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Search of human proteins with 14165410
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14165410 protocadherin alpha 3 isoform 2 precursor [Homo
sapiens]
(824 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14165410 protocadherin alpha 3 isoform 2 precursor [Homo sapi... 1617 0.0
gi|9256586 protocadherin alpha 3 isoform 1 precursor [Homo sapiens] 1561 0.0
gi|14165413 protocadherin alpha 4 isoform 2 precursor [Homo sapi... 1275 0.0
gi|9256588 protocadherin alpha 4 isoform 1 precursor [Homo sapiens] 1272 0.0
gi|14165390 protocadherin alpha 6 isoform 2 precursor [Homo sapi... 1253 0.0
gi|9256592 protocadherin alpha 6 isoform 1 precursor [Homo sapiens] 1247 0.0
gi|14165397 protocadherin alpha 13 isoform 2 precursor [Homo sap... 1240 0.0
gi|14165422 protocadherin alpha 8 isoform 2 precursor [Homo sapi... 1239 0.0
gi|7662068 protocadherin alpha 9 isoform 2 precursor [Homo sapiens] 1238 0.0
gi|9256580 protocadherin alpha 13 isoform 1 precursor [Homo sapi... 1237 0.0
gi|14165425 protocadherin alpha 9 isoform 1 precursor [Homo sapi... 1236 0.0
gi|9256596 protocadherin alpha 8 isoform 1 precursor [Homo sapiens] 1234 0.0
gi|9256594 protocadherin alpha 7 isoform 1 precursor [Homo sapiens] 1233 0.0
gi|14165419 protocadherin alpha 7 isoform 2 precursor [Homo sapi... 1230 0.0
gi|14165405 protocadherin alpha 2 isoform 2 precursor [Homo sapi... 1228 0.0
gi|9256584 protocadherin alpha 2 isoform 1 precursor [Homo sapiens] 1226 0.0
gi|14165400 protocadherin alpha 1 isoform 2 precursor [Homo sapi... 1224 0.0
gi|9256582 protocadherin alpha 1 isoform 1 precursor [Homo sapiens] 1220 0.0
gi|9256590 protocadherin alpha 5 isoform 1 precursor [Homo sapiens] 1214 0.0
gi|14165416 protocadherin alpha 5 isoform 2 precursor [Homo sapi... 1211 0.0
gi|14165381 protocadherin alpha 10 isoform 2 precursor [Homo sap... 1194 0.0
gi|9256574 protocadherin alpha 10 isoform 1 precursor [Homo sapi... 1188 0.0
gi|14165387 protocadherin alpha 11 isoform 2 precursor [Homo sap... 1184 0.0
gi|9256576 protocadherin alpha 11 isoform 1 precursor [Homo sapi... 1184 0.0
gi|14165392 protocadherin alpha 12 isoform 2 precursor [Homo sap... 1169 0.0
gi|9256578 protocadherin alpha 12 isoform 1 precursor [Homo sapi... 1169 0.0
gi|14165394 protocadherin alpha 6 isoform 3 precursor [Homo sapi... 804 0.0
gi|14165402 protocadherin alpha 1 isoform 3 precursor [Homo sapi... 795 0.0
gi|14165383 protocadherin alpha 10 isoform 3 precursor [Homo sap... 774 0.0
gi|14277677 protocadherin gamma subfamily C, 3 isoform 2 precurs... 614 e-176
>gi|14165410 protocadherin alpha 3 isoform 2 precursor [Homo
sapiens]
Length = 824
Score = 1617 bits (4187), Expect = 0.0
Identities = 824/824 (100%), Positives = 824/824 (100%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
Sbjct: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
Sbjct: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL
Sbjct: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP
Sbjct: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG
Sbjct: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL
Sbjct: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA
Sbjct: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT
Sbjct: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP
Sbjct: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
Query: 781 ISRDREEKQDVDVDLSAKVSNFYLFFPKCLCFSFLNVSTPLEIH 824
ISRDREEKQDVDVDLSAKVSNFYLFFPKCLCFSFLNVSTPLEIH
Sbjct: 781 ISRDREEKQDVDVDLSAKVSNFYLFFPKCLCFSFLNVSTPLEIH 824
>gi|9256586 protocadherin alpha 3 isoform 1 precursor [Homo sapiens]
Length = 950
Score = 1561 bits (4043), Expect = 0.0
Identities = 798/798 (100%), Positives = 798/798 (100%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
Sbjct: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
Sbjct: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL
Sbjct: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP
Sbjct: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG
Sbjct: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL
Sbjct: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA
Sbjct: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT
Sbjct: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP
Sbjct: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
Query: 781 ISRDREEKQDVDVDLSAK 798
ISRDREEKQDVDVDLSAK
Sbjct: 781 ISRDREEKQDVDVDLSAK 798
>gi|14165413 protocadherin alpha 4 isoform 2 precursor [Homo
sapiens]
Length = 798
Score = 1275 bits (3299), Expect = 0.0
Identities = 657/800 (82%), Positives = 707/800 (88%), Gaps = 3/800 (0%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
M FSW ++ LLL LLLLAA E G+GQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
Sbjct: 1 MEFSWGSGQESRRLLLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFRVASK G LLEVNLQNGILFVNSRIDREELC RSAECSIHLEVIVDRPLQVFHV+
Sbjct: 61 PRLFRVASKGRGGLLEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVD 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
VEV+DINDN PVFP KNL I+ESR SRF LEGASDADIG N+LLTY L EYF+L
Sbjct: 121 VEVRDINDNPPVFPATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSL 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
+ +DE +K LGL+L+K+L+RE+ P+ +L++TA DGGKPELTGT QL ITVLD NDNAP
Sbjct: 181 EKPPDDELVKGLGLILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
AF+RTIYKVRLLEN PNGTLV+ +NA+DLDEG+N DI YSF+ D+S ++ SKFH+DP+ G
Sbjct: 241 AFDRTIYKVRLLENVPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
QI VKG IDFEESKSYEI VE DKG P+S HC V++E+ D NDNVP+L +SLSLP+
Sbjct: 301 QIIVKGYIDFEESKSYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIR 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
ED+PL TVIALISVSD+D GVNG VTCSLT HVPFKLVSTFKNYYSLVLDS LDRESVSA
Sbjct: 361 EDAPLGTVIALISVSDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATASVSVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSA
Sbjct: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQV+ARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL PR GG GGAVSELVP SVG GHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDE DAPRHRLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVLVSLVESGQAPKASS+A GA GP+AALVDVNVYLI+AICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCSA PTEG C PGKPTLVCSSAVGSWSYSQQR+ RVCSGEG PKTDLMAFSPSLP
Sbjct: 721 LRCSALPTEGACAPGKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSLPD-- 778
Query: 781 ISRDREEKQDVDVDLSAKVS 800
SRDRE++ + AKVS
Sbjct: 779 -SRDREDQLQTTEESFAKVS 797
>gi|9256588 protocadherin alpha 4 isoform 1 precursor [Homo sapiens]
Length = 947
Score = 1272 bits (3291), Expect = 0.0
Identities = 655/798 (82%), Positives = 705/798 (88%), Gaps = 3/798 (0%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
M FSW ++ LLL LLLLAA E G+GQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
Sbjct: 1 MEFSWGSGQESRRLLLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFRVASK G LLEVNLQNGILFVNSRIDREELC RSAECSIHLEVIVDRPLQVFHV+
Sbjct: 61 PRLFRVASKGRGGLLEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVD 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
VEV+DINDN PVFP KNL I+ESR SRF LEGASDADIG N+LLTY L EYF+L
Sbjct: 121 VEVRDINDNPPVFPATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSL 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
+ +DE +K LGL+L+K+L+RE+ P+ +L++TA DGGKPELTGT QL ITVLD NDNAP
Sbjct: 181 EKPPDDELVKGLGLILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
