Guide to the Human Genome
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Name: CLDN10 Sequence: fasta or formatted (207aa) NCBI GI: 231569235
Description:

claudin 10 isoform a_i1

Referenced in:

Gap Junctions and Tight Junctions

Other entries for this name:
alt prot [226aa] claudin 10 isoform a
alt prot [228aa] claudin 10 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         23           2
 C cysteine            3.9          8           1
 D aspartate           2.4          5           1
 E glutamate           2.4          5           1
 F phenylalanine       6.8         14           2
 G glycine            11.1         23           2
 H histidine           0.5          1           1
 I isoleucine          6.8         14           2
 K lysine              6.3         13           1
 L leucine             6.8         14           1
 M methionine          2.9          6           1
 N asparagine          3.9          8           2
 P proline             1.4          3           1
 Q glutamine           2.4          5           1
 R arginine            2.4          5           1
 S serine              8.7         18           2
 T threonine           7.7         16           2
 V valine              6.3         13           1
 W tryptophan          2.4          5           1
 Y tyrosine            3.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   claudin 10 isoform a_i1 
CLDN10                0.970   claudin 10 isoform a 
CLDN10                0.769   claudin 10 isoform b 
CLDN15                0.283   claudin 15 
CLDN19                0.276   claudin 19 isoform a 
CLDN19                0.276   claudin 19 isoform b 
CLDN7                 0.261   claudin 7 
CLDN18                0.223   claudin 18 isoform 2 
CLDN8                 0.221   claudin 8 
CLDN1                 0.218   claudin 1 
CLDN18                0.213   claudin 18 isoform 1 
CLDN3                 0.208   claudin 3 
CLDN5                 0.201   claudin 5 
CLDN5                 0.201   claudin 5 
CLDN4                 0.188   claudin 4 
CLDN17                0.185   claudin 17 
CLDN14                0.173   claudin 14 
CLDN14                0.173   claudin 14 
CLDN6                 0.173   claudin 6 
CLDN14                0.173   claudin 14 
CLDN14                0.173   claudin 14 
CLDN14                0.173   claudin 14 
CLDN20                0.173   claudin 20 
CLDN9                 0.168   claudin 9 
CLDN2                 0.160   claudin 2 
CLDN11                0.113   claudin 11 
CLDN22                0.098   claudin 22 
CLDN24                0.098   PREDICTED: claudin-24-like 
CLDN24                0.098   PREDICTED: claudin-24-like 
CLDN24                0.098   PREDICTED: claudin-24-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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