Guide to the Human Genome
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Name: CTNNBL1 Sequence: fasta or formatted (563aa) NCBI GI: 18644734
Description:

beta catenin-like 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         24           1
 C cysteine            1.4          8           1
 D aspartate           6.9         39           3
 E glutamate          12.8         72           8
 F phenylalanine       3.0         17           1
 G glycine             5.2         29           1
 H histidine           2.7         15           1
 I isoleucine          5.7         32           2
 K lysine              6.4         36           2
 L leucine            13.1         74           2
 M methionine          3.9         22           2
 N asparagine          4.8         27           1
 P proline             2.5         14           1
 Q glutamine           4.6         26           2
 R arginine            7.1         40           2
 S serine              4.6         26           2
 T threonine           3.4         19           2
 V valine              5.9         33           2
 W tryptophan          0.2          1           1
 Y tyrosine            1.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta catenin-like 1 
PNN                   0.020   pinin, desmosome associated protein 
TCHH                  0.018   trichohyalin 
FAM13B                0.018   hypothetical protein LOC51306 isoform 3 
FAM13B                0.018   hypothetical protein LOC51306 isoform 2 
RBM25                 0.017   RNA binding motif protein 25 
C14orf38              0.016   PREDICTED: hypothetical protein 
C14orf38              0.016   PREDICTED: hypothetical protein 
C14orf38              0.016   PREDICTED: hypothetical protein 
BAZ1A                 0.014   bromodomain adjacent to zinc finger domain, 1A isofo...
MYH11                 0.014   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.014   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.014   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.014   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
TPM2                  0.014   tropomyosin 2 (beta) isoform 3 
DBN1                  0.014   drebrin 1 isoform b 
DBN1                  0.014   drebrin 1 isoform a 
LOC100294088          0.013   PREDICTED: hypothetical protein, partial 
SFRS11                0.013   splicing factor, arginine/serine-rich 11 
CALD1                 0.013   caldesmon 1 isoform 1 
SFRS12                0.013   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.013   splicing factor, arginine/serine-rich 12 isoform b [...
WDR87                 0.012   NYD-SP11 protein 
OFD1                  0.012   oral-facial-digital syndrome 1 
GOLGB1                0.012   golgi autoantigen, golgin subfamily b, macrogolgin ...
BAT2D1                0.012   HBxAg transactivated protein 2 
CDC2L2                0.012   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.012   cell division cycle 2-like 2 isoform 1 
LOC100289089          0.012   PREDICTED: hypothetical protein XP_002343359 
CDC2L1                0.012   cell division cycle 2-like 1 (PITSLRE proteins) isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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