AF+RTIYKVRLLEN PNGTLV+ +NA+DLDEG+N DI YSF+ D+S ++ SKFH+DP+ G
Sbjct: 241 AFDRTIYKVRLLENVPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
QI VKG IDFEESKSYEI VE DKG P+S HC V++E+ D NDNVP+L +SLSLP+
Sbjct: 301 QIIVKGYIDFEESKSYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIR 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
ED+PL TVIALISVSD+D GVNG VTCSLT HVPFKLVSTFKNYYSLVLDS LDRESVSA
Sbjct: 361 EDAPLGTVIALISVSDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATASVSVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSA
Sbjct: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQV+ARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL PR GG GGAVSELVP SVG GHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDE DAPRHRLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVLVSLVESGQAPKASS+A GA GP+AALVDVNVYLI+AICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCSA PTEG C PGKPTLVCSSAVGSWSYSQQR+ RVCSGEG PKTDLMAFSPSLP
Sbjct: 721 LRCSALPTEGACAPGKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSLPD-- 778
Query: 781 ISRDREEKQDVDVDLSAK 798
SRDRE++ + AK
Sbjct: 779 -SRDREDQLQTTEESFAK 795
>gi|14165390 protocadherin alpha 6 isoform 2 precursor [Homo
sapiens]
Length = 803
Score = 1253 bits (3241), Expect = 0.0
Identities = 635/802 (79%), Positives = 702/802 (87%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
M+F+ + G QCLLL LLLLAA +VGSGQLHYSV EEAKHGTFVGRIAQDLGLELAELV
Sbjct: 1 MVFTPEDRLGKQCLLLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFR+ASK DLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHV+
Sbjct: 61 PRLFRMASKDREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
VEV+DINDN P+FP+ + + I ESR P S F LEGASDAD+G+NS+LTY L S+EYF L
Sbjct: 121 VEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGL 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
DVK N ++ K +GL+LKK+L+RE+ P H L +TA DGGKPELTGT QL +TVLDVNDNAP
Sbjct: 181 DVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
FE++ Y+VR+ ENA NGT V+ +NA+D DEG N I+YSFN+ ++A ++ F +D G
Sbjct: 241 TFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
+I ++GN+DFE+ Y+I ++ATDKG+PPM+ HCTVL+ I+D NDNVPE+ + SLSLPV
Sbjct: 301 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
ED+ TVIALISV+D DSG NGQV CSLTPHVPFKLVSTFKNYYSLVLDS LDRESVSA
Sbjct: 361 EDAQFGTVIALISVNDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATAS+SVEVAD+NDNAPAF+Q EYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALSSY+SVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL PRVGG GGAVSELVPRS+GAG VVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVSELVPRSLGAGQVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQP AR PFRVGLYTGEISTTR LDE D+PRHRLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQPPASSARFPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVLVSLVESGQAPKASS+AS GA GPEAALVDVNVYLI+AICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRASVGAAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCSAPPTEG C KPTLVCSSAVGSWSYSQQR+QRVCSGEG PK DLMAFSPSL PCP
Sbjct: 721 LRCSAPPTEGACTADKPTLVCSSAVGSWSYSQQRRQRVCSGEGPPKMDLMAFSPSLSPCP 780
Query: 781 ISRDREEKQDVDVDLSAKVSNF 802
I + E QD++ D AKVS F
Sbjct: 781 IMMGKAENQDLNEDHDAKVSEF 802
>gi|9256592 protocadherin alpha 6 isoform 1 precursor [Homo sapiens]
Length = 950
Score = 1247 bits (3227), Expect = 0.0
Identities = 632/798 (79%), Positives = 699/798 (87%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
M+F+ + G QCLLL LLLLAA +VGSGQLHYSV EEAKHGTFVGRIAQDLGLELAELV
Sbjct: 1 MVFTPEDRLGKQCLLLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFR+ASK DLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHV+
Sbjct: 61 PRLFRMASKDREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
VEV+DINDN P+FP+ + + I ESR P S F LEGASDAD+G+NS+LTY L S+EYF L
Sbjct: 121 VEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGL 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
DVK N ++ K +GL+LKK+L+RE+ P H L +TA DGGKPELTGT QL +TVLDVNDNAP
Sbjct: 181 DVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
FE++ Y+VR+ ENA NGT V+ +NA+D DEG N I+YSFN+ ++A ++ F +D G
Sbjct: 241 TFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
+I ++GN+DFE+ Y+I ++ATDKG+PPM+ HCTVL+ I+D NDNVPE+ + SLSLPV
Sbjct: 301 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
ED+ TVIALISV+D DSG NGQV CSLTPHVPFKLVSTFKNYYSLVLDS LDRESVSA
Sbjct: 361 EDAQFGTVIALISVNDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATAS+SVEVAD+NDNAPAF+Q EYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALSSY+SVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL PRVGG GGAVSELVPRS+GAG VVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVSELVPRSLGAGQVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQP AR PFRVGLYTGEISTTR LDE D+PRHRLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQPPASSARFPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVLVSLVESGQAPKASS+AS GA GPEAALVDVNVYLI+AICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRASVGAAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCSAPPTEG C KPTLVCSSAVGSWSYSQQR+QRVCSGEG PK DLMAFSPSL PCP
Sbjct: 721 LRCSAPPTEGACTADKPTLVCSSAVGSWSYSQQRRQRVCSGEGPPKMDLMAFSPSLSPCP 780
Query: 781 ISRDREEKQDVDVDLSAK 798
I + E QD++ D AK
Sbjct: 781 IMMGKAENQDLNEDHDAK 798
>gi|14165397 protocadherin alpha 13 isoform 2 precursor [Homo
sapiens]
Length = 807
Score = 1240 bits (3209), Expect = 0.0
Identities = 632/803 (78%), Positives = 698/803 (86%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
ML SW+ P + LLL LL+LAA E GSGQLHYSV EEAKHGTFVGRIAQDLGLELAELV
Sbjct: 1 MLSSWQGGPRPRQLLLWLLILAAWETGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
Sbjct: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
V+V+DINDN P+FP + K + I+ESR P +RF L+GASDADIG NS LTY LD +YFTL
Sbjct: 121 VKVRDINDNPPIFPESKKRIIIAESRPPETRFPLDGASDADIGVNSALTYRLDPNDYFTL 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
D + + E++ SL LVL+K L+RE+ +H LL+TA DGGKPELTGT QL IT+LDVNDNAP
Sbjct: 181 DAQNSLEQMSSLSLVLRKTLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVNDNAP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
F +++YKV +LENA NGTLV+ +NATD D+G N DI YSF + ++ F ++P NG
Sbjct: 241 EFYQSVYKVTVLENAFNGTLVIKLNATDPDDGTNGDIVYSFRRPVWPAVVYAFTINPNNG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
+I KG +DFEE K YEI VEA DKGN PM+ HCT+L+E++D+NDN PE+ I SLSLP+
Sbjct: 301 EIRTKGKLDFEEKKLYEISVEAVDKGNIPMAGHCTLLVEVLDVNDNAPEVTITSLSLPIR 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
ED+ S +IALISVSDRDSG NGQVTC+LTPHVPFKLVST+KNYYSLVLDS LDRESVSA
Sbjct: 361 EDTQPSAIIALISVSDRDSGSNGQVTCTLTPHVPFKLVSTYKNYYSLVLDSALDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATASVSV VADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSA+
Sbjct: 421 YELVVTARDGGSPSLWATASVSVGVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAQ 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD+
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDS 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL P G GG VSEL+PRSVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLTPGAGSAGGTVSELMPRSVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQ GARIPFRVGLYTGEISTTR LDEVDAP HRLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAPHHRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVL+SLVESGQAP+ASS+ASAGA GPEAALVDVNVYLI+AICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLLSLVESGQAPQASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCSAPPTEG C PGKPTLVCSSA GSWSYSQQR+ RVCSGEG KTDLMAFSPSLPPC
