Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CLDN14 Sequence: fasta or formatted (239aa) NCBI GI: 6912314
Description:

claudin 14

Referenced in:

Gap Junctions and Tight Junctions

Other entries for this name:
alt mRNA [239aa] claudin 14
alt mRNA [239aa] claudin 14
alt mRNA [239aa] claudin 14
alt mRNA [239aa] claudin 14
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         27           2
 C cysteine            4.2         10           1
 D aspartate           2.1          5           1
 E glutamate           1.3          3           1
 F phenylalanine       2.9          7           1
 G glycine             7.5         18           2
 H histidine           1.7          4           1
 I isoleucine          5.4         13           1
 K lysine              2.5          6           1
 L leucine            13.4         32           2
 M methionine          2.9          7           1
 N asparagine          2.9          7           1
 P proline             5.4         13           2
 Q glutamine           4.2         10           1
 R arginine            3.8          9           2
 S serine              7.1         17           3
 T threonine           9.6         23           4
 V valine              5.4         13           2
 W tryptophan          1.7          4           1
 Y tyrosine            4.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   claudin 14 
CLDN14                1.000   claudin 14 
CLDN14                1.000   claudin 14 
CLDN14                1.000   claudin 14 
CLDN14                1.000   claudin 14 
CLDN2                 0.426   claudin 2 
CLDN4                 0.370   claudin 4 
CLDN3                 0.366   claudin 3 
CLDN1                 0.361   claudin 1 
CLDN9                 0.351   claudin 9 
CLDN19                0.348   claudin 19 isoform a 
CLDN7                 0.344   claudin 7 
CLDN19                0.344   claudin 19 isoform b 
CLDN6                 0.329   claudin 6 
CLDN20                0.318   claudin 20 
CLDN17                0.305   claudin 17 
CLDN5                 0.305   claudin 5 
CLDN5                 0.305   claudin 5 
CLDN8                 0.297   claudin 8 
CLDN15                0.234   claudin 15 
CLDN10                0.221   claudin 10 isoform b 
CLDN18                0.216   claudin 18 isoform 2 
CLDN18                0.210   claudin 18 isoform 1 
CLDN24                0.197   PREDICTED: claudin-24-like 
CLDN24                0.197   PREDICTED: claudin-24-like 
CLDN24                0.193   PREDICTED: claudin-24-like 
CLDN10                0.180   claudin 10 isoform a 
CLDN22                0.177   claudin 22 
LOC644672             0.158   claudin-like 
CLDN10                0.149   claudin 10 isoform a_i1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press