Guide to the Human Genome
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Name: RGAG1 Sequence: fasta or formatted (1388aa) NCBI GI: 24308215
Description:

retrotransposon gag domain containing 1

Referenced in:

Protein Composition and Structure
DNA Transposon and Retrovirus-related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3        143           2
 C cysteine            0.9         12           1
 D aspartate           3.0         42           2
 E glutamate           4.5         62           3
 F phenylalanine       1.1         15           1
 G glycine             7.2        100           2
 H histidine           1.3         18           2
 I isoleucine          1.9         27           1
 K lysine              2.6         36           1
 L leucine             8.1        112           3
 M methionine         10.4        145           2
 N asparagine          1.4         19           2
 P proline             8.9        123           3
 Q glutamine           3.8         53           3
 R arginine            3.9         54           2
 S serine             15.9        220           3
 T threonine           9.8        136           3
 V valine              4.1         57           2
 W tryptophan          0.3          4           1
 Y tyrosine            0.7         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retrotransposon gag domain containing 1 
MUC17                 0.050   mucin 17 
MUC4                  0.044   mucin 4 isoform a 
MUC12                 0.032   PREDICTED: mucin 12 
MUC12                 0.032   PREDICTED: mucin 12, cell surface associated 
MUC5B                 0.030   mucin 5, subtype B, tracheobronchial 
MUC16                 0.030   mucin 16 
HCFC1                 0.029   host cell factor 1 
LOC100131514          0.028   PREDICTED: similar to hCG1747327, partial 
NACA                  0.027   nascent polypeptide-associated complex alpha subuni...
MUC12                 0.027   PREDICTED: mucin 12 
MUC5AC                0.027   mucin 5AC 
LOC100133756          0.025   PREDICTED: hypothetical protein, partial 
MUC3A                 0.025   PREDICTED: mucin 3A, intestinal 
MUC6                  0.024   mucin 6, gastric 
MUC2                  0.023   mucin 2 precursor 
LOC729792             0.023   PREDICTED: hypothetical protein 
LOC100294136          0.023   PREDICTED: hypothetical protein 
LOC100294091          0.023   PREDICTED: hypothetical protein 
SRCAP                 0.023   Snf2-related CBP activator protein 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.021   PREDICTED: hypothetical protein LOC80164 
LOC729792             0.021   PREDICTED: hypothetical protein 
LOC730401             0.021   PREDICTED: hypothetical protein 
LOC100294238          0.021   PREDICTED: hypothetical protein 
LOC100294204          0.021   PREDICTED: hypothetical protein 
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
LOC729792             0.021   PREDICTED: hypothetical protein 
LOC100294501          0.021   PREDICTED: hypothetical protein 
LOC100294249          0.020   PREDICTED: hypothetical protein XP_002344067 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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