Guide to the Human Genome
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Name: CLDN7 Sequence: fasta or formatted (211aa) NCBI GI: 153792186
Description:

claudin 7

Referenced in:

Gap Junctions and Tight Junctions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         25           2
 C cysteine            3.8          8           1
 D aspartate           2.8          6           2
 E glutamate           1.4          3           1
 F phenylalanine       3.3          7           1
 G glycine            10.9         23           3
 H histidine           0.5          1           1
 I isoleucine          6.2         13           2
 K lysine              4.7         10           2
 L leucine            10.0         21           2
 M methionine          6.2         13           2
 N asparagine          2.8          6           1
 P proline             3.3          7           1
 Q glutamine           3.3          7           1
 R arginine            2.4          5           1
 S serine              8.5         18           2
 T threonine           4.3          9           1
 V valine              7.1         15           2
 W tryptophan          2.4          5           1
 Y tyrosine            4.3          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   claudin 7 
CLDN1                 0.621   claudin 1 
CLDN19                0.554   claudin 19 isoform b 
CLDN19                0.545   claudin 19 isoform a 
CLDN4                 0.455   claudin 4 
CLDN3                 0.453   claudin 3 
CLDN9                 0.446   claudin 9 
CLDN6                 0.428   claudin 6 
CLDN5                 0.418   claudin 5 
CLDN5                 0.418   claudin 5 
CLDN14                0.394   claudin 14 
CLDN14                0.394   claudin 14 
CLDN14                0.394   claudin 14 
CLDN14                0.394   claudin 14 
CLDN14                0.394   claudin 14 
CLDN8                 0.394   claudin 8 
CLDN17                0.369   claudin 17 
CLDN2                 0.351   claudin 2 
CLDN20                0.339   claudin 20 
CLDN10                0.329   claudin 10 isoform b 
CLDN15                0.319   claudin 15 
CLDN10                0.297   claudin 10 isoform a 
CLDN18                0.287   claudin 18 isoform 2 
CLDN18                0.285   claudin 18 isoform 1 
CLDN24                0.257   PREDICTED: claudin-24-like 
CLDN10                0.257   claudin 10 isoform a_i1 
CLDN24                0.252   PREDICTED: claudin-24-like 
CLDN24                0.252   PREDICTED: claudin-24-like 
CLDN22                0.252   claudin 22 
LOC644672             0.196   claudin-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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