Guide to the Human Genome
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Name: CENPJ Sequence: fasta or formatted (1338aa) NCBI GI: 130980075
Description:

centromere protein J

Referenced in:

Centromere Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         63           3
 C cysteine            1.6         21           2
 D aspartate           6.2         83           2
 E glutamate          10.9        146           4
 F phenylalanine       3.5         47           2
 G glycine             4.3         57           1
 H histidine           1.7         23           1
 I isoleucine          4.2         56           2
 K lysine             10.4        139           2
 L leucine             7.9        106           2
 M methionine          1.4         19           2
 N asparagine          4.6         62           2
 P proline             5.7         76           2
 Q glutamine           6.4         85           2
 R arginine            5.9         79           2
 S serine              8.7        116           3
 T threonine           5.8         78           3
 V valine              3.8         51           2
 W tryptophan          0.6          8           1
 Y tyrosine            1.7         23           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   centromere protein J 
LOC100290184          0.067   PREDICTED: hypothetical protein XP_002346880 
MYO18A                0.018   myosin 18A isoform a 
MYO18A                0.018   myosin 18A isoform b 
TCHH                  0.018   trichohyalin 
KIF20B                0.017   M-phase phosphoprotein 1 
MYH11                 0.016   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.016   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.016   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.016   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
GOLGA4                0.016   golgi autoantigen, golgin subfamily a, 4 
ANKRD30A              0.013   ankyrin repeat domain 30A 
CENPF                 0.013   centromere protein F 
TCP10L2               0.012   t-complex 10-like 2 
GOLGB1                0.012   golgi autoantigen, golgin subfamily b, macrogolgin ...
CEP110                0.012   centrosomal protein 110kDa 
EEA1                  0.012   early endosome antigen 1, 162kD 
MAP1B                 0.012   microtubule-associated protein 1B 
TCP10L                0.012   T-complex 10A-2 
LOC400352             0.012   PREDICTED: similar to Putative golgin subfamily A m...
CLIP1                 0.012   restin isoform b 
TRIP11                0.012   thyroid hormone receptor interactor 11 
ANKRD30B              0.012   ankyrin repeat domain 30B 
KIF5C                 0.012   kinesin family member 5C 
TCP10                 0.012   t-complex 10 
TPR                   0.011   nuclear pore complex-associated protein TPR 
NEFH                  0.011   neurofilament, heavy polypeptide 200kDa 
CENPE                 0.011   centromere protein E 
MYH8                  0.011   myosin, heavy chain 8, skeletal muscle, perinatal [...
LOC283685             0.011   PREDICTED: golgi autoantigen, golgin subfamily a-li...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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