Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CLDN19 Sequence: fasta or formatted (211aa) NCBI GI: 183979975
Description:

claudin 19 isoform b

Referenced in:

Gap Junctions and Tight Junctions

Other entries for this name:
alt prot [224aa] claudin 19 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         28           3
 C cysteine            3.3          7           2
 D aspartate           1.9          4           1
 E glutamate           2.8          6           1
 F phenylalanine       3.8          8           2
 G glycine            10.9         23           2
 H histidine           0.5          1           1
 I isoleucine          3.8          8           2
 K lysine              1.9          4           1
 L leucine            11.8         25           2
 M methionine          2.4          5           1
 N asparagine          2.4          5           1
 P proline             5.7         12           1
 Q glutamine           4.3          9           1
 R arginine            3.3          7           1
 S serine              8.5         18           2
 T threonine           4.7         10           1
 V valine              8.5         18           2
 W tryptophan          2.4          5           1
 Y tyrosine            3.8          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   claudin 19 isoform b 
CLDN19                0.993   claudin 19 isoform a 
CLDN1                 0.585   claudin 1 
CLDN7                 0.557   claudin 7 
CLDN9                 0.420   claudin 9 
CLDN4                 0.418   claudin 4 
CLDN3                 0.415   claudin 3 
CLDN5                 0.403   claudin 5 
CLDN5                 0.403   claudin 5 
CLDN6                 0.396   claudin 6 
CLDN14                0.396   claudin 14 
CLDN14                0.396   claudin 14 
CLDN14                0.396   claudin 14 
CLDN14                0.396   claudin 14 
CLDN14                0.396   claudin 14 
CLDN2                 0.356   claudin 2 
CLDN17                0.346   claudin 17 
CLDN8                 0.338   claudin 8 
CLDN15                0.338   claudin 15 
CLDN10                0.336   claudin 10 isoform b 
CLDN10                0.316   claudin 10 isoform a 
CLDN18                0.303   claudin 18 isoform 2 
CLDN20                0.301   claudin 20 
CLDN18                0.296   claudin 18 isoform 1 
CLDN10                0.274   claudin 10 isoform a_i1 
CLDN24                0.231   PREDICTED: claudin-24-like 
CLDN24                0.226   PREDICTED: claudin-24-like 
CLDN24                0.226   PREDICTED: claudin-24-like 
CLDN22                0.221   claudin 22 
CLDN11                0.199   claudin 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press