Sbjct: 721 LRCSAPPTEGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEGPHKTDLMAFSPSLPPCL 780
Query: 781 ISRDREEKQDVDVDLSAKVSNFY 803
S + +++ D + +VS ++
Sbjct: 781 GSAEGTGQREEDSECLKEVSLYF 803
>gi|14165422 protocadherin alpha 8 isoform 2 precursor [Homo
sapiens]
Length = 814
Score = 1239 bits (3205), Expect = 0.0
Identities = 632/802 (78%), Positives = 696/802 (86%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
M + WR + G+ LLL LLLLAA +VGSGQLHYSV EEAKHGTFVGRIAQDLGLELAELV
Sbjct: 1 MDYHWRGELGSWRLLLLLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFRVASKRH DLLEV+LQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHV+
Sbjct: 61 PRLFRVASKRHRDLLEVSLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
VEVKD+NDN PVF + + LF+SESR P SRF LEGASDAD+G NS+LTY L S +YF L
Sbjct: 121 VEVKDVNDNPPVFRVKDQKLFVSESRMPDSRFPLEGASDADVGANSVLTYRLSSHDYFML 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
DV ++E K + LVL+K+L+RED P H+L +TA DGGKPELTGT QL +TVLDVNDNAP
Sbjct: 181 DVNSKNDENKLVELVLRKSLDREDAPAHHLFLTATDGGKPELTGTVQLLVTVLDVNDNAP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
FE++ Y+VR+ ENA NGT V+ +NA+D DEG N I+YSFN+ + ++ F +D G
Sbjct: 241 TFEQSEYEVRIFENADNGTTVIKLNASDPDEGANGAISYSFNSLVETMVIDHFSIDRNTG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
+I ++GN+DFE+ Y+I ++ATDKG+PPM+ HCTVL+ I+D NDNVPE+ + SLSLPV
Sbjct: 301 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
ED+ TVIALISV+D DSG NGQVTCSL PHVPFKLVSTFKNYYSLVLDS LDRE VSA
Sbjct: 361 EDAQFGTVIALISVNDLDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRERVSA 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATAS+SVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERRVGER+LSSY+SVH ESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERSLSSYISVHTESGKVYALQPLDHEELELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL PRVGG GGA S+LVPRSVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLEPRVGGTGGAASKLVPRSVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQP RIPFRVGLYTGEISTTR LDE D+PRHRLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQPAASSPRIPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVLVSLVESGQAPKASS+ SAG GPEAALVDVNVYLI+AICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRQSAGVLGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCSA PTEG C GKPTLVCSSAVGSWSYSQQ+ QRVCSGEG PKTDLMAFSP LPP
Sbjct: 721 LRCSALPTEGGCRAGKPTLVCSSAVGSWSYSQQQPQRVCSGEGPPKTDLMAFSPCLPPDL 780
Query: 781 ISRDREEKQDVDVDLSAKVSNF 802
S D E+QD++VD KVS F
Sbjct: 781 GSVDVGEEQDLNVDHGLKVSPF 802
>gi|7662068 protocadherin alpha 9 isoform 2 precursor [Homo sapiens]
Length = 842
Score = 1238 bits (3202), Expect = 0.0
Identities = 635/806 (78%), Positives = 701/806 (86%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
ML+S R DP Q LLLSLL+LA VGSGQLHYSV EEA+HGTFVGRIAQDLGLELAELV
Sbjct: 1 MLYSSRGDPEGQPLLLSLLILAMWVVGSGQLHYSVPEEAEHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLF++ SK GDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHV+
Sbjct: 61 PRLFQLDSKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
VEVKDINDN PVFP KNLFI+ESR SRF LEGASDADIG N+LLTY L EYF L
Sbjct: 121 VEVKDINDNPPVFPATQKNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
DV +++++K LGLVL+K L+RE+TP+ +LL+TA DGGKPELTGT QL ITVLD NDNAP
Sbjct: 181 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
F+RT+Y V+L EN GTLV+ NA+DLDEG+N DI YSF++D+S DI SKFH+DP++G
Sbjct: 241 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
I+V G++DFEES++++I VEA DKG PP++ HCT+L+E+VD+NDN P+L I++LS+PV
Sbjct: 301 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTLLVEVVDVNDNAPQLTIKTLSVPVK 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
ED+ L TVIALISV D D+ NGQVTCSLTPHVPFKLVST+KNYYSLVLD LDRESVSA
Sbjct: 361 EDAQLGTVIALISVIDLDADANGQVTCSLTPHVPFKLVSTYKNYYSLVLDRALDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATA VSVEVADVNDNAPAF+QSEYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERR+GER+LSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL PR+ G GAVSE+V RSVGAG VV KVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLTPRMRGTDGAVSEMVLRSVGAGVVVGKVRAVDAD 600
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQP T A IPFRVGLYTGEISTTRALDE DAPR RLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQPETASASIPFRVGLYTGEISTTRALDETDAPRQRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVLVSLVESGQAPK+SS+AS GATGPE LVDVNVYLI+AICAVSSLLVLTLLLYT
Sbjct: 661 ATATVLVSLVESGQAPKSSSRASVGATGPEVTLVDVNVYLIIAICAVSSLLVLTLLLYTV 720
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCSA PTEG+C PGKPTLVCSSAVGSWSYSQQR+QRVCSGEG KTDLMAFSP L PC
Sbjct: 721 LRCSAMPTEGECAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGLSPCA 780
Query: 781 ISRDREEKQDVDVDLSAKVSNFYLFF 806
S +R + D + KV + F
Sbjct: 781 GSTERTGEPSASSDSTGKVGFSSILF 806
>gi|9256580 protocadherin alpha 13 isoform 1 precursor [Homo
sapiens]
Length = 950
Score = 1237 bits (3201), Expect = 0.0
Identities = 630/792 (79%), Positives = 692/792 (87%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
ML SW+ P + LLL LL+LAA E GSGQLHYSV EEAKHGTFVGRIAQDLGLELAELV
Sbjct: 1 MLSSWQGGPRPRQLLLWLLILAAWETGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
Sbjct: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
V+V+DINDN P+FP + K + I+ESR P +RF L+GASDADIG NS LTY LD +YFTL
Sbjct: 121 VKVRDINDNPPIFPESKKRIIIAESRPPETRFPLDGASDADIGVNSALTYRLDPNDYFTL 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
D + + E++ SL LVL+K L+RE+ +H LL+TA DGGKPELTGT QL IT+LDVNDNAP
Sbjct: 181 DAQNSLEQMSSLSLVLRKTLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVNDNAP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
F +++YKV +LENA NGTLV+ +NATD D+G N DI YSF + ++ F ++P NG
Sbjct: 241 EFYQSVYKVTVLENAFNGTLVIKLNATDPDDGTNGDIVYSFRRPVWPAVVYAFTINPNNG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
+I KG +DFEE K YEI VEA DKGN PM+ HCT+L+E++D+NDN PE+ I SLSLP+
Sbjct: 301 EIRTKGKLDFEEKKLYEISVEAVDKGNIPMAGHCTLLVEVLDVNDNAPEVTITSLSLPIR 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
ED+ S +IALISVSDRDSG NGQVTC+LTPHVPFKLVST+KNYYSLVLDS LDRESVSA
Sbjct: 361 EDTQPSAIIALISVSDRDSGSNGQVTCTLTPHVPFKLVSTYKNYYSLVLDSALDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATASVSV VADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSA+
Sbjct: 421 YELVVTARDGGSPSLWATASVSVGVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAQ 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD+
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDS 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL P G GG VSEL+PRSVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLTPGAGSAGGTVSELMPRSVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQ GARIPFRVGLYTGEISTTR LDEVDAP HRLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAPHHRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVL+SLVESGQAP+ASS+ASAGA GPEAALVDVNVYLI+AICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLLSLVESGQAPQASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCSAPPTEG C PGKPTLVCSSA GSWSYSQQR+ RVCSGEG KTDLMAFSPSLPPC
Sbjct: 721 LRCSAPPTEGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEGPHKTDLMAFSPSLPPCL 780
Query: 781 ISRDREEKQDVD 792
S + +++ D
Sbjct: 781 GSAEGTGQREED 792
>gi|14165425 protocadherin alpha 9 isoform 1 precursor [Homo
sapiens]
Length = 950
Score = 1236 bits (3197), Expect = 0.0
Identities = 633/798 (79%), Positives = 698/798 (87%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
ML+S R DP Q LLLSLL+LA VGSGQLHYSV EEA+HGTFVGRIAQDLGLELAELV
