Guide to the Human Genome
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Name: CLDN5 Sequence: fasta or formatted (303aa) NCBI GI: 195947374
Description:

claudin 5

Referenced in:

Gap Junctions and Tight Junctions

Other entries for this name:
alt mRNA [303aa] claudin 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         41           2
 C cysteine            4.3         13           2
 D aspartate           2.0          6           1
 E glutamate           2.3          7           1
 F phenylalanine       2.6          8           1
 G glycine            12.2         37           2
 H histidine           1.0          3           1
 I isoleucine          2.0          6           1
 K lysine              3.0          9           2
 L leucine            11.6         35           2
 M methionine          2.0          6           1
 N asparagine          1.3          4           1
 P proline             6.3         19           2
 Q glutamine           4.0         12           1
 R arginine            5.6         17           2
 S serine              5.3         16           1
 T threonine           6.3         19           2
 V valine              9.6         29           2
 W tryptophan          2.6          8           1
 Y tyrosine            2.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   claudin 5 
CLDN5                 1.000   claudin 5 
CLDN9                 0.365   claudin 9 
CLDN6                 0.360   claudin 6 
CLDN3                 0.356   claudin 3 
CLDN4                 0.338   claudin 4 
CLDN1                 0.289   claudin 1 
CLDN7                 0.283   claudin 7 
CLDN19                0.271   claudin 19 isoform a 
CLDN19                0.271   claudin 19 isoform b 
CLDN8                 0.269   claudin 8 
CLDN17                0.237   claudin 17 
CLDN14                0.236   claudin 14 
CLDN14                0.236   claudin 14 
CLDN14                0.236   claudin 14 
CLDN14                0.236   claudin 14 
CLDN14                0.236   claudin 14 
CLDN2                 0.207   claudin 2 
CLDN10                0.187   claudin 10 isoform b 
CLDN20                0.181   claudin 20 
CLDN15                0.181   claudin 15 
CLDN10                0.162   claudin 10 isoform a 
CLDN24                0.157   PREDICTED: claudin-24-like 
CLDN18                0.156   claudin 18 isoform 1 
CLDN24                0.154   PREDICTED: claudin-24-like 
CLDN24                0.154   PREDICTED: claudin-24-like 
CLDN18                0.151   claudin 18 isoform 2 
CLDN22                0.147   claudin 22 
CLDN10                0.134   claudin 10 isoform a_i1 
LOC644672             0.130   claudin-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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