Guide to the Human Genome
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Name: C16orf3 Sequence: fasta or formatted (117aa) NCBI GI: 89886490
Description:

hypothetical protein LOC750

Referenced in:

Additional Cell Cycle Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         14           2
 C cysteine            7.7          9           1
 D aspartate           0.9          1           1
 E glutamate           4.3          5           1
 F phenylalanine       0.0          0           0
 G glycine             6.8          8           1
 H histidine           4.3          5           1
 I isoleucine          1.7          2           1
 K lysine              2.6          3           2
 L leucine             3.4          4           1
 M methionine          2.6          3           1
 N asparagine          0.0          0           0
 P proline            13.7         16           2
 Q glutamine           5.1          6           1
 R arginine            4.3          5           1
 S serine             17.1         20           4
 T threonine           6.0          7           2
 V valine              6.0          7           1
 W tryptophan          1.7          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC750 
LELP1                 0.066   late cornified envelope-like proline-rich 1 
LCE2C                 0.053   late cornified envelope 2C 
VWF                   0.049   von Willebrand factor preproprotein 
LCE2D                 0.044   late cornified envelope 2D 
KCP                   0.044   cysteine rich BMP regulator 2 isoform 1 
LOC100132635          0.044   PREDICTED: similar to mucin 5, partial 
LCE5A                 0.044   late cornified envelope 5A 
CDKN1C                0.040   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.040   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.040   cyclin-dependent kinase inhibitor 1C isoform a 
LCE2A                 0.040   late cornified envelope 2A 
LOC731282             0.035   PREDICTED: hypothetical protein 
SETD2                 0.035   SET domain containing 2 
SAMD1                 0.035   sterile alpha motif domain containing 1 
MMP9                  0.031   matrix metalloproteinase 9 preproprotein 
LOC731282             0.031   PREDICTED: hypothetical protein 
LOC100131696          0.031   PREDICTED: keratin associated protein 
LOC100288060          0.031   PREDICTED: hypothetical protein XP_002343557 
RTTN                  0.031   rotatin 
LCE2B                 0.031   late cornified envelope 2B 
LOC100133944          0.027   PREDICTED: similar to Fc fragment of IgG binding pr...
LOC100290309          0.027   PREDICTED: hypothetical protein XP_002348012 
LOC100289268          0.027   PREDICTED: hypothetical protein XP_002342358 
LCE1A                 0.027   late cornified envelope 1A 
FCGBP                 0.027   Fc fragment of IgG binding protein 
NR3C2                 0.027   nuclear receptor subfamily 3, group C, member 2 [Ho...
KAT2A                 0.027   general control of amino acid synthesis 5-like 2 [H...
KRTAP10-8             0.022   keratin associated protein 10-8 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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