Sbjct: 1 MLYSSRGDPEGQPLLLSLLILAMWVVGSGQLHYSVPEEAEHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLF++ SK GDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHV+
Sbjct: 61 PRLFQLDSKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
VEVKDINDN PVFP KNLFI+ESR SRF LEGASDADIG N+LLTY L EYF L
Sbjct: 121 VEVKDINDNPPVFPATQKNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
DV +++++K LGLVL+K L+RE+TP+ +LL+TA DGGKPELTGT QL ITVLD NDNAP
Sbjct: 181 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
F+RT+Y V+L EN GTLV+ NA+DLDEG+N DI YSF++D+S DI SKFH+DP++G
Sbjct: 241 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
I+V G++DFEES++++I VEA DKG PP++ HCT+L+E+VD+NDN P+L I++LS+PV
Sbjct: 301 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTLLVEVVDVNDNAPQLTIKTLSVPVK 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
ED+ L TVIALISV D D+ NGQVTCSLTPHVPFKLVST+KNYYSLVLD LDRESVSA
Sbjct: 361 EDAQLGTVIALISVIDLDADANGQVTCSLTPHVPFKLVSTYKNYYSLVLDRALDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATA VSVEVADVNDNAPAF+QSEYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERR+GER+LSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL PR+ G GAVSE+V RSVGAG VV KVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLTPRMRGTDGAVSEMVLRSVGAGVVVGKVRAVDAD 600
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQP T A IPFRVGLYTGEISTTRALDE DAPR RLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQPETASASIPFRVGLYTGEISTTRALDETDAPRQRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVLVSLVESGQAPK+SS+AS GATGPE LVDVNVYLI+AICAVSSLLVLTLLLYT
Sbjct: 661 ATATVLVSLVESGQAPKSSSRASVGATGPEVTLVDVNVYLIIAICAVSSLLVLTLLLYTV 720
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCSA PTEG+C PGKPTLVCSSAVGSWSYSQQR+QRVCSGEG KTDLMAFSP L PC
Sbjct: 721 LRCSAMPTEGECAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGLSPCA 780
Query: 781 ISRDREEKQDVDVDLSAK 798
S +R + D + K
Sbjct: 781 GSTERTGEPSASSDSTGK 798
>gi|9256596 protocadherin alpha 8 isoform 1 precursor [Homo sapiens]
Length = 950
Score = 1234 bits (3193), Expect = 0.0
Identities = 629/798 (78%), Positives = 693/798 (86%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
M + WR + G+ LLL LLLLAA +VGSGQLHYSV EEAKHGTFVGRIAQDLGLELAELV
Sbjct: 1 MDYHWRGELGSWRLLLLLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFRVASKRH DLLEV+LQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHV+
Sbjct: 61 PRLFRVASKRHRDLLEVSLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
VEVKD+NDN PVF + + LF+SESR P SRF LEGASDAD+G NS+LTY L S +YF L
Sbjct: 121 VEVKDVNDNPPVFRVKDQKLFVSESRMPDSRFPLEGASDADVGANSVLTYRLSSHDYFML 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
DV ++E K + LVL+K+L+RED P H+L +TA DGGKPELTGT QL +TVLDVNDNAP
Sbjct: 181 DVNSKNDENKLVELVLRKSLDREDAPAHHLFLTATDGGKPELTGTVQLLVTVLDVNDNAP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
FE++ Y+VR+ ENA NGT V+ +NA+D DEG N I+YSFN+ + ++ F +D G
Sbjct: 241 TFEQSEYEVRIFENADNGTTVIKLNASDPDEGANGAISYSFNSLVETMVIDHFSIDRNTG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
+I ++GN+DFE+ Y+I ++ATDKG+PPM+ HCTVL+ I+D NDNVPE+ + SLSLPV
Sbjct: 301 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
ED+ TVIALISV+D DSG NGQVTCSL PHVPFKLVSTFKNYYSLVLDS LDRE VSA
Sbjct: 361 EDAQFGTVIALISVNDLDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRERVSA 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATAS+SVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERRVGER+LSSY+SVH ESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERSLSSYISVHTESGKVYALQPLDHEELELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL PRVGG GGA S+LVPRSVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLEPRVGGTGGAASKLVPRSVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQP RIPFRVGLYTGEISTTR LDE D+PRHRLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQPAASSPRIPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVLVSLVESGQAPKASS+ SAG GPEAALVDVNVYLI+AICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRQSAGVLGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCSA PTEG C GKPTLVCSSAVGSWSYSQQ+ QRVCSGEG PKTDLMAFSP LPP
Sbjct: 721 LRCSALPTEGGCRAGKPTLVCSSAVGSWSYSQQQPQRVCSGEGPPKTDLMAFSPCLPPDL 780
Query: 781 ISRDREEKQDVDVDLSAK 798
S D E+QD++VD K
Sbjct: 781 GSVDVGEEQDLNVDHGLK 798
>gi|9256594 protocadherin alpha 7 isoform 1 precursor [Homo sapiens]
Length = 937
Score = 1233 bits (3190), Expect = 0.0
Identities = 633/792 (79%), Positives = 691/792 (87%)
Query: 8 DPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVA 67
DPG + LLL +++LAA E G GQLHYSV EEAKHG FVGRIAQDLGLELAELVPRLFR
Sbjct: 8 DPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAV 67
Query: 68 SKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDIN 127
K GDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIV+RPLQVFHV+VEVKDIN
Sbjct: 68 CKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDIN 127
Query: 128 DNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTLDVKRNDE 187
DN PVFP +NLFI+ESR SRF LEGASDADIG N+LLTY L EYF LDV +++
Sbjct: 128 DNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQ 187
Query: 188 EIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAPAFERTIY 247
++K LGLVL+K L+RE+TP+ +LL+TA DGGKPELTGT QL ITVLD NDNAP F+RT+Y
Sbjct: 188 QVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLY 247
Query: 248 KVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNGQISVKGN 307
V+L EN GTLV+ NA+DLDEG+N DI YSF++D+S DI SKFH+DP++G I+V G+
Sbjct: 248 TVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGH 307
Query: 308 IDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVLEDSPLST 367
+DFEES++++I VEA DKG PP++ HCTVL+E+VD+NDN P+L + SLSLP+ ED+ T
Sbjct: 308 MDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGT 367
Query: 368 VIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSAYELVVTA 427
VI LISV DRD GVNGQVTCSLTP VPFKLVSTFKNYYSLVLDS LDRESVSAYELVVTA
Sbjct: 368 VITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTA 427
Query: 428 RDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSARDADAQEN 487
RDGGSPSLWATASVSVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSA DADAQ+N
Sbjct: 428 RDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKN 487
Query: 488 ALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS 547
ALVSYSLVE RVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS
Sbjct: 488 ALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS 547
Query: 548 NVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAWL 607
NVTLQVFVLDENDNAPALL PRVGG GGAV ELVPRSVGAGHVVAKVRAVDADSGYNAWL
Sbjct: 548 NVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWL 607
Query: 608 SYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLTATATVLV 667
SYELQP GA IPFRVGLYTGEISTTRALDE DAPRHRLLVLVKDHGEPSLTATATVLV
Sbjct: 608 SYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLV 667
Query: 668 SLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTALRCSAPP 727
SLVESGQAPKASS+AS G GPE LVDVNVYLI+AICAVSSLLVLTLLLYTALRCSAP
Sbjct: 668 SLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPS 727
Query: 728 TEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCPISRDREE 787
+EG C KPTLVCSSAVGSWS+SQQR+QRVCSGEG PKTDLMAFSPSLP P S D
Sbjct: 728 SEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTDNPR 787
Query: 788 KQDVDVDLSAKV 799
+ + D SA +
Sbjct: 788 QPNPDWRYSASL 799
>gi|14165419 protocadherin alpha 7 isoform 2 precursor [Homo
sapiens]
Length = 789
Score = 1230 bits (3183), Expect = 0.0
