Guide to the Human Genome
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Name: TBX5 Sequence: fasta or formatted (518aa) NCBI GI: 31652232
Description:

T-box 5 isoform 1

Referenced in:

T Box Family

Other entries for this name:
alt mRNA [518aa] T-box 5 isoform 1
alt prot [468aa] T-box 5 isoform 3
alt prot [349aa] T-box 5 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         31           2
 C cysteine            1.7          9           1
 D aspartate           3.9         20           2
 E glutamate           5.6         29           3
 F phenylalanine       3.9         20           1
 G glycine             6.2         32           1
 H histidine           5.0         26           1
 I isoleucine          2.5         13           2
 K lysine              5.2         27           2
 L leucine             6.6         34           2
 M methionine          3.5         18           1
 N asparagine          3.5         18           2
 P proline             9.8         51           3
 Q glutamine           6.0         31           3
 R arginine            4.1         21           2
 S serine             10.8         56           2
 T threonine           5.8         30           2
 V valine              5.2         27           2
 W tryptophan          1.0          5           1
 Y tyrosine            3.9         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-box 5 isoform 1 
TBX5                  1.000   T-box 5 isoform 1 
TBX5                  0.904   T-box 5 isoform 3 
TBX5                  0.622   T-box 5 isoform 2 
TBX4                  0.462   T-box 4 
TBX3                  0.213   T-box 3 protein isoform 1 
TBX2                  0.209   T-box 2 
TBX1                  0.205   T-box 1 isoform B 
TBX20                 0.204   T-box transcription factor TBX20 
TBX1                  0.204   T-box 1 isoform C 
TBX1                  0.203   T-box 1 isoform A 
TBX6                  0.203   T-box 6 
TBX3                  0.202   T-box 3 protein isoform 2 
TBX10                 0.195   T-box 10 
TBX18                 0.191   T-box 18 
TBX15                 0.190   T-box 15 
T                     0.174   transcription factor T 
MGA                   0.172   MAX gene associated 
TBX21                 0.165   T-box 21 
TBX22                 0.165   T-box 22 isoform 1 
TBX22                 0.165   T-box 22 isoform 1 
TBR1                  0.162   T-box, brain, 1 
TBX19                 0.159   T-box 19 
EOMES                 0.158   eomesodermin 
TBX22                 0.126   T-box 22 isoform 2 
LOC642132             0.017   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.017   PREDICTED: similar to roundabout 1 isoform 2 
ROBO1                 0.016   roundabout 1 isoform d 
ROBO1                 0.016   roundabout 1 isoform c 
ROBO1                 0.016   roundabout 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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