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Search of human proteins with 10938016
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|10938016 claudin 11 [Homo sapiens]
(207 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|10938016 claudin 11 [Homo sapiens] 427 e-120
gi|10863887 claudin 1 [Homo sapiens] 110 6e-25
gi|183979973 claudin 19 isoform a [Homo sapiens] 105 4e-23
gi|183979975 claudin 19 isoform b [Homo sapiens] 105 4e-23
gi|153792186 claudin 7 [Homo sapiens] 103 1e-22
gi|50345279 claudin 18 isoform 2 [Homo sapiens] 95 4e-20
gi|7705961 claudin 18 isoform 1 [Homo sapiens] 95 4e-20
gi|5921465 claudin 10 isoform b [Homo sapiens] 94 1e-19
gi|195947374 claudin 5 [Homo sapiens] 94 1e-19
gi|195947372 claudin 5 [Homo sapiens] 94 1e-19
gi|7656981 claudin 15 [Homo sapiens] 90 1e-18
gi|11141861 claudin 9 [Homo sapiens] 90 2e-18
gi|33598916 claudin 10 isoform a [Homo sapiens] 88 4e-18
gi|4502875 claudin 3 [Homo sapiens] 86 2e-17
gi|225703142 claudin 14 [Homo sapiens] 84 1e-16
gi|21536294 claudin 14 [Homo sapiens] 84 1e-16
gi|225703138 claudin 14 [Homo sapiens] 84 1e-16
gi|6912314 claudin 14 [Homo sapiens] 84 1e-16
gi|225703140 claudin 14 [Homo sapiens] 84 1e-16
gi|153792768 claudin 6 [Homo sapiens] 80 1e-15
gi|4502877 claudin 4 [Homo sapiens] 78 5e-15
gi|169167239 PREDICTED: claudin-24-like [Homo sapiens] 77 1e-14
gi|169166931 PREDICTED: claudin-24-like [Homo sapiens] 77 1e-14
gi|40788011 claudin 8 [Homo sapiens] 75 3e-14
gi|169166402 PREDICTED: claudin-24-like [Homo sapiens] 75 5e-14
gi|9966781 claudin 2 [Homo sapiens] 72 3e-13
gi|231569235 claudin 10 isoform a_i1 [Homo sapiens] 70 1e-12
gi|47716519 claudin 20 [Homo sapiens] 70 2e-12
gi|5729970 claudin 16 [Homo sapiens] 69 3e-12
gi|6912316 claudin 17 [Homo sapiens] 69 4e-12
>gi|10938016 claudin 11 [Homo sapiens]
Length = 207
Score = 427 bits (1098), Expect = e-120
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVMAT 60
MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVMAT
Sbjct: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVMAT 60
Query: 61 GLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRA 120
GLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRA
Sbjct: 61 GLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRA 120
Query: 121 QLAGVLLILLALCALVATIWFPVCAHRETTIVSFGYSLYAGWIGAVLCLVGGCVILCCAG 180
QLAGVLLILLALCALVATIWFPVCAHRETTIVSFGYSLYAGWIGAVLCLVGGCVILCCAG
Sbjct: 121 QLAGVLLILLALCALVATIWFPVCAHRETTIVSFGYSLYAGWIGAVLCLVGGCVILCCAG 180
Query: 181 DAQAFGENRFYYTAGSSSPTHAKSAHV 207
DAQAFGENRFYYTAGSSSPTHAKSAHV
Sbjct: 181 DAQAFGENRFYYTAGSSSPTHAKSAHV 207
>gi|10863887 claudin 1 [Homo sapiens]
Length = 211
Score = 110 bits (276), Expect = 6e-25
Identities = 69/190 (36%), Positives = 100/190 (52%), Gaps = 26/190 (13%)
Query: 6 LQVVGFVTSFVGWIGVIVTTSTNDWVVT--CGYTIPTCRKLDELGSKGLWADCV-MATGL 62
LQ++GF+ +F+GWIG IV+T+ W + G I T + + E GLW CV +TG
Sbjct: 6 LQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYE----GLWMSCVSQSTGQ 61
Query: 63 YHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRAQL 122
CK +L L +QA RALM+ +LG+ AI + + C++ ++ V K R A +
Sbjct: 62 IQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAVI 121
Query: 123 AGVLLILLALCALVATIWF-------------PVCAHRETTIVSFGYSLYAGWIGAVLCL 169
G + +L L LVAT W+ PV A E FG +L+ GW A LCL
Sbjct: 122 GGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYE-----FGQALFTGWAAASLCL 176
Query: 170 VGGCVILCCA 179
+GG +LCC+
Sbjct: 177 LGG-ALLCCS 185
