Guide to the Human Genome
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Name: NEXN Sequence: fasta or formatted (675aa) NCBI GI: 148839339
Description:

nexilin (F actin binding protein)

Referenced in:

Cytoskeleton

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         37           2
 C cysteine            0.6          4           1
 D aspartate           4.6         31           3
 E glutamate          20.6        139           7
 F phenylalanine       3.1         21           1
 G glycine             3.7         25           2
 H histidine           0.4          3           1
 I isoleucine          4.6         31           1
 K lysine             12.0         81           2
 L leucine             5.9         40           2
 M methionine          2.8         19           1
 N asparagine          3.0         20           2
 P proline             2.8         19           1
 Q glutamine           5.3         36           1
 R arginine           10.1         68           3
 S serine              5.2         35           3
 T threonine           3.7         25           1
 V valine              3.4         23           2
 W tryptophan          0.6          4           2
 Y tyrosine            2.1         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nexilin (F actin binding protein) 
TCHH                  0.097   trichohyalin 
CALD1                 0.082   caldesmon 1 isoform 1 
LOC727832             0.075   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.072   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.072   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC440243             0.060   PREDICTED: Putative golgin subfamily A member 6-lik...
PLEC1                 0.060   plectin 1 isoform 11 
PLEC1                 0.060   plectin 1 isoform 10 
PLEC1                 0.060   plectin 1 isoform 8 
PLEC1                 0.060   plectin 1 isoform 7 
PLEC1                 0.060   plectin 1 isoform 6 
PLEC1                 0.060   plectin 1 isoform 3 
PLEC1                 0.060   plectin 1 isoform 2 
PLEC1                 0.060   plectin 1 isoform 1 
LOC283767             0.059   golgi autoantigen, golgin subfamily a-like 
MYH10                 0.058   myosin, heavy polypeptide 10, non-muscle 
MYH11                 0.056   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.056   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.056   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.056   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
LOC100286959          0.056   PREDICTED: hypothetical protein XP_002343921 
MYH9                  0.055   myosin, heavy polypeptide 9, non-muscle 
WDR87                 0.054   NYD-SP11 protein 
LOC100133758          0.054   PREDICTED: hypothetical protein, partial 
LOC645202             0.052   PREDICTED: hypothetical protein LOC645202 
CALD1                 0.052   caldesmon 1 isoform 4 
CALD1                 0.052   caldesmon 1 isoform 3 
ANKRD12               0.051   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.051   ankyrin repeat domain 12 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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