Guide to the Human Genome
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Name: CLDN24 Sequence: fasta or formatted (220aa) NCBI GI: 169166402
Description:

PREDICTED: claudin-24-like

Referenced in:

Gap Junctions and Tight Junctions

Other entries for this name:
alt prot [220aa] PREDICTED: claudin-24-like
alt prot [220aa] PREDICTED: claudin-24-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         16           2
 C cysteine            3.2          7           1
 D aspartate           4.1          9           1
 E glutamate           5.0         11           2
 F phenylalanine       5.0         11           1
 G glycine             9.1         20           2
 H histidine           1.8          4           1
 I isoleucine          4.5         10           2
 K lysine              1.8          4           1
 L leucine            18.2         40           3
 M methionine          3.2          7           1
 N asparagine          3.2          7           1
 P proline             3.6          8           1
 Q glutamine           4.5         10           1
 R arginine            3.6          8           2
 S serine              6.4         14           2
 T threonine           4.1          9           2
 V valine              5.9         13           1
 W tryptophan          4.1          9           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: claudin-24-like 
CLDN24                0.995   PREDICTED: claudin-24-like 
CLDN24                0.995   PREDICTED: claudin-24-like 
CLDN22                0.870   claudin 22 
LOC644672             0.474   claudin-like 
CLDN6                 0.247   claudin 6 
CLDN7                 0.242   claudin 7 
CLDN1                 0.235   claudin 1 
CLDN8                 0.235   claudin 8 
CLDN9                 0.230   claudin 9 
CLDN5                 0.219   claudin 5 
CLDN5                 0.219   claudin 5 
CLDN4                 0.216   claudin 4 
CLDN19                0.216   claudin 19 isoform a 
CLDN19                0.216   claudin 19 isoform b 
CLDN3                 0.209   claudin 3 
CLDN14                0.207   claudin 14 
CLDN14                0.207   claudin 14 
CLDN14                0.207   claudin 14 
CLDN14                0.207   claudin 14 
CLDN14                0.207   claudin 14 
CLDN18                0.202   claudin 18 isoform 2 
CLDN18                0.202   claudin 18 isoform 1 
CLDN17                0.191   claudin 17 
CLDN2                 0.179   claudin 2 
CLDN10                0.174   claudin 10 isoform b 
CLDN15                0.167   claudin 15 
CLDN20                0.135   claudin 20 
CLDN11                0.116   claudin 11 
CLDN10                0.109   claudin 10 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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