>gi|183979973 claudin 19 isoform a [Homo sapiens]
Length = 224
Score = 105 bits (261), Expect = 4e-23
Identities = 68/209 (32%), Positives = 104/209 (49%), Gaps = 15/209 (7%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVT--CGYTIPTCRKLDELGSKGLWADCV- 57
M + LQ++G+ + GW+G+I +T+ W + G I T L E GLW C
Sbjct: 1 MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYE----GLWMSCAS 56
Query: 58 MATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKY 117
+TG CK +L L G++Q+ RALM+ A +LG A++L + + C R+G +AK
Sbjct: 57 QSTGQVQCKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKG 116
Query: 118 RRAQLAGVLLILLALCALVATIWFPVCAHRE----TTIVS----FGYSLYAGWIGAVLCL 169
R A G L IL LC L A W+ +E +T V+ FG +L+ GW A L +
Sbjct: 117 RVAIAGGALFILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAV 176
Query: 170 VGGCVILCCAGDAQAFGENRFYYTAGSSS 198
+GG + C + + + Y G S+
Sbjct: 177 LGGSFLCCTCPEPERPNSSPQPYRPGPSA 205
>gi|183979975 claudin 19 isoform b [Homo sapiens]
Length = 211
Score = 105 bits (261), Expect = 4e-23
Identities = 68/209 (32%), Positives = 104/209 (49%), Gaps = 15/209 (7%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVT--CGYTIPTCRKLDELGSKGLWADCV- 57
M + LQ++G+ + GW+G+I +T+ W + G I T L E GLW C
Sbjct: 1 MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYE----GLWMSCAS 56
Query: 58 MATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKY 117
+TG CK +L L G++Q+ RALM+ A +LG A++L + + C R+G +AK
Sbjct: 57 QSTGQVQCKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKG 116
Query: 118 RRAQLAGVLLILLALCALVATIWFPVCAHRE----TTIVS----FGYSLYAGWIGAVLCL 169
R A G L IL LC L A W+ +E +T V+ FG +L+ GW A L +
Sbjct: 117 RVAIAGGALFILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAV 176
Query: 170 VGGCVILCCAGDAQAFGENRFYYTAGSSS 198
+GG + C + + + Y G S+
Sbjct: 177 LGGSFLCCTCPEPERPNSSPQPYRPGPSA 205
>gi|153792186 claudin 7 [Homo sapiens]
Length = 211
Score = 103 bits (257), Expect = 1e-22
Identities = 65/201 (32%), Positives = 102/201 (50%), Gaps = 22/201 (10%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVT--CGYTIPTCRKLDELGSKGLWADCV- 57
M + LQ++GF + +GW+G++ T+ W ++ G I T + + KGLW DCV
Sbjct: 1 MANSGLQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAM----YKGLWMDCVT 56
Query: 58 MATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKY 117
+TG+ CK +L L +QA RALM+ + VLG A+ + + C R G + V K
Sbjct: 57 QSTGMMSCKMYDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKA 116
Query: 118 RRAQLAGVLLILLALCALVATIWFPVCAHRETT-----------IVSFGYSLYAGWIGAV 166
R A G++ I+ L ALVA W+ H+ T FG +++ GW G+
Sbjct: 117 RIAMGGGIIFIVAGLAALVACSWY---GHQIVTDFYNPLIPTNIKYEFGPAIFIGWAGSA 173
Query: 167 LCLVGGCVILC-CAGDAQAFG 186
L ++GG ++ C C G+ G
Sbjct: 174 LVILGGALLSCSCPGNESKAG 194
>gi|50345279 claudin 18 isoform 2 [Homo sapiens]
Length = 261
Score = 95.1 bits (235), Expect = 4e-20
Identities = 68/221 (30%), Positives = 97/221 (43%), Gaps = 28/221 (12%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVM-A 59
M T Q +GFV S +G G+I T + W Y P + +GLW CV +
Sbjct: 1 MAVTACQGLGFVVSLIGIAGIIAATCMDQWSTQDLYNNPVTAVFNY---QGLWRSCVRES 57
Query: 60 TGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRR 119
+G C+ +L LP +QA RALMI VLG +L+ + L CIR+G AK
Sbjct: 58 SGFTECRGYFTLLGLPAMLQAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANM 117
Query: 120 AQLAGVLLILLALCA----------LVATIWFPVC---------AHRETTIVSFGYSLYA 160
+G++ I+ LCA LV W T +FG +L+
Sbjct: 118 TLTSGIMFIVSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFV 177