Identities = 630/777 (81%), Positives = 685/777 (88%)
Query: 8 DPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVA 67
DPG + LLL +++LAA E G GQLHYSV EEAKHG FVGRIAQDLGLELAELVPRLFR
Sbjct: 8 DPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAV 67
Query: 68 SKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDIN 127
K GDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIV+RPLQVFHV+VEVKDIN
Sbjct: 68 CKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDIN 127
Query: 128 DNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTLDVKRNDE 187
DN PVFP +NLFI+ESR SRF LEGASDADIG N+LLTY L EYF LDV +++
Sbjct: 128 DNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQ 187
Query: 188 EIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAPAFERTIY 247
++K LGLVL+K L+RE+TP+ +LL+TA DGGKPELTGT QL ITVLD NDNAP F+RT+Y
Sbjct: 188 QVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLY 247
Query: 248 KVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNGQISVKGN 307
V+L EN GTLV+ NA+DLDEG+N DI YSF++D+S DI SKFH+DP++G I+V G+
Sbjct: 248 TVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGH 307
Query: 308 IDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVLEDSPLST 367
+DFEES++++I VEA DKG PP++ HCTVL+E+VD+NDN P+L + SLSLP+ ED+ T
Sbjct: 308 MDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGT 367
Query: 368 VIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSAYELVVTA 427
VI LISV DRD GVNGQVTCSLTP VPFKLVSTFKNYYSLVLDS LDRESVSAYELVVTA
Sbjct: 368 VITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTA 427
Query: 428 RDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSARDADAQEN 487
RDGGSPSLWATASVSVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSA DADAQ+N
Sbjct: 428 RDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKN 487
Query: 488 ALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS 547
ALVSYSLVE RVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS
Sbjct: 488 ALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS 547
Query: 548 NVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAWL 607
NVTLQVFVLDENDNAPALL PRVGG GGAV ELVPRSVGAGHVVAKVRAVDADSGYNAWL
Sbjct: 548 NVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWL 607
Query: 608 SYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLTATATVLV 667
SYELQP GA IPFRVGLYTGEISTTRALDE DAPRHRLLVLVKDHGEPSLTATATVLV
Sbjct: 608 SYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLV 667
Query: 668 SLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTALRCSAPP 727
SLVESGQAPKASS+AS G GPE LVDVNVYLI+AICAVSSLLVLTLLLYTALRCSAP
Sbjct: 668 SLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPS 727
Query: 728 TEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCPISRD 784
+EG C KPTLVCSSAVGSWS+SQQR+QRVCSGEG PKTDLMAFSPSLP P S D
Sbjct: 728 SEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTD 784
>gi|14165405 protocadherin alpha 2 isoform 2 precursor [Homo
sapiens]
Length = 824
Score = 1228 bits (3178), Expect = 0.0
Identities = 638/800 (79%), Positives = 691/800 (86%), Gaps = 2/800 (0%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
M S R GA LLSLLLLAA EVGSGQL YSV EEAKHGTFVGRIAQDLGLEL ELV
Sbjct: 1 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIH+EVIVDRPLQVFHVE
Sbjct: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
VEVKDINDN P+FPM VK + ESR SRF LEGASDADIG N+LL+Y L S+E+F L
Sbjct: 121 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
D++ NDE +SL LVL K+L+RE+T + LL+ A DGGKPELTGT Q+ I VLDVNDN P
Sbjct: 181 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
F +++YKV+LLEN NGTLVV +NA+D DEG N +I YS +D+S+ I +KF +DP++G
Sbjct: 241 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
+I KG +D+EE+KSYEIQV ATDKG P MS HC + L++VDINDN PE+ I SLSLP+
Sbjct: 301 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
E++ L TVIALI+VSDRDSG NG VTCSLTPHVPFKLVSTFKNYYSLVLDS LDRESVSA
Sbjct: 361 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWAT SVS+EVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSA
Sbjct: 421 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL PR G GAVSELVP SVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQ GTG ARIPFRVGLYTGEISTTRALDE D+PRHRLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVLVSLVESGQAPKASS+A GA G EA LVDVNVYLI+AICAVSSLLVLT+LLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA 720
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCS PPTEG PGKPTLVCSSAVGSWSYSQQR+QRVCSGE PKTDLMAFSPSL P
Sbjct: 721 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP 780
Query: 781 ISRDREEKQDVDVDLSAKVS 800
S EEKQ + + KVS
Sbjct: 781 DS--AEEKQLSESEYVGKVS 798
>gi|9256584 protocadherin alpha 2 isoform 1 precursor [Homo sapiens]
Length = 948
Score = 1226 bits (3172), Expect = 0.0
Identities = 635/789 (80%), Positives = 686/789 (86%), Gaps = 2/789 (0%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
M S R GA LLSLLLLAA EVGSGQL YSV EEAKHGTFVGRIAQDLGLEL ELV
Sbjct: 1 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIH+EVIVDRPLQVFHVE
Sbjct: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
VEVKDINDN P+FPM VK + ESR SRF LEGASDADIG N+LL+Y L S+E+F L
Sbjct: 121 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
D++ NDE +SL LVL K+L+RE+T + LL+ A DGGKPELTGT Q+ I VLDVNDN P
Sbjct: 181 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
F +++YKV+LLEN NGTLVV +NA+D DEG N +I YS +D+S+ I +KF +DP++G
Sbjct: 241 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
+I KG +D+EE+KSYEIQV ATDKG P MS HC + L++VDINDN PE+ I SLSLP+
Sbjct: 301 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
E++ L TVIALI+VSDRDSG NG VTCSLTPHVPFKLVSTFKNYYSLVLDS LDRESVSA
Sbjct: 361 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWAT SVS+EVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSA
Sbjct: 421 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL PR G GAVSELVP SVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQ GTG ARIPFRVGLYTGEISTTRALDE D+PRHRLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVLVSLVESGQAPKASS+A GA G EA LVDVNVYLI+AICAVSSLLVLT+LLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA 720
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCS PPTEG PGKPTLVCSSAVGSWSYSQQR+QRVCSGE PKTDLMAFSPSL P
Sbjct: 721 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP 780
Query: 781 ISRDREEKQ 789
S EEKQ
Sbjct: 781 DS--AEEKQ 787
>gi|14165400 protocadherin alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 807
Score = 1224 bits (3168), Expect = 0.0
Identities = 628/806 (77%), Positives = 700/806 (86%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
M+FS R GA+ LLL LLLLAA EVGSGQLHYS+ EEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFRVASK H DLLEVNLQNGILFVNSRIDREELC SAECSIHLE+I DRPLQVFHVE
Sbjct: 61 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
V+VKDINDN PVF + +FI ESR SRF +EGA+DADIG N+LLTY+L ++YF+L
Sbjct: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
DV+ +DE KSL L L+K L+RE+TP+ +LL+TA DGGKPEL GT +L ITVLDVNDNAP
Sbjct: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
F++ +Y+V LLE NGTLV T+NA+D DEGVN ++ +SF++ +S DI KF +D +G
Sbjct: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
+I + +D+EE+KSYEIQV+A DKG+PPMS+HC VL++++D+NDN PEL + SL LP+
Sbjct: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
ED+PLSTVIALI+VSDRDSG NGQVTCSL PHVPFKLVSTFKNYYSLVLDS LDRES+S
