CLDN1 254

Name: CLDN1	Sequence: fasta or formatted (211aa)		NCBI GI: 10863887
Description: claudin 1		Referenced in: Gap Junctions and Tight Junctions
Composition: Amino acid Percentage Count Longest homopolymer A alanine 11.8 25 3 C cysteine 3.8 8 2 D aspartate 2.8 6 2 E glutamate 2.4 5 1 F phenylalanine 3.8 8 1 G glycine 9.0 19 2 H histidine 0.0 0 0 I isoleucine 6.2 13 1 K lysine 3.3 7 1 L leucine 11.8 25 2 M methionine 4.3 9 1 N asparagine 2.4 5 1 P proline 4.7 10 1 Q glutamine 4.7 10 1 R arginine 3.3 7 1 S serine 6.2 13 2 T threonine 5.7 12 2 V valine 7.1 15 2 W tryptophan 2.4 5 1 Y tyrosine 4.3 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 claudin 1 CLDN7 0.621 claudin 7 CLDN19 0.582 claudin 19 isoform b CLDN19 0.579 claudin 19 isoform a CLDN4 0.465 claudin 4 CLDN3 0.465 claudin 3 CLDN9 0.458 claudin 9 CLDN6 0.431 claudin 6 CLDN5 0.428 claudin 5 CLDN5 0.428 claudin 5 CLDN14 0.413 claudin 14 CLDN14 0.413 claudin 14 CLDN14 0.413 claudin 14 CLDN14 0.413 claudin 14 CLDN14 0.413 claudin 14 CLDN17 0.374 claudin 17 CLDN8 0.361 claudin 8 CLDN2 0.327 claudin 2 CLDN20 0.302 claudin 20 CLDN10 0.282 claudin 10 isoform b CLDN18 0.282 claudin 18 isoform 1 CLDN18 0.277 claudin 18 isoform 2 CLDN15 0.277 claudin 15 CLDN10 0.257 claudin 10 isoform a CLDN24 0.257 PREDICTED: claudin-24-like CLDN24 0.257 PREDICTED: claudin-24-like CLDN24 0.250 PREDICTED: claudin-24-like CLDN22 0.235 claudin 22 CLDN10 0.215 claudin 10 isoform a_i1 LOC644672 0.213 claudin-like Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.