Query: 161 GWIGAVLCLVGGCVILCCAGDAQAFGENRF----YYTAGSS 197
GW+ L L+GG V++C A A E + Y+ +G S
Sbjct: 178 GWVAGGLTLIGG-VMMCIACRGLAPEETNYKAVSYHASGHS 217
>gi|7705961 claudin 18 isoform 1 [Homo sapiens]
Length = 261
Score = 95.1 bits (235), Expect = 4e-20
Identities = 70/221 (31%), Positives = 96/221 (43%), Gaps = 28/221 (12%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCV-MA 59
M T QVV F+ S +G G I T + W Y P +GLW CV +
Sbjct: 1 MSTTTCQVVAFLLSILGLAGCIAATGMDMWSTQDLYDNPVTSVFQY---EGLWRSCVRQS 57
Query: 60 TGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRR 119
+G C+P IL LP +QA RALMI VLG +L+ + L CIR+G AK
Sbjct: 58 SGFTECRPYFTILGLPAMLQAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANM 117
Query: 120 AQLAGVLLILLALCA----------LVATIWFPVC---------AHRETTIVSFGYSLYA 160
+G++ I+ LCA LV W T +FG +L+
Sbjct: 118 TLTSGIMFIVSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFV 177
Query: 161 GWIGAVLCLVGGCVILCCAGDAQAFGENRF----YYTAGSS 197
GW+ L L+GG V++C A A E + Y+ +G S
Sbjct: 178 GWVAGGLTLIGG-VMMCIACRGLAPEETNYKAVSYHASGHS 217
>gi|5921465 claudin 10 isoform b [Homo sapiens]
Length = 228
Score = 93.6 bits (231), Expect = 1e-19
Identities = 66/190 (34%), Positives = 95/190 (50%), Gaps = 23/190 (12%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTC--GYTIPTCRKLDELGSKGLWADCVM 58
M +T +++ F+ S GW+ V T T+ W V+ G I T LW CV
Sbjct: 1 MASTASEIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYW-----ANLWKACVT 55
Query: 59 -ATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKY 117
+TG+ +CK +L L GY+QACR LMIAA LG + L + C ++G AK
Sbjct: 56 DSTGVSNCKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDK-AKA 114
Query: 118 RRAQLAGVLLILLALCALVATIWFPVCAHRETTIV----------SFGYSLYAGWIGAVL 167
+ A LAG++ IL LC++ + A++ TT G +L+ GW GA L
Sbjct: 115 KIACLAGIVFILSGLCSMTGCSLY---ANKITTEFFDPLFVEQKYELGAALFIGWAGASL 171
Query: 168 CLVGGCVILC 177
C++GG VI C
Sbjct: 172 CIIGG-VIFC 180
>gi|195947374 claudin 5 [Homo sapiens]
Length = 303
Score = 93.6 bits (231), Expect = 1e-19
Identities = 67/189 (35%), Positives = 88/189 (46%), Gaps = 17/189 (8%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTC--GYTIPTCRKLDELGSKGLWADCVM 58
M + L+++G V VGW G+I+ W VT + I T + KGLW CV+
Sbjct: 86 MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTT----WKGLWMSCVV 141
Query: 59 -ATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKY 117
+TG CK +L L VQA RAL ++A +L A+ + L C PG AK
Sbjct: 142 QSTGHMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTC-VAPGPAKA 200
Query: 118 RRAQLAGVLLILLALCALVATIWFPVCAHRE--------TTIVSFGYSLYAGWIGAVLCL 169
R A GVL + L ALV WF RE + G +LY GW L +
Sbjct: 201 RVALTGGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLM 260
Query: 170 VGGCVILCC 178
VGGC +LCC
Sbjct: 261 VGGC-LLCC 268
>gi|195947372 claudin 5 [Homo sapiens]
Length = 303
Score = 93.6 bits (231), Expect = 1e-19
Identities = 67/189 (35%), Positives = 88/189 (46%), Gaps = 17/189 (8%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTC--GYTIPTCRKLDELGSKGLWADCVM 58
M + L+++G V VGW G+I+ W VT + I T + KGLW CV+
Sbjct: 86 MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTT----WKGLWMSCVV 141
Query: 59 -ATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKY 117
+TG CK +L L VQA RAL ++A +L A+ + L C PG AK
Sbjct: 142 QSTGHMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTC-VAPGPAKA 200
Query: 118 RRAQLAGVLLILLALCALVATIWFPVCAHRE--------TTIVSFGYSLYAGWIGAVLCL 169
R A GVL + L ALV WF RE + G +LY GW L +
