Guide to the Human Genome
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Name: CLDN10 Sequence: fasta or formatted (226aa) NCBI GI: 33598916
Description:

claudin 10 isoform a

Referenced in:

Gap Junctions and Tight Junctions

Other entries for this name:
alt prot [207aa] claudin 10 isoform a_i1
alt prot [228aa] claudin 10 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         25           2
 C cysteine            4.0          9           1
 D aspartate           2.2          5           1
 E glutamate           2.2          5           1
 F phenylalanine       7.5         17           2
 G glycine            11.1         25           2
 H histidine           1.3          3           1
 I isoleucine          6.6         15           2
 K lysine              6.2         14           1
 L leucine             6.6         15           1
 M methionine          2.7          6           1
 N asparagine          4.0          9           2
 P proline             1.8          4           1
 Q glutamine           2.2          5           1
 R arginine            2.7          6           1
 S serine              8.4         19           2
 T threonine           7.5         17           2
 V valine              6.2         14           1
 W tryptophan          2.2          5           1
 Y tyrosine            3.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   claudin 10 isoform a 
CLDN10                0.880   claudin 10 isoform a_i1 
CLDN10                0.730   claudin 10 isoform b 
CLDN15                0.295   claudin 15 
CLDN19                0.289   claudin 19 isoform a 
CLDN19                0.289   claudin 19 isoform b 
CLDN7                 0.273   claudin 7 
CLDN18                0.250   claudin 18 isoform 1 
CLDN18                0.248   claudin 18 isoform 2 
CLDN1                 0.236   claudin 1 
CLDN8                 0.230   claudin 8 
CLDN3                 0.225   claudin 3 
CLDN5                 0.220   claudin 5 
CLDN5                 0.220   claudin 5 
CLDN4                 0.207   claudin 4 
CLDN17                0.195   claudin 17 
CLDN6                 0.191   claudin 6 
CLDN14                0.189   claudin 14 
CLDN14                0.189   claudin 14 
CLDN14                0.189   claudin 14 
CLDN14                0.189   claudin 14 
CLDN14                0.189   claudin 14 
CLDN9                 0.186   claudin 9 
CLDN20                0.186   claudin 20 
CLDN2                 0.177   claudin 2 
CLDN11                0.143   claudin 11 
CLDN22                0.109   claudin 22 
CLDN24                0.107   PREDICTED: claudin-24-like 
CLDN24                0.107   PREDICTED: claudin-24-like 
CLDN24                0.107   PREDICTED: claudin-24-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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