Guide to the Human Genome
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Name: CLDN6 Sequence: fasta or formatted (220aa) NCBI GI: 153792768
Description:

claudin 6

Referenced in:

Gap Junctions and Tight Junctions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         24           2
 C cysteine            4.5         10           2
 D aspartate           1.8          4           1
 E glutamate           2.7          6           2
 F phenylalanine       1.8          4           1
 G glycine             9.5         21           3
 H histidine           0.9          2           1
 I isoleucine          4.5         10           2
 K lysine              3.2          7           1
 L leucine            14.5         32           4
 M methionine          2.7          6           1
 N asparagine          1.8          4           1
 P proline             4.1          9           1
 Q glutamine           4.1          9           1
 R arginine            2.7          6           1
 S serine              8.2         18           1
 T threonine           5.0         11           2
 V valine             10.5         23           2
 W tryptophan          2.7          6           1
 Y tyrosine            3.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   claudin 6 
CLDN9                 0.706   claudin 9 
CLDN4                 0.618   claudin 4 
CLDN3                 0.585   claudin 3 
CLDN5                 0.513   claudin 5 
CLDN5                 0.513   claudin 5 
CLDN1                 0.415   claudin 1 
CLDN7                 0.413   claudin 7 
CLDN8                 0.411   claudin 8 
CLDN17                0.406   claudin 17 
CLDN19                0.384   claudin 19 isoform a 
CLDN19                0.379   claudin 19 isoform b 
CLDN14                0.363   claudin 14 
CLDN14                0.363   claudin 14 
CLDN14                0.363   claudin 14 
CLDN14                0.363   claudin 14 
CLDN14                0.363   claudin 14 
CLDN2                 0.351   claudin 2 
CLDN20                0.255   claudin 20 
CLDN24                0.253   PREDICTED: claudin-24-like 
CLDN10                0.253   claudin 10 isoform b 
CLDN24                0.251   PREDICTED: claudin-24-like 
CLDN24                0.251   PREDICTED: claudin-24-like 
CLDN15                0.243   claudin 15 
CLDN22                0.239   claudin 22 
CLDN18                0.234   claudin 18 isoform 1 
CLDN18                0.232   claudin 18 isoform 2 
LOC644672             0.203   claudin-like 
CLDN10                0.200   claudin 10 isoform a 
CLDN10                0.165   claudin 10 isoform a_i1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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