Sbjct: 201 RVALTGGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLM 260
Query: 170 VGGCVILCC 178
VGGC +LCC
Sbjct: 261 VGGC-LLCC 268
>gi|7656981 claudin 15 [Homo sapiens]
Length = 228
Score = 90.1 bits (222), Expect = 1e-18
Identities = 64/205 (31%), Positives = 94/205 (45%), Gaps = 16/205 (7%)
Query: 2 VATCLQVVGFVTSFVGWIGVIVTTSTNDW-VVTCGYTIPTCRKLDELGSKGLWADCVM-A 59
++ ++ GF + VG + + VT + W V T + T + E LW C +
Sbjct: 1 MSMAVETFGFFMATVGLLMLGVTLPNSYWRVSTVHGNVITTNTIFE----NLWFSCATDS 56
Query: 60 TGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRR 119
G+Y+C +L L GY+QACRALMI A +LG +LL + L C +G K +
Sbjct: 57 LGVYNCWEFPSMLALSGYIQACRALMITAILLGFLGLLLGIAGLRCTNIGGLELSRKAKL 116
Query: 120 AQLAGVLLILLALCALVATIWFPVCAHRE-------TTIVSFGYSLYAGWIGAVLCLVGG 172
A AG L IL +C +VA W+ R+ T G +LY GW +++ ++GG
Sbjct: 117 AATAGALHILAGICGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGWSASLISILGG 176
Query: 173 ---CVILCCAGDAQAFGENRFYYTA 194
C CC D R Y A
Sbjct: 177 LCLCSACCCGSDEDPAASARRPYQA 201
>gi|11141861 claudin 9 [Homo sapiens]
Length = 217
Score = 89.7 bits (221), Expect = 2e-18
Identities = 64/191 (33%), Positives = 96/191 (50%), Gaps = 21/191 (10%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTC--GYTIPTCRKLDELGSKGLWADCVM 58
M +T L+++G + +GW+G +V+ + W VT G +I + + E GLW CV+
Sbjct: 1 MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWE----GLWMSCVV 56
Query: 59 -ATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKY 117
+TG CK +L LP +QA RAL + A +L L +L+ +T C ++ G AK
Sbjct: 57 QSTGQMQCKVYDSLLALPQDLQAARALCVIALLLALLGLLVAITGAQCTTCVEDEG-AKA 115
Query: 118 RRAQLAGVLLILLALCALVATIWF----------PVCAHRETTIVSFGYSLYAGWIGAVL 167
R AGV+L+L + L+ W P+ A E G SLY GW A L
Sbjct: 116 RIVLTAGVILLLAGILVLIPVCWTAHAIIQDFYNPLVA--EALKRELGASLYLGWAAAAL 173
Query: 168 CLVGGCVILCC 178
++GG +LCC
Sbjct: 174 LMLGG-GLLCC 183
>gi|33598916 claudin 10 isoform a [Homo sapiens]
Length = 226
Score = 88.2 bits (217), Expect = 4e-18
Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 21/183 (11%)
Query: 7 QVVGFVTSFVGWIGVIVTTSTNDWVVTC-GYTIPTCRKLDELGSKGLWADCV-MATGLYH 64
Q+ V+ G+ ++ T++N+W VT ++ T + + GLW +C A G +H
Sbjct: 5 QIWALVSGVGGFGALVAATTSNEWKVTTRASSVITATWVYQ----GLWMNCAGNALGSFH 60
Query: 65 CKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRAQLAG 124
C+P I + GY+QACR LMIAA LG + L + C ++G AK + A LAG
Sbjct: 61 CRPHFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGS-DKAKAKIACLAG 119
Query: 125 VLLILLALCALVATIWFPVCAHRETT----------IVSFGYSLYAGWIGAVLCLVGGCV 174
++ IL LC++ + A++ TT G +L+ GW GA LC++GG V
Sbjct: 120 IVFILSGLCSMTGCSLY---ANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGG-V 175
Query: 175 ILC 177
I C
Sbjct: 176 IFC 178
>gi|4502875 claudin 3 [Homo sapiens]
Length = 220
Score = 86.3 bits (212), Expect = 2e-17
Identities = 65/205 (31%), Positives = 96/205 (46%), Gaps = 17/205 (8%)
Query: 6 LQVVGFVTSFVGWIGVIVTTSTNDWVVTC--GYTIPTCRKLDELGSKGLWADCVM-ATGL 62
L++ G + +GW+G IV + W V+ G I T + + E GLW +CV+ +TG
Sbjct: 5 LEITGTALAVLGWLGTIVCCALPMWRVSAFIGSNIITSQNIWE----GLWMNCVVQSTGQ 60
Query: 63 YHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRAQL 122
CK +L LP +QA RAL++ A +L +L+ L C Q+ AK + +
Sbjct: 61 MQCKVYDSLLALPQDLQAARALIVVAILLAAFGLLVALVGAQCTNCVQD-DTAKAKITIV 119
Query: 123 AGVLLILLALCALVATIWFPVCAHR--------ETTIVSFGYSLYAGWIGAVLCLVGGCV 174
AGVL +L AL LV W R E G LY GW A L L+GG +
Sbjct: 120 AGVLFLLAALLTLVPVSWSANTIIRDFYNPVVPEAQKREMGAGLYVGWAAAALQLLGGAL 179
