Guide to the Human Genome
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Name: CCNA2 Sequence: fasta or formatted (432aa) NCBI GI: 4502613
Description:

cyclin A

Referenced in:

Cyclins and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         38           2
 C cysteine            0.7          3           1
 D aspartate           4.6         20           2
 E glutamate           7.6         33           2
 F phenylalanine       2.5         11           1
 G glycine             3.7         16           1
 H histidine           2.8         12           1
 I isoleucine          3.5         15           1
 K lysine              7.2         31           2
 L leucine            12.0         52           2
 M methionine          2.8         12           1
 N asparagine          3.7         16           1
 P proline             7.9         34           2
 Q glutamine           5.8         25           3
 R arginine            3.7         16           2
 S serine              5.8         25           2
 T threonine           5.3         23           1
 V valine              6.9         30           1
 W tryptophan          0.7          3           1
 Y tyrosine            3.9         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin A 
CCNA1                 0.385   cyclin A1 isoform c 
CCNA1                 0.385   cyclin A1 isoform c 
CCNA1                 0.385   cyclin A1 isoform b 
CCNA1                 0.385   cyclin A1 isoform a 
CCNB1                 0.178   cyclin B1 
CCNB2                 0.155   cyclin B2 
CCNB3                 0.140   cyclin B3 isoform 3 
CCNF                  0.098   cyclin F 
CCNE1                 0.094   cyclin E1 isoform 1 
CCNE1                 0.094   cyclin E1 isoform 2 
CCNB3                 0.092   cyclin B3 isoform 1 
CCNE2                 0.089   cyclin E2 
CCNO                  0.086   cyclin domain containing 
CCND1                 0.086   cyclin D1 
CCND3                 0.084   cyclin D3 isoform 2 
CCND2                 0.081   cyclin D2 
CNTD2                 0.068   cyclin N-terminal domain containing 2 isoform 2 [Ho...
CCNJ                  0.055   cyclin J isoform 1 
CCND3                 0.053   cyclin D3 isoform 1 
CCNJ                  0.051   cyclin J isoform 2 
CCNJ                  0.050   cyclin J isoform 3 
CCNG1                 0.045   cyclin G1 
CCNG1                 0.045   cyclin G1 
CCNJL                 0.032   cyclin J-like 
CCNG2                 0.031   cyclin G2 
CCNI                  0.030   cyclin I 
CCNI2                 0.029   cyclin I family, member 2 
MYO18A                0.020   myosin 18A isoform b 
MYO18A                0.020   myosin 18A isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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