Guide to the Human Genome
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Name: CCNO Sequence: fasta or formatted (350aa) NCBI GI: 153791755
Description:

cyclin domain containing

Referenced in:

Cyclins and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         37           2
 C cysteine            4.9         17           2
 D aspartate           4.0         14           1
 E glutamate           4.9         17           1
 F phenylalanine       4.0         14           2
 G glycine             4.9         17           2
 H histidine           3.1         11           1
 I isoleucine          2.3          8           1
 K lysine              3.1         11           2
 L leucine            14.0         49           2
 M methionine          1.1          4           1
 N asparagine          1.7          6           1
 P proline             8.6         30           2
 Q glutamine           5.4         19           2
 R arginine            7.1         25           2
 S serine              9.1         32           2
 T threonine           4.6         16           3
 V valine              5.1         18           1
 W tryptophan          0.3          1           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin domain containing 
CCNA1                 0.109   cyclin A1 isoform c 
CCNA1                 0.109   cyclin A1 isoform c 
CCNA1                 0.109   cyclin A1 isoform b 
CCNA1                 0.109   cyclin A1 isoform a 
CCNA2                 0.105   cyclin A 
CCNB2                 0.102   cyclin B2 
CCNB1                 0.098   cyclin B1 
CNTD2                 0.091   cyclin N-terminal domain containing 2 isoform 2 [Ho...
CCNB3                 0.089   cyclin B3 isoform 3 
CCND1                 0.064   cyclin D1 
CCND3                 0.058   cyclin D3 isoform 2 
CCNE1                 0.055   cyclin E1 isoform 1 
CCNE1                 0.055   cyclin E1 isoform 2 
CCNE2                 0.054   cyclin E2 
CCND2                 0.054   cyclin D2 
CCNJ                  0.054   cyclin J isoform 1 
CCNB3                 0.051   cyclin B3 isoform 1 
CCNG2                 0.050   cyclin G2 
CCND3                 0.047   cyclin D3 isoform 1 
CCNF                  0.036   cyclin F 
CCNI                  0.036   cyclin I 
CCNG1                 0.034   cyclin G1 
CCNG1                 0.034   cyclin G1 
CCNJ                  0.032   cyclin J isoform 3 
CCNJ                  0.028   cyclin J isoform 2 
CCNI2                 0.023   cyclin I family, member 2 
SGPP1                 0.015   sphingosine-1-phosphate phosphatase 1 
SYNPO2L               0.015   synaptopodin 2-like isoform a 
SH3BP5L               0.015   SH3-binding domain protein 5-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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