Query: 175 ILC-CAGDAQAFGENRFYYTAGSSS 198
+ C C + + + Y+A S+
Sbjct: 180 LCCSCPPREKKYTATKVVYSAPRST 204
>gi|225703142 claudin 14 [Homo sapiens]
Length = 239
Score = 83.6 bits (205), Expect = 1e-16
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVM-A 59
M +T +Q++GF+ SF+G +G ++TT W T + L KGLW +CV +
Sbjct: 1 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYL--KGLWMECVWHS 58
Query: 60 TGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRR 119
TG+Y C+ +L LP +QA RALM+ + +L A + + C R + AK
Sbjct: 59 TGIYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGT-PAKTTF 117
Query: 120 AQLAGVLLILLALCALVATIWF--PVCAHRETTIV------SFGYSLYAGWIGAVLCLVG 171
A L G L IL L +VA W V + ++ G +LY G+I + L L+G
Sbjct: 118 AILGGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIG 177
Query: 172 GCVI-LCCAGDA 182
G ++ L C +A
Sbjct: 178 GTLLCLSCQDEA 189
>gi|21536294 claudin 14 [Homo sapiens]
Length = 239
Score = 83.6 bits (205), Expect = 1e-16
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVM-A 59
M +T +Q++GF+ SF+G +G ++TT W T + L KGLW +CV +
Sbjct: 1 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYL--KGLWMECVWHS 58
Query: 60 TGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRR 119
TG+Y C+ +L LP +QA RALM+ + +L A + + C R + AK
Sbjct: 59 TGIYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGT-PAKTTF 117
Query: 120 AQLAGVLLILLALCALVATIWF--PVCAHRETTIV------SFGYSLYAGWIGAVLCLVG 171
A L G L IL L +VA W V + ++ G +LY G+I + L L+G
Sbjct: 118 AILGGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIG 177
Query: 172 GCVI-LCCAGDA 182
G ++ L C +A
Sbjct: 178 GTLLCLSCQDEA 189
>gi|225703138 claudin 14 [Homo sapiens]
Length = 239
Score = 83.6 bits (205), Expect = 1e-16
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVM-A 59
M +T +Q++GF+ SF+G +G ++TT W T + L KGLW +CV +
Sbjct: 1 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYL--KGLWMECVWHS 58
Query: 60 TGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRR 119
TG+Y C+ +L LP +QA RALM+ + +L A + + C R + AK
Sbjct: 59 TGIYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGT-PAKTTF 117
Query: 120 AQLAGVLLILLALCALVATIWF--PVCAHRETTIV------SFGYSLYAGWIGAVLCLVG 171
A L G L IL L +VA W V + ++ G +LY G+I + L L+G
Sbjct: 118 AILGGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIG 177
Query: 172 GCVI-LCCAGDA 182
G ++ L C +A
Sbjct: 178 GTLLCLSCQDEA 189
>gi|6912314 claudin 14 [Homo sapiens]
Length = 239
Score = 83.6 bits (205), Expect = 1e-16
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVM-A 59
M +T +Q++GF+ SF+G +G ++TT W T + L KGLW +CV +
Sbjct: 1 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYL--KGLWMECVWHS 58
Query: 60 TGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRR 119
TG+Y C+ +L LP +QA RALM+ + +L A + + C R + AK
Sbjct: 59 TGIYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGT-PAKTTF 117
Query: 120 AQLAGVLLILLALCALVATIWF--PVCAHRETTIV------SFGYSLYAGWIGAVLCLVG 171
A L G L IL L +VA W V + ++ G +LY G+I + L L+G
Sbjct: 118 AILGGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIG 177
Query: 172 GCVI-LCCAGDA 182
G ++ L C +A
Sbjct: 178 GTLLCLSCQDEA 189
>gi|225703140 claudin 14 [Homo sapiens]
Length = 239
Score = 83.6 bits (205), Expect = 1e-16
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVM-A 59
M +T +Q++GF+ SF+G +G ++TT W T + L KGLW +CV +
Sbjct: 1 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYL--KGLWMECVWHS 58
Query: 60 TGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRR 119
