Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CCNB1 Sequence: fasta or formatted (433aa) NCBI GI: 14327896
Description:

cyclin B1

Referenced in:

Cyclins and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         39           2
 C cysteine            1.2          5           1
 D aspartate           4.4         19           1
 E glutamate           7.6         33           3
 F phenylalanine       2.3         10           1
 G glycine             3.9         17           1
 H histidine           1.8          8           1
 I isoleucine          4.4         19           2
 K lysine              8.3         36           2
 L leucine            10.4         45           2
 M methionine          5.1         22           1
 N asparagine          3.9         17           2
 P proline             8.1         35           2
 Q glutamine           4.4         19           1
 R arginine            3.7         16           2
 S serine              4.6         20           1
 T threonine           5.3         23           1
 V valine              8.1         35           2
 W tryptophan          0.5          2           1
 Y tyrosine            3.0         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin B1 
CCNB2                 0.440   cyclin B2 
CCNB3                 0.190   cyclin B3 isoform 3 
CCNA2                 0.178   cyclin A 
CCNA1                 0.176   cyclin A1 isoform c 
CCNA1                 0.176   cyclin A1 isoform c 
CCNA1                 0.176   cyclin A1 isoform b 
CCNA1                 0.176   cyclin A1 isoform a 
CCNB3                 0.121   cyclin B3 isoform 1 
CNTD2                 0.091   cyclin N-terminal domain containing 2 isoform 2 [Ho...
CCNE1                 0.090   cyclin E1 isoform 1 
CCNE1                 0.090   cyclin E1 isoform 2 
CCNE2                 0.086   cyclin E2 
CCNO                  0.080   cyclin domain containing 
CCNF                  0.077   cyclin F 
CCND1                 0.068   cyclin D1 
CCND3                 0.065   cyclin D3 isoform 2 
CCND2                 0.054   cyclin D2 
CCNJ                  0.040   cyclin J isoform 1 
CCND3                 0.037   cyclin D3 isoform 1 
G3BP1                 0.035   Ras-GTPase-activating protein SH3-domain-binding prot...
G3BP1                 0.035   Ras-GTPase-activating protein SH3-domain-binding pro...
CCNI2                 0.030   cyclin I family, member 2 
CCNI                  0.029   cyclin I 
SLC16A2               0.026   solute carrier family 16, member 2 
RALGDS                0.025   ral guanine nucleotide dissociation stimulator isofo...
RALGDS                0.025   ral guanine nucleotide dissociation stimulator isof...
NOL3                  0.025   nucleolar protein 3 
TTN                   0.024   titin isoform N2-A 
ZNF828                0.024   zinc finger protein 828 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press