Guide to the Human Genome
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Name: LIN9 Sequence: fasta or formatted (558aa) NCBI GI: 32996737
Description:

lin-9 homolog

Referenced in:

RB1 and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         29           2
 C cysteine            1.6          9           1
 D aspartate           5.4         30           2
 E glutamate           6.5         36           3
 F phenylalanine       4.3         24           2
 G glycine             4.7         26           2
 H histidine           2.2         12           1
 I isoleucine          5.4         30           2
 K lysine              7.9         44           2
 L leucine            10.0         56           2
 M methionine          2.3         13           1
 N asparagine          5.0         28           2
 P proline             5.6         31           2
 Q glutamine           5.6         31           2
 R arginine            7.3         41           3
 S serine              8.1         45           3
 T threonine           5.9         33           1
 V valine              4.3         24           1
 W tryptophan          1.1          6           1
 Y tyrosine            1.8         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lin-9 homolog 
ARHGEF7               0.011   PAK-interacting exchange factor beta isoform a [Hom...
ARHGEF7               0.011   PAK-interacting exchange factor beta isoform a 
TPR                   0.011   nuclear pore complex-associated protein TPR 
MYH9                  0.009   myosin, heavy polypeptide 9, non-muscle 
TRIOBP                0.009   TRIO and F-actin binding protein isoform 6 
TRIOBP                0.009   TRIO and F-actin binding protein isoform 1 
GCC2                  0.009   GRIP and coiled-coil domain-containing 2 
TCIRG1                0.008   T-cell, immune regulator 1 isoform a 
CGN                   0.008   cingulin 
ARHGEF6               0.008   Rac/Cdc42 guanine nucleotide exchange factor 6 [Homo...
KRT17                 0.007   keratin 17 
RTTN                  0.007   rotatin 
C2orf77               0.006   hypothetical protein LOC129881 
FAM161B               0.006   hypothetical protein LOC145483 
MYO18B                0.006   myosin XVIIIB 
PPL                   0.006   periplakin 
EPS15                 0.005   epidermal growth factor receptor pathway substrate 15...
CEP290                0.005   centrosomal protein 290kDa 
NOLC1                 0.005   nucleolar and coiled-body phosphoprotein 1 
LOC401387             0.005   leucine-rich repeat and death domain-containing pro...
FILIP1                0.005   filamin A interacting protein 1 
EYA2                  0.005   eyes absent 2 isoform c 
MAPK8IP3              0.005   mitogen-activated protein kinase 8 interacting prote...
MAPK8IP3              0.005   mitogen-activated protein kinase 8 interacting prote...
HOOK3                 0.005   golgi-associated microtubule-binding protein HOOK3 [...
KIAA0753              0.005   hypothetical protein LOC9851 
WWC2                  0.005   WW and C2 domain containing 2 
EPS15                 0.005   epidermal growth factor receptor pathway substrate ...
KIF4B                 0.005   kinesin family member 4B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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