TG+Y C+ +L LP +QA RALM+ + +L A + + C R + AK
Sbjct: 59 TGIYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGT-PAKTTF 117
Query: 120 AQLAGVLLILLALCALVATIWF--PVCAHRETTIV------SFGYSLYAGWIGAVLCLVG 171
A L G L IL L +VA W V + ++ G +LY G+I + L L+G
Sbjct: 118 AILGGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIG 177
Query: 172 GCVI-LCCAGDA 182
G ++ L C +A
Sbjct: 178 GTLLCLSCQDEA 189
>gi|153792768 claudin 6 [Homo sapiens]
Length = 220
Score = 80.1 bits (196), Expect = 1e-15
Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 16/210 (7%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTC--GYTIPTCRKLDELGSKGLWADCVM 58
M + +Q++G V + +GW+ +V+ + W VT G +I + + E GLW CV+
Sbjct: 1 MASAGMQILGVVLTLLGWVNGLVSCALPMWKVTAFIGNSIVVAQVVWE----GLWMSCVV 56
Query: 59 -ATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKY 117
+TG CK +L LP +QA RAL + A ++ L +L+ L C +E +K
Sbjct: 57 QSTGQMQCKVYDSLLALPQDLQAARALCVIALLVALFGLLVYLAGAKCTTCVEEKD-SKA 115
Query: 118 RRAQLAGVLLILLALCALVATIWFPVCAHR--------ETTIVSFGYSLYAGWIGAVLCL 169
R +G++ ++ + L+ W R E G SLY GW + L L
Sbjct: 116 RLVLTSGIVFVISGVLTLIPVCWTAHAIIRDFYNPLVAEAQKRELGASLYLGWAASGLLL 175
Query: 170 VGGCVILCCAGDAQAFGENRFYYTAGSSSP 199
+GG ++ C + G + + +S+P
Sbjct: 176 LGGGLLCCTCPSGGSQGPSHYMARYSTSAP 205
>gi|4502877 claudin 4 [Homo sapiens]
Length = 209
Score = 78.2 bits (191), Expect = 5e-15
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 21/191 (10%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTC--GYTIPTCRKLDELGSKGLWADCVM 58
M + LQV+G + +GW+ V++ + W VT G I T + + E GLW +CV+
Sbjct: 1 MASMGLQVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWE----GLWMNCVV 56
Query: 59 -ATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKY 117
+TG CK +L LP +QA RAL+I + ++ +LL + C ++ AK
Sbjct: 57 QSTGQMQCKVYDSLLALPQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLEDES-AKA 115
Query: 118 RRAQLAGVLLILLALCALVATIWF----------PVCAHRETTIVSFGYSLYAGWIGAVL 167
+ +AGV+ +L L +V W P+ A + G SLY GW + L
Sbjct: 116 KTMIVAGVVFLLAGLMVIVPVSWTAHNIIQDFYNPLVASGQKR--EMGASLYVGWAASGL 173
Query: 168 CLVGGCVILCC 178
L+GG +LCC
Sbjct: 174 LLLGG-GLLCC 183
>gi|169167239 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 77.0 bits (188), Expect = 1e-14
Identities = 57/194 (29%), Positives = 84/194 (43%), Gaps = 21/194 (10%)
Query: 4 TCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVMATGL- 62
T +Q VG + SF+GWI I+TT W + E + GLW CV+ +
Sbjct: 7 TAMQSVGLLLSFLGWILSIITTYLPHWK-----NLNLDLNEMENWTMGLWQTCVIQEEVG 61
Query: 63 YHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRAQL 122
CK L LP ++ R LM ++ LG +L+ L C+R+G+ K R L
Sbjct: 62 MQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLIL 121
Query: 123 AGVLLILLALCALVATIWFPVCAHRETTIV------------SFGYSLYAGWIGAVLCLV 170
G+L + ALV W AH+ FG +L+ GW + L+
Sbjct: 122 GGILSWASGITALVPVSW---VAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLL 178
Query: 171 GGCVILCCAGDAQA 184
GGC++ C A + A
Sbjct: 179 GGCLLNCAACSSHA 192
>gi|169166931 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 77.0 bits (188), Expect = 1e-14
Identities = 57/194 (29%), Positives = 84/194 (43%), Gaps = 21/194 (10%)
Query: 4 TCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVMATGL- 62
T +Q VG + SF+GWI I+TT W + E + GLW CV+ +
Sbjct: 7 TAMQSVGLLLSFLGWILSIITTYLPHWK-----NLNLDLNEMENWTMGLWQTCVIQEEVG 61
Query: 63 YHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRAQL 122
CK L LP ++ R LM ++ LG +L+ L C+R+G+ K R L
