RTTN 4034

Name: RTTN	Sequence: fasta or formatted (2226aa)		NCBI GI: 145046269
Description: rotatin		Referenced in: Left-Right Axis
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.5 145 3 C cysteine 3.0 67 2 D aspartate 4.3 96 2 E glutamate 5.9 132 2 F phenylalanine 3.3 73 2 G glycine 3.7 83 2 H histidine 3.3 73 2 I isoleucine 5.0 112 2 K lysine 5.2 115 3 L leucine 16.6 370 3 M methionine 2.4 53 2 N asparagine 3.8 84 1 P proline 4.8 106 2 Q glutamine 4.7 104 2 R arginine 3.8 85 2 S serine 9.6 213 3 T threonine 4.9 110 3 V valine 6.1 135 2 W tryptophan 1.2 27 1 Y tyrosine 1.9 43 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 rotatin MUC6 0.003 mucin 6, gastric AFF4 0.002 ALL1 fused gene from 5q31 CTNNBL1 0.002 beta catenin-like 1 YEATS2 0.002 YEATS domain containing 2 CENPJ 0.002 centromere protein J IQSEC2 0.002 IQ motif and Sec7 domain 2 isoform 2 IQSEC2 0.002 IQ motif and Sec7 domain 2 isoform1 ANKHD1 0.002 ankyrin repeat and KH domain containing 1 isoform 1 ... ANKHD1-EIF4EBP3 0.002 ANKHD1-EIF4EBP3 protein DNHD1 0.002 dynein heavy chain domain 1 isoform 1 F5 0.002 coagulation factor V precursor DNHD1 0.002 dynein heavy chain domain 1 isoform 2 FLJ37078 0.002 hypothetical protein LOC222183 LIN9 0.002 lin-9 homolog FLJ22184 0.002 PREDICTED: hypothetical protein FLJ22184 TBX5 0.002 T-box 5 isoform 3 TBX5 0.002 T-box 5 isoform 1 TBX5 0.002 T-box 5 isoform 1 KCNH8 0.002 potassium voltage-gated channel, subfamily H, member... APC 0.002 adenomatous polyposis coli APC 0.002 adenomatous polyposis coli APC 0.002 adenomatous polyposis coli LOC100294501 0.002 PREDICTED: hypothetical protein C9orf144B 0.002 hypothetical protein LOC259308 C16orf3 0.002 hypothetical protein LOC750 CROCC 0.002 ciliary rootlet coiled-coil ARL6IP4 0.002 SRp25 nuclear protein isoform 1 BAHCC1 0.002 BAH domain and coiled-coil containing 1 ZC3H6 0.002 zinc finger CCCH-type domain containing 6 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.