 0.032 PREDICTED: mucin 12 MUC12 0.032 PREDICTED: mucin 12, cell surface associated MUC5B 0.030 mucin 5, subtype B, tracheobronchial MUC16 0.030 mucin 16 HCFC1 0.029 host cell factor 1 LOC100131514 0.028 PREDICTED: similar to hCG1747327, partial NACA 0.027 nascent polypeptide-associated complex alpha subuni... MUC12 0.027 PREDICTED: mucin 12 MUC5AC 0.027 mucin 5AC LOC100133756 0.025 PREDICTED: hypothetical protein, partial MUC3A 0.025 PREDICTED: mucin 3A, intestinal MUC6 0.024 mucin 6, gastric MUC2 0.023 mucin 2 precursor LOC729792 0.023 PREDICTED: hypothetical protein LOC100294136 0.023 PREDICTED: hypothetical protein LOC100294091 0.023 PREDICTED: hypothetical protein SRCAP 0.023 Snf2-related CBP activator protein FLJ22184 0.022 PREDICTED: hypothetical protein FLJ22184 FLJ22184 0.021 PREDICTED: hypothetical protein LOC80164 LOC729792 0.021 PREDICTED: hypothetical protein LOC730401 0.021 PREDICTED: hypothetical protein LOC100294238 0.021 PREDICTED: hypothetical protein LOC100294204 0.021 PREDICTED: hypothetical protein FLJ22184 0.021 PREDICTED: hypothetical protein FLJ22184 LOC729792 0.021 PREDICTED: hypothetical protein LOC100294501 0.021 PREDICTED: hypothetical protein LOC100294249 0.020 PREDICTED: hypothetical protein XP_002344067 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.