Sbjct: 62 MQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLIL 121
Query: 123 AGVLLILLALCALVATIWFPVCAHRETTIV------------SFGYSLYAGWIGAVLCLV 170
G+L + ALV W AH+ FG +L+ GW + L+
Sbjct: 122 GGILSWASGITALVPVSW---VAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLL 178
Query: 171 GGCVILCCAGDAQA 184
GGC++ C A + A
Sbjct: 179 GGCLLNCAACSSHA 192
>gi|40788011 claudin 8 [Homo sapiens]
Length = 225
Score = 75.5 bits (184), Expect = 3e-14
Identities = 58/227 (25%), Positives = 97/227 (42%), Gaps = 22/227 (9%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVMAT 60
M L++ G VG +G + T W V+ I + E +GLW +CV
Sbjct: 1 MATHALEIAGLFLGGVGMVGTVAVTVMPQWRVSA--FIENNIVVFENFWEGLWMNCVRQA 58
Query: 61 GL-YHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRR 119
+ CK +L L +QA R LM AASV+ A ++ + + C R + K
Sbjct: 59 NIRMQCKIYDSLLALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHI 118
Query: 120 AQLAGVLLILLALCALVATIWFPVCAHRE--TTIVS------FGYSLYAGWIGAVLCLVG 171
AG++ I+ + L+ W R+ +IV+ G +LY GW A++ +VG
Sbjct: 119 LLTAGIIFIITGMVVLIPVSWVANAIIRDFYNSIVNVAQKRELGEALYLGWTTALVLIVG 178
Query: 172 G---CVILCCAGDAQAF--------GENRFYYTAGSSSPTHAKSAHV 207
G C + CC + ++ + Y+T S +++S +V
Sbjct: 179 GALFCCVFCCNEKSSSYRYSIPSHRTTQKSYHTGKKSPSVYSRSQYV 225
>gi|169166402 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 74.7 bits (182), Expect = 5e-14
Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 21/194 (10%)
Query: 4 TCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVMATGL- 62
T +Q VG + S +GWI I+TT W + E + GLW CV+ +
Sbjct: 7 TAMQSVGLLLSLLGWILSIITTYLPHWK-----NLNLDLNEMENWTMGLWQTCVIQEEVG 61
Query: 63 YHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRAQL 122
CK L LP ++ R LM ++ LG +L+ L C+R+G+ K R L
Sbjct: 62 MQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLIL 121
Query: 123 AGVLLILLALCALVATIWFPVCAHRETTIV------------SFGYSLYAGWIGAVLCLV 170
G+L + ALV W AH+ FG +L+ GW + L+
Sbjct: 122 GGILSWASGITALVPVSW---VAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLL 178
Query: 171 GGCVILCCAGDAQA 184
GGC++ C A + A
Sbjct: 179 GGCLLNCAACSSHA 192
>gi|9966781 claudin 2 [Homo sapiens]
Length = 230
Score = 72.0 bits (175), Expect = 3e-13
Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 19/216 (8%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTC--GYTIPTCRKLDELGSKGLWADCVM 58
M + LQ+VG++ +G +G +V W + G +I T SKGLW +C
Sbjct: 1 MASLGLQLVGYILGLLGLLGTLVAMLLPSWKTSSYVGASIVTAVGF----SKGLWMECAT 56
Query: 59 -ATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKY 117
+TG+ C +L LP +QA +A+M+ +S + A ++ + + C QE AK
Sbjct: 57 HSTGITQCDIYSTLLGLPADIQAAQAMMVTSSAISSLACIISVVGMRCTVFCQE-SRAKD 115
Query: 118 RRAQLAGVLLILLALCALVATIW--------FPVCAHRETTIVSFGYSLYAGWIGAVLCL 169
R A GV IL L + W F ++ G +LY G I ++ L
Sbjct: 116 RVAVAGGVFFILGGLLGFIPVAWNLHGILRDFYSPLVPDSMKFEIGEALYLGIISSLFSL 175
Query: 170 VGGCVILCCAGDAQAFGENRFYYTAGSSSPTHAKSA 205
+ G +ILC + +Q N YY A + P +S+
Sbjct: 176 IAG-IILCFSCSSQRNRSN--YYDAYQAQPLATRSS 208
>gi|231569235 claudin 10 isoform a_i1 [Homo sapiens]
Length = 207
Score = 70.1 bits (170), Expect = 1e-12
Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 38/182 (20%)
Query: 7 QVVGFVTSFVGWIGVIVTTSTNDWVVTC-GYTIPTCRKLDELGSKGLWADCVMATGLYHC 65
Q+ V+ G+ ++ T++N+W VT ++ T + + GLW +C
Sbjct: 5 QIWALVSGVGGFGALVAATTSNEWKVTTRASSVITATWVYQ----GLWMNCA-------- 52
Query: 66 KPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRAQLAGV 125
GY+QACR LMIAA LG + L + C ++G AK + A LAG+
