Guide to the Human Genome
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Name: CCNA1 Sequence: fasta or formatted (464aa) NCBI GI: 161377468
Description:

cyclin A1 isoform b

Referenced in:

Cyclins and Related Functions

Other entries for this name:
alt prot [421aa] cyclin A1 isoform c
alt prot [421aa] cyclin A1 isoform c
alt prot [465aa] cyclin A1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         34           4
 C cysteine            2.4         11           1
 D aspartate           5.2         24           2
 E glutamate           8.0         37           2
 F phenylalanine       3.9         18           1
 G glycine             6.0         28           2
 H histidine           1.7          8           1
 I isoleucine          3.9         18           1
 K lysine              4.5         21           2
 L leucine            12.7         59           3
 M methionine          2.6         12           1
 N asparagine          2.2         10           1
 P proline             6.2         29           2
 Q glutamine           4.5         21           2
 R arginine            4.7         22           2
 S serine              5.8         27           2
 T threonine           5.6         26           2
 V valine              6.7         31           2
 W tryptophan          0.9          4           1
 Y tyrosine            5.2         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin A1 isoform b 
CCNA1                 0.995   cyclin A1 isoform a 
CCNA1                 0.898   cyclin A1 isoform c 
CCNA1                 0.898   cyclin A1 isoform c 
CCNA2                 0.353   cyclin A 
CCNB2                 0.174   cyclin B2 
CCNB1                 0.161   cyclin B1 
CCNB3                 0.148   cyclin B3 isoform 3 
CCNB3                 0.103   cyclin B3 isoform 1 
CCNF                  0.095   cyclin F 
CCNE1                 0.087   cyclin E1 isoform 1 
CCNE1                 0.087   cyclin E1 isoform 2 
CCNE2                 0.085   cyclin E2 
CCND3                 0.083   cyclin D3 isoform 2 
CCNO                  0.082   cyclin domain containing 
CCND1                 0.074   cyclin D1 
CNTD2                 0.072   cyclin N-terminal domain containing 2 isoform 2 [Ho...
CCND2                 0.069   cyclin D2 
CCNJ                  0.058   cyclin J isoform 1 
CCND3                 0.052   cyclin D3 isoform 1 
CCNJ                  0.045   cyclin J isoform 2 
CCNJ                  0.044   cyclin J isoform 3 
CCNG1                 0.033   cyclin G1 
CCNG1                 0.033   cyclin G1 
CCNG2                 0.032   cyclin G2 
CCNI                  0.023   cyclin I 
CCNJL                 0.023   cyclin J-like 
CCNI2                 0.022   cyclin I family, member 2 
CCNK                  0.016   cyclin K isoform 1 
CCNK                  0.016   cyclin K isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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