Sbjct: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATA VSVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALS+YVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL PRVGG GAVSELVPR VGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQP GGARIPFRVGLYTGEISTTR LDE D R+RLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVLVSLVESGQAPKASS+AS G GPEAALVDVNVYLI+AICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCS PPTEG PGKPTLVCSSA+GSWS SQQR+QRVCS EG PKTDLMAFSP L P
Sbjct: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
Query: 781 ISRDREEKQDVDVDLSAKVSNFYLFF 806
+ +R E+ + ++DLS VS + F+
Sbjct: 781 NTSERNEQPEANLDLSGNVSPTFEFW 806
>gi|9256582 protocadherin alpha 1 isoform 1 precursor [Homo sapiens]
Length = 950
Score = 1220 bits (3157), Expect = 0.0
Identities = 625/796 (78%), Positives = 695/796 (87%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
M+FS R GA+ LLL LLLLAA EVGSGQLHYS+ EEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFRVASK H DLLEVNLQNGILFVNSRIDREELC SAECSIHLE+I DRPLQVFHVE
Sbjct: 61 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
V+VKDINDN PVF + +FI ESR SRF +EGA+DADIG N+LLTY+L ++YF+L
Sbjct: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
DV+ +DE KSL L L+K L+RE+TP+ +LL+TA DGGKPEL GT +L ITVLDVNDNAP
Sbjct: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
F++ +Y+V LLE NGTLV T+NA+D DEGVN ++ +SF++ +S DI KF +D +G
Sbjct: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
+I + +D+EE+KSYEIQV+A DKG+PPMS+HC VL++++D+NDN PEL + SL LP+
Sbjct: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
ED+PLSTVIALI+VSDRDSG NGQVTCSL PHVPFKLVSTFKNYYSLVLDS LDRES+S
Sbjct: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATA VSVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALS+YVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL PRVGG GAVSELVPR VGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQP GGARIPFRVGLYTGEISTTR LDE D R+RLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVLVSLVESGQAPKASS+AS G GPEAALVDVNVYLI+AICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCS PPTEG PGKPTLVCSSA+GSWS SQQR+QRVCS EG PKTDLMAFSP L P
Sbjct: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
Query: 781 ISRDREEKQDVDVDLS 796
+ +R E+ + ++DLS
Sbjct: 781 NTSERNEQPEANLDLS 796
>gi|9256590 protocadherin alpha 5 isoform 1 precursor [Homo sapiens]
Length = 936
Score = 1214 bits (3141), Expect = 0.0
Identities = 626/799 (78%), Positives = 685/799 (85%), Gaps = 1/799 (0%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
M++S R G++ LLL LLLA + GSGQLHYS+ EEAKHGTFVGRIAQDLGLELAELV
Sbjct: 1 MVYSRRGSLGSRLLLL-WLLLAYWKAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELAELV 59
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFRVASK GDLLEVNLQNGILFVNSRIDREELC R AECSIHLEVIVDRPLQVFHVE
Sbjct: 60 PRLFRVASKGRGDLLEVNLQNGILFVNSRIDREELCRRRAECSIHLEVIVDRPLQVFHVE 119
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
V VKDINDN P F + LFI ESR P SRF LEGASD DIG N+ L Y L+ EYF L
Sbjct: 120 VAVKDINDNPPRFSRQEQRLFILESRMPDSRFPLEGASDLDIGANAQLRYRLNPNEYFDL 179
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
DVK N+EE L LVL+K+L+RE+T +H LL+ A DGGKPELTGT QL I VLD NDNAP
Sbjct: 180 DVKTNEEETNFLELVLRKSLDREETQEHRLLVIATDGGKPELTGTVQLLINVLDANDNAP 239
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
F+++IY VRLLENAP+GTLV+ +NA+D DEG+NK+I Y F+ + D+ SKF ++ G
Sbjct: 240 EFDKSIYNVRLLENAPSGTLVIKLNASDADEGINKEIVYFFSNLVLDDVKSKFIINSNTG 299
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
+I V G +D+E+ SYEI ++A DK P+S HC V+++++D+NDN PE+ I +L LPV
Sbjct: 300 EIKVNGELDYEDYNSYEINIDAMDKSTFPLSGHCKVVVKLLDVNDNTPEMAITTLFLPVK 359
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
ED+PLSTVIALISVSDRDSG NGQVTCSL PHVPFKLVSTFKNYYSLVLDS LDRESVS
Sbjct: 360 EDAPLSTVIALISVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESVSV 419
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATASVSVEVADVNDNAPAF+Q +YTVFVKENNPPGCHIFTVSAR
Sbjct: 420 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPQYTVFVKENNPPGCHIFTVSAR 479
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERRVGER LSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDA
Sbjct: 480 DADAQENALVSYSLVERRVGERPLSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 539
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL+PRVGG GGAVSELVPRSVGAGHVVAKVRAVD D
Sbjct: 540 GVPPLGSNVTLQVFVLDENDNAPALLVPRVGGTGGAVSELVPRSVGAGHVVAKVRAVDPD 599
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQP G ARIPFRVGLYTGEISTTR+LDE +APRHRLLVLVKDHGEP LT
Sbjct: 600 SGYNAWLSYELQPAPGSARIPFRVGLYTGEISTTRSLDETEAPRHRLLVLVKDHGEPPLT 659
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVLVSLVESGQAPKASS+ASAGA GPEAALVDVNVYLI+AICAVSSLLVLTLLLYTA
Sbjct: 660 ATATVLVSLVESGQAPKASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 719
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCSA PTE C GKPTL+CSSAVGSWSYSQQR+QRVCSGE PKTDLMAFSPSLP P
Sbjct: 720 LRCSAQPTEAVCTRGKPTLLCSSAVGSWSYSQQRRQRVCSGEAPPKTDLMAFSPSLPQGP 779
Query: 781 ISRDREEKQDVDVDLSAKV 799
S D + + D SA +
Sbjct: 780 TSTDNPRQPNPDWRYSASL 798
>gi|14165416 protocadherin alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 816
Score = 1211 bits (3134), Expect = 0.0
Identities = 623/784 (79%), Positives = 679/784 (86%), Gaps = 1/784 (0%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
M++S R G++ LLL LLLA + GSGQLHYS+ EEAKHGTFVGRIAQDLGLELAELV
Sbjct: 1 MVYSRRGSLGSRLLLL-WLLLAYWKAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELAELV 59
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFRVASK GDLLEVNLQNGILFVNSRIDREELC R AECSIHLEVIVDRPLQVFHVE
Sbjct: 60 PRLFRVASKGRGDLLEVNLQNGILFVNSRIDREELCRRRAECSIHLEVIVDRPLQVFHVE 119
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
V VKDINDN P F + LFI ESR P SRF LEGASD DIG N+ L Y L+ EYF L
Sbjct: 120 VAVKDINDNPPRFSRQEQRLFILESRMPDSRFPLEGASDLDIGANAQLRYRLNPNEYFDL 179
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
DVK N+EE L LVL+K+L+RE+T +H LL+ A DGGKPELTGT QL I VLD NDNAP
Sbjct: 180 DVKTNEEETNFLELVLRKSLDREETQEHRLLVIATDGGKPELTGTVQLLINVLDANDNAP 239
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
F+++IY VRLLENAP+GTLV+ +NA+D DEG+NK+I Y F+ + D+ SKF ++ G
Sbjct: 240 EFDKSIYNVRLLENAPSGTLVIKLNASDADEGINKEIVYFFSNLVLDDVKSKFIINSNTG 299
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
+I V G +D+E+ SYEI ++A DK P+S HC V+++++D+NDN PE+ I +L LPV
Sbjct: 300 EIKVNGELDYEDYNSYEINIDAMDKSTFPLSGHCKVVVKLLDVNDNTPEMAITTLFLPVK 359
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
ED+PLSTVIALISVSDRDSG NGQVTCSL PHVPFKLVSTFKNYYSLVLDS LDRESVS
Sbjct: 360 EDAPLSTVIALISVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESVSV 419
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATASVSVEVADVNDNAPAF+Q +YTVFVKENNPPGCHIFTVSAR
Sbjct: 420 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPQYTVFVKENNPPGCHIFTVSAR 479
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
DADAQENALVSYSLVERRVGER LSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDA
Sbjct: 480 DADAQENALVSYSLVERRVGERPLSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 539
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL+PRVGG GGAVSELVPRSVGAGHVVAKVRAVD D
Sbjct: 540 GVPPLGSNVTLQVFVLDENDNAPALLVPRVGGTGGAVSELVPRSVGAGHVVAKVRAVDPD 599
Query: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
SGYNAWLSYELQP G ARIPFRVGLYTGEISTTR+LDE +APRHRLLVLVKDHGEP LT
Sbjct: 600 SGYNAWLSYELQPAPGSARIPFRVGLYTGEISTTRSLDETEAPRHRLLVLVKDHGEPPLT 659
Query: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
ATATVLVSLVESGQAPKASS+ASAGA GPEAALVDVNVYLI+AICAVSSLLVLTLLLYTA
Sbjct: 660 ATATVLVSLVESGQAPKASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 719