Sbjct: 53 ----------GYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGS-DKAKAKIACLAGI 101
Query: 126 LLILLALCALVATIWFPVCAHRETT----------IVSFGYSLYAGWIGAVLCLVGGCVI 175
+ IL LC++ + A++ TT G +L+ GW GA LC++GG VI
Sbjct: 102 VFILSGLCSMTGCSLY---ANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGG-VI 157
Query: 176 LC 177
C
Sbjct: 158 FC 159
>gi|47716519 claudin 20 [Homo sapiens]
Length = 219
Score = 69.7 bits (169), Expect = 2e-12
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 12/183 (6%)
Query: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVM-A 59
M + LQ++ F+ + G GV+ T +W V + +L GLW DC +
Sbjct: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQL--HGLWMDCTWYS 58
Query: 60 TGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRR 119
TG++ C IL LP +VQA RA M+ A VL I + C R+G + K
Sbjct: 59 TGMFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGD-RETKSHA 117
Query: 120 AQLAGVLLILLALCALVATIWFP---VCAHRETTIVSF-----GYSLYAGWIGAVLCLVG 171
+ GV + + +L++T+W+ + + T+ G ++Y G+I A+L +
Sbjct: 118 SFAGGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFIS 177
Query: 172 GCV 174
G +
Sbjct: 178 GMI 180
>gi|5729970 claudin 16 [Homo sapiens]
Length = 305
Score = 68.9 bits (167), Expect = 3e-12
Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 22/208 (10%)
Query: 1 MVATCLQVVGFVTSFVGWIG---VIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCV 57
++AT ++ ++ F + +IV T T+ W+V ++ K +GLW +CV
Sbjct: 67 LLATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNADDSLEVSTKC-----RGLWWECV 121
Query: 58 MAT--GLYHCKPLVDILIL-PGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGV 114
G+ C IL P + RALMI A +L L LL L C++ +
Sbjct: 122 TNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGFGFLTLLLGLDCVKFLPDEPY 181
Query: 115 AKYRRAQLAGVLLILLALCALVATIWFPVCAHRE-TTIV----------SFGYSLYAGWI 163
K R +AG L++ ++ ++W+ V + E +T+V FG+S + G
Sbjct: 182 IKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLVLHNIFLGIQYKFGWSCWLGMA 241
Query: 164 GAVLCLVGGCVILCCAGDAQAFGENRFY 191
G++ C + G V+ CC + G R Y
Sbjct: 242 GSLGCFLAGAVLTCCLYLFKDVGPERNY 269
>gi|6912316 claudin 17 [Homo sapiens]
Length = 224
Score = 68.6 bits (166), Expect = 4e-12
Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 18/194 (9%)
Query: 6 LQVVGFVTSFVGWIGVIVTTSTNDWVVTC--GYTIPTCRKLDELGSKGLWADCV-MATGL 62
LQ+ G V F+G +G + TT W V+ G I +L E GLW +C+ A
Sbjct: 6 LQIAGLVLGFLGMVGTLATTLLPQWRVSAFVGSNIIVFERLWE----GLWMNCIRQARVR 61
Query: 63 YHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRAQL 122
CK +L LP ++ RALM A L L A+L+ + + ++ AK
Sbjct: 62 LQCKFYSSLLALPPALETARALMCVAVALSLIALLIGICGMKQVQCTGSNERAKAYLLGT 121
Query: 123 AGVLLILLALCALVATIWFPVCAHRETTIVS--------FGYSLYAGWIGAVLCLVGG-- 172
+GVL IL + L+ W R+ + G +L+ GW A + +GG
Sbjct: 122 SGVLFILTGIFVLIPVSWTANIIIRDFYNPAIHIGQKRELGAALFLGWASAAVLFIGGGL 181
Query: 173 -CVILCCAGDAQAF 185
C CC Q +
Sbjct: 182 LCGFCCCNRKKQGY 195
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.141 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,806,994
Number of Sequences: 37866
Number of extensions: 311781
Number of successful extensions: 936
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 826
Number of HSP's gapped (non-prelim): 65
length of query: 207
length of database: 18,247,518
effective HSP length: 98
effective length of query: 109
effective length of database: 14,536,650
effective search space: 1584494850
effective search space used: 1584494850
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.