Guide to the Human Genome
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Name: PPP1R12B Sequence: fasta or formatted (208aa) NCBI GI: 14195597
Description:

protein phosphatase 1, regulatory (inhibitor) subunit 12B isoform c

Referenced in:

Myosin
Serine / Threonine Protein Phosphatases

Other entries for this name:
alt prot [224aa] protein phosphatase 1, regulatory (inhibitor) subunit 12B isoform d
alt prot [998aa] protein phosphatase 1, regulatory (inhibitor) subunit 12B isoform b
alt prot [982aa] protein phosphatase 1, regulatory (inhibitor) subunit 12B isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         13           1
 C cysteine            0.0          0           0
 D aspartate           6.7         14           1
 E glutamate          15.9         33           3
 F phenylalanine       0.5          1           1
 G glycine             3.4          7           2
 H histidine           0.5          1           1
 I isoleucine          2.4          5           1
 K lysine             10.6         22           2
 L leucine             9.6         20           1
 M methionine          2.4          5           1
 N asparagine          3.8          8           1
 P proline             1.0          2           1
 Q glutamine           3.8          8           2
 R arginine           12.0         25           3
 S serine             10.1         21           2
 T threonine           5.8         12           2
 V valine              2.9          6           1
 W tryptophan          1.0          2           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein phosphatase 1, regulatory (inhibitor) subuni... 
PPP1R12B              1.000   protein phosphatase 1, regulatory (inhibitor) subunit...
PPP1R12B              0.907   protein phosphatase 1, regulatory (inhibitor) subuni...
PPP1R12B              0.907   protein phosphatase 1, regulatory (inhibitor) subuni...
PPP1R12A              0.449   protein phosphatase 1, regulatory (inhibitor) subun...
PPP1R12A              0.449   protein phosphatase 1, regulatory (inhibitor) subun...
PPP1R12A              0.449   protein phosphatase 1, regulatory (inhibitor) subunit...
PPP1R12C              0.231   protein phosphatase 1, regulatory subunit 12C 
CALD1                 0.077   caldesmon 1 isoform 5 
CALD1                 0.077   caldesmon 1 isoform 2 
CALD1                 0.074   caldesmon 1 isoform 1 
NEXN                  0.074   nexilin (F actin binding protein) 
TPM2                  0.074   tropomyosin 2 (beta) isoform 1 
CALD1                 0.072   caldesmon 1 isoform 4 
CALD1                 0.072   caldesmon 1 isoform 3 
TPM3                  0.069   tropomyosin 3 isoform 1 
RBM25                 0.066   RNA binding motif protein 25 
TPR                   0.066   nuclear pore complex-associated protein TPR 
DDX23                 0.066   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
LOC645202             0.061   PREDICTED: hypothetical protein LOC645202 
MTUS1                 0.061   mitochondrial tumor suppressor 1 isoform 5 
MTUS1                 0.061   mitochondrial tumor suppressor 1 isoform 1 
MTUS1                 0.061   mitochondrial tumor suppressor 1 isoform 2 
MTUS1                 0.061   mitochondrial tumor suppressor 1 isoform 4 
LOC283767             0.059   golgi autoantigen, golgin subfamily a-like 
LOC100286959          0.059   PREDICTED: hypothetical protein XP_002343921 
CGNL1                 0.059   cingulin-like 1 
LOC100133599          0.059   PREDICTED: hypothetical protein 
TPM1                  0.059   tropomyosin 1 alpha chain isoform 1 
TPM1                  0.059   tropomyosin 1 alpha chain isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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