Query: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
LRCSA PTE C GKPTL+CSSAVGSWSYSQQR+QRVCSGE PKTDLMAFSPSLP P
Sbjct: 720 LRCSAQPTEAVCTRGKPTLLCSSAVGSWSYSQQRRQRVCSGEAPPKTDLMAFSPSLPQGP 779
Query: 781 ISRD 784
S D
Sbjct: 780 TSTD 783
>gi|14165381 protocadherin alpha 10 isoform 2 precursor [Homo
sapiens]
Length = 844
Score = 1194 bits (3088), Expect = 0.0
Identities = 621/803 (77%), Positives = 676/803 (84%), Gaps = 3/803 (0%)
Query: 10 GAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVASK 69
G QCLLLSLLLLAA EVGSGQLHYSV EEA+HGTFVGRIAQDLGLELAELV RLFRVASK
Sbjct: 9 GVQCLLLSLLLLAAWEVGSGQLHYSVYEEARHGTFVGRIAQDLGLELAELVQRLFRVASK 68
Query: 70 RHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDINDN 129
RHGDLLEVNLQNGILFVNSRIDREELCGRS ECSIHLEVIVDRPLQVFHV+VEVKDINDN
Sbjct: 69 RHGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVDVEVKDINDN 128
Query: 130 APVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTLDVKRNDEEI 189
P F + + L I ESR SRF LEGASDAD+G N+LLTY L EYF LD+ ++
Sbjct: 129 PPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVLDIINKKDKD 188
Query: 190 KSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAPAFERTIYKV 249
K LVL+K L+RE+ P+ LL+TA DGGKPE TG+ L I VLD NDNAP F+R +Y+V
Sbjct: 189 KFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAPIFDRPVYEV 248
Query: 250 RLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNGQISVKGNID 309
++ EN N TLV+ +NA+D DEG+NK++ YSF++ + I KF ++ G+I V ID
Sbjct: 249 KMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTGEIKVNDAID 308
Query: 310 FEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVLEDSPLSTVI 369
FE+S +YEI V+ TDKGNPPM HCTVL+E++D NDN PE+++ SLSLPV ED+ + TVI
Sbjct: 309 FEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVKEDAQVGTVI 368
Query: 370 ALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSAYELVVTARD 429
ALISVSD DSG NGQVTCSLTPHVPFKLVST+KNYYSLVLDS LDRE VSAYELVVTARD
Sbjct: 369 ALISVSDHDSGANGQVTCSLTPHVPFKLVSTYKNYYSLVLDSALDRERVSAYELVVTARD 428
Query: 430 GGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSARDADAQENAL 489
GGSP LWATASVSVEVADVNDNAPAF+QSEYTVFVKENNPPGCHIFTVSA DADAQENAL
Sbjct: 429 GGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAWDADAQENAL 488
Query: 490 VSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
VSYSLVERR+GER+LSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD GVPPLGSN+
Sbjct: 489 VSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDGGVPPLGSNL 548
Query: 550 TLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609
TLQVFVLDENDNAPALL G GGAVSELV RSV AGHVVAKVRAVDADSGYNAWLSY
Sbjct: 549 TLQVFVLDENDNAPALLASPAGSAGGAVSELVLRSVVAGHVVAKVRAVDADSGYNAWLSY 608
Query: 610 ELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLTATATVLVSL 669
ELQ GARIPFRVGLYTGEISTTRALDE D+PR RLLVLVKDHGEPSLTATATVLVSL
Sbjct: 609 ELQSAAVGARIPFRVGLYTGEISTTRALDETDSPRQRLLVLVKDHGEPSLTATATVLVSL 668
Query: 670 VESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTALRCSAPPTE 729
VE QAPKASS+AS G PE ALVDVNVYLI+AICAVSSLLVLTLLLYTALRCSA PTE
Sbjct: 669 VEGSQAPKASSRASVG-VAPEVALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAAPTE 727
Query: 730 GDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCPISRDREEKQ 789
G CGP KPTLVCSSAVGSWSYSQQR+QRVCSGEGLPK DLMAFSPSLPPCP+ E Q
Sbjct: 728 GACGPVKPTLVCSSAVGSWSYSQQRRQRVCSGEGLPKADLMAFSPSLPPCPMVDVDGEDQ 787
Query: 790 DVDVDLSAKVSNFYLFFPKCLCF 812
+ D S KV + F LCF
Sbjct: 788 SIGGDHSRKVGYYVFIF--LLCF 808
>gi|9256574 protocadherin alpha 10 isoform 1 precursor [Homo
sapiens]
Length = 948
Score = 1188 bits (3073), Expect = 0.0
Identities = 616/789 (78%), Positives = 670/789 (84%), Gaps = 1/789 (0%)
Query: 10 GAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVASK 69
G QCLLLSLLLLAA EVGSGQLHYSV EEA+HGTFVGRIAQDLGLELAELV RLFRVASK
Sbjct: 9 GVQCLLLSLLLLAAWEVGSGQLHYSVYEEARHGTFVGRIAQDLGLELAELVQRLFRVASK 68
Query: 70 RHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDINDN 129
RHGDLLEVNLQNGILFVNSRIDREELCGRS ECSIHLEVIVDRPLQVFHV+VEVKDINDN
Sbjct: 69 RHGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVDVEVKDINDN 128
Query: 130 APVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTLDVKRNDEEI 189
P F + + L I ESR SRF LEGASDAD+G N+LLTY L EYF LD+ ++
Sbjct: 129 PPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVLDIINKKDKD 188
Query: 190 KSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAPAFERTIYKV 249
K LVL+K L+RE+ P+ LL+TA DGGKPE TG+ L I VLD NDNAP F+R +Y+V
Sbjct: 189 KFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAPIFDRPVYEV 248
Query: 250 RLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNGQISVKGNID 309
++ EN N TLV+ +NA+D DEG+NK++ YSF++ + I KF ++ G+I V ID
Sbjct: 249 KMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTGEIKVNDAID 308
Query: 310 FEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVLEDSPLSTVI 369
FE+S +YEI V+ TDKGNPPM HCTVL+E++D NDN PE+++ SLSLPV ED+ + TVI
Sbjct: 309 FEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVKEDAQVGTVI 368
Query: 370 ALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSAYELVVTARD 429
ALISVSD DSG NGQVTCSLTPHVPFKLVST+KNYYSLVLDS LDRE VSAYELVVTARD
Sbjct: 369 ALISVSDHDSGANGQVTCSLTPHVPFKLVSTYKNYYSLVLDSALDRERVSAYELVVTARD 428
Query: 430 GGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSARDADAQENAL 489
GGSP LWATASVSVEVADVNDNAPAF+QSEYTVFVKENNPPGCHIFTVSA DADAQENAL
Sbjct: 429 GGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAWDADAQENAL 488
Query: 490 VSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
VSYSLVERR+GER+LSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD GVPPLGSN+
Sbjct: 489 VSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDGGVPPLGSNL 548
Query: 550 TLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609
TLQVFVLDENDNAPALL G GGAVSELV RSV AGHVVAKVRAVDADSGYNAWLSY
Sbjct: 549 TLQVFVLDENDNAPALLASPAGSAGGAVSELVLRSVVAGHVVAKVRAVDADSGYNAWLSY 608
Query: 610 ELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLTATATVLVSL 669
ELQ GARIPFRVGLYTGEISTTRALDE D+PR RLLVLVKDHGEPSLTATATVLVSL
Sbjct: 609 ELQSAAVGARIPFRVGLYTGEISTTRALDETDSPRQRLLVLVKDHGEPSLTATATVLVSL 668
Query: 670 VESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTALRCSAPPTE 729
VE QAPKASS+AS G PE ALVDVNVYLI+AICAVSSLLVLTLLLYTALRCSA PTE
Sbjct: 669 VEGSQAPKASSRASVG-VAPEVALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAAPTE 727
Query: 730 GDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCPISRDREEKQ 789
G CGP KPTLVCSSAVGSWSYSQQR+QRVCSGEGLPK DLMAFSPSLPPCP+ E Q
Sbjct: 728 GACGPVKPTLVCSSAVGSWSYSQQRRQRVCSGEGLPKADLMAFSPSLPPCPMVDVDGEDQ 787
Query: 790 DVDVDLSAK 798
+ D S K
Sbjct: 788 SIGGDHSRK 796
>gi|14165387 protocadherin alpha 11 isoform 2 precursor [Homo
sapiens]
Length = 810
Score = 1184 bits (3063), Expect = 0.0
Identities = 617/795 (77%), Positives = 676/795 (85%), Gaps = 1/795 (0%)
Query: 6 REDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFR 65
R G L L LLLL EVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV RLFR
Sbjct: 6 RRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVQRLFR 65
Query: 66 VASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKD 125
VASK HGDLLEVNLQNGILFVNSRIDREELCG+SAECSIHLEVIVDRPLQVFHV VEVKD
Sbjct: 66 VASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVNVEVKD 125
Query: 126 INDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTLDVKRN 185
INDN PVF + + L I+ES+Q SRF LEGASDADI N+LLTY L EYF+LD N
Sbjct: 126 INDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSLDSPTN 185
Query: 186 DEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAPAFERT 245
++IK L L+LKK+L+RE TP+ LL+TA DGGKPELTGT +L + VLDVNDN P F+++
Sbjct: 186 GKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDPEFDKS 245
Query: 246 IYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNGQISVK 305
YKV L+ENA TLV+ +NATD DEGVN ++ YS + + + F LD NG++ V
Sbjct: 246 EYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNGEVRVN 304
Query: 306 GNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVLEDSPL 365
G +D+EE+K Y+I+V+ATDKG PPM+ HCTV +EI+D NDN PE+ + SLSLPV ED+
Sbjct: 305 GTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVREDAQP 364
Query: 366 STVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSAYELVV 425
STVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDS LDRE+V AYELVV
Sbjct: 365 STVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAYELVV 424
Query: 426 TARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSARDADAQ 485
TARDGGSPSLWATA VSVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSARDADAQ
Sbjct: 425 TARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQ 484
Query: 486 ENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPL 545
ENALVSYSLVERR+G+RALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPL
Sbjct: 485 ENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPL 544
Query: 546 GSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDADSGYNA 605
SNVTLQVFVLDENDNAPALL + G GGAV++LVPRSVGAGHVVAKVRAVDADSGYNA
Sbjct: 545 SSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADSGYNA 604
Query: 606 WLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLTATATV 665
WLSYELQP GG+RIPFRVGLYTGEISTTRALDE D+PRHRLLVLVKDHGEP+LTATATV
Sbjct: 605 WLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATV 664
Query: 666 LVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTALRCSA 725
LVSLVESGQAPKASS+ AGA PEAALVDVNVYLI+AIC VSSLLVLTLLLYTAL SA
Sbjct: 665 LVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTALWWSA 724
Query: 726 PPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCPISRDR 785
PTEG C PGKPTLVCS AVGSWSYSQQR+QRVCS EG PKTDLMAFSPSLP +
Sbjct: 725 TPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLNKEEE 784
Query: 786 EEKQDVDVDLSAKVS 800
E+Q+ + +VS
Sbjct: 785 GERQEPGSNHPGQVS 799
>gi|9256576 protocadherin alpha 11 isoform 1 precursor [Homo
sapiens]
Length = 949
Score = 1184 bits (3062), Expect = 0.0
Identities = 615/785 (78%), Positives = 672/785 (85%), Gaps = 1/785 (0%)
Query: 6 REDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFR 65
R G L L LLLL EVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV RLFR
Sbjct: 6 RRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVQRLFR 65
Query: 66 VASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKD 125
VASK HGDLLEVNLQNGILFVNSRIDREELCG+SAECSIHLEVIVDRPLQVFHV VEVKD
Sbjct: 66 VASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVNVEVKD 125
Query: 126 INDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTLDVKRN 185
INDN PVF + + L I+ES+Q SRF LEGASDADI N+LLTY L EYF+LD N
Sbjct: 126 INDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSLDSPTN 185
Query: 186 DEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAPAFERT 245
++IK L L+LKK+L+RE TP+ LL+TA DGGKPELTGT +L + VLDVNDN P F+++
Sbjct: 186 GKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDPEFDKS 245
Query: 246 IYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNGQISVK 305
YKV L+ENA TLV+ +NATD DEGVN ++ YS + + + F LD NG++ V
Sbjct: 246 EYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNGEVRVN 304
Query: 306 GNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVLEDSPL 365
G +D+EE+K Y+I+V+ATDKG PPM+ HCTV +EI+D NDN PE+ + SLSLPV ED+
Sbjct: 305 GTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVREDAQP 364
Query: 366 STVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSAYELVV 425
STVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDS LDRE+V AYELVV
Sbjct: 365 STVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAYELVV 424
Query: 426 TARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSARDADAQ 485
TARDGGSPSLWATA VSVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSARDADAQ
Sbjct: 425 TARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQ 484
Query: 486 ENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPL 545
ENALVSYSLVERR+G+RALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPL
Sbjct: 485 ENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPL 544
Query: 546 GSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDADSGYNA 605
SNVTLQVFVLDENDNAPALL + G GGAV++LVPRSVGAGHVVAKVRAVDADSGYNA
Sbjct: 545 SSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADSGYNA 604
Query: 606 WLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLTATATV 665
WLSYELQP GG+RIPFRVGLYTGEISTTRALDE D+PRHRLLVLVKDHGEP+LTATATV
Sbjct: 605 WLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATV 664
Query: 666 LVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTALRCSA 725
LVSLVESGQAPKASS+ AGA PEAALVDVNVYLI+AIC VSSLLVLTLLLYTAL SA
Sbjct: 665 LVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTALWWSA 724
Query: 726 PPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCPISRDR 785
PTEG C PGKPTLVCS AVGSWSYSQQR+QRVCS EG PKTDLMAFSPSLP +
Sbjct: 725 TPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLNKEEE 784
Query: 786 EEKQD 790
E+Q+
Sbjct: 785 GERQE 789
>gi|14165392 protocadherin alpha 12 isoform 2 precursor [Homo
sapiens]
Length = 792
Score = 1169 bits (3025), Expect = 0.0
Identities = 605/768 (78%), Positives = 657/768 (85%)
Query: 9 PGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVAS 68
PG+Q LLLSLLLLAA EVGSGQLHYSV EEAKHGTFVGRIAQDLGLELAELVPRLFRVAS
Sbjct: 9 PGSQRLLLSLLLLAAWEVGSGQLHYSVYEEAKHGTFVGRIAQDLGLELAELVPRLFRVAS 68
Query: 69 KRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDIND 128
KRHGDLLEVNLQNGILFVNSRIDRE+LCGRSAECSIHLEVIVDRPLQVFHV+VEVKDIND
Sbjct: 69 KRHGDLLEVNLQNGILFVNSRIDREKLCGRSAECSIHLEVIVDRPLQVFHVDVEVKDIND 128
Query: 129 NAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTLDVKRNDEE 188
N PVF + + +SES S F LEGASDADIG NSLLTY+L E F L +K ++
Sbjct: 129 NPPVFREREQKVPVSESAPLDSHFPLEGASDADIGVNSLLTYALSLNENFELKIKTKKDK 188
Query: 189 IKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAPAFERTIYK 248
LVL+K L+RE TPK LL+ IDGGKPELTG+ Q++ITVLDVNDN PAF++ YK
Sbjct: 189 SILPELVLRKLLDREQTPKLNLLLMVIDGGKPELTGSVQIQITVLDVNDNGPAFDKPSYK 248
Query: 249 VRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNGQISVKGNI 308
V L EN N T V+ +NA+D DEG+N +I+Y + F ++P G+I + G +
Sbjct: 249 VVLSENVQNDTRVIQLNASDPDEGLNGEISYGIKMILPVSEKCMFSINPDTGEIRIYGEL 308
Query: 309 DFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVLEDSPLSTV 368
DFEE+ +YEIQV A DKG P M+ H VL+E++D+NDNVPE+++ SLSLPV ED+ + TV
Sbjct: 309 DFEENNAYEIQVNAIDKGIPSMAGHSMVLVEVLDVNDNVPEVMVTSLSLPVQEDAQVGTV 368
Query: 369 IALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSAYELVVTAR 428
IALISVSDRDSG NGQV CSLTPHVPFKLVST+KNYYSLVLDS LDRESVSAYELVVTAR
Sbjct: 369 IALISVSDRDSGANGQVICSLTPHVPFKLVSTYKNYYSLVLDSALDRESVSAYELVVTAR 428
Query: 429 DGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSARDADAQENA 488
DGGSPSLWATA VSVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSA DADAQ+NA
Sbjct: 429 DGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQKNA 488
Query: 489 LVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSN 548
LVSYSLVERRVGE ALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSN
Sbjct: 489 LVSYSLVