Guide to the Human Genome
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Name: CLDN24 Sequence: fasta or formatted (220aa) NCBI GI: 169167239
Description:

PREDICTED: claudin-24-like

Referenced in:

Gap Junctions and Tight Junctions

Other entries for this name:
alt prot [220aa] PREDICTED: claudin-24-like
alt mRNA [220aa] PREDICTED: claudin-24-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         16           2
 C cysteine            3.2          7           1
 D aspartate           4.1          9           1
 E glutamate           5.0         11           2
 F phenylalanine       5.5         12           1
 G glycine             9.1         20           2
 H histidine           1.8          4           1
 I isoleucine          4.5         10           2
 K lysine              1.8          4           1
 L leucine            17.7         39           3
 M methionine          3.2          7           1
 N asparagine          3.2          7           1
 P proline             3.6          8           1
 Q glutamine           4.5         10           1
 R arginine            3.6          8           2
 S serine              6.4         14           2
 T threonine           4.1          9           2
 V valine              5.9         13           1
 W tryptophan          4.1          9           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: claudin-24-like 
CLDN24                1.000   PREDICTED: claudin-24-like 
CLDN24                0.993   PREDICTED: claudin-24-like 
CLDN22                0.865   claudin 22 
LOC644672             0.471   claudin-like 
CLDN6                 0.244   claudin 6 
CLDN1                 0.241   claudin 1 
CLDN7                 0.237   claudin 7 
CLDN8                 0.234   claudin 8 
CLDN9                 0.227   claudin 9 
CLDN4                 0.213   claudin 4 
CLDN5                 0.213   claudin 5 
CLDN5                 0.213   claudin 5 
CLDN19                0.211   claudin 19 isoform a 
CLDN19                0.211   claudin 19 isoform b 
CLDN14                0.211   claudin 14 
CLDN14                0.211   claudin 14 
CLDN14                0.211   claudin 14 
CLDN14                0.211   claudin 14 
CLDN14                0.211   claudin 14 
CLDN3                 0.206   claudin 3 
CLDN18                0.200   claudin 18 isoform 1 
CLDN18                0.200   claudin 18 isoform 2 
CLDN17                0.197   claudin 17 
CLDN2                 0.174   claudin 2 
CLDN10                0.174   claudin 10 isoform b 
CLDN15                0.165   claudin 15 
CLDN20                0.132   claudin 20 
CLDN11                0.121   claudin 11 
CLDN10                0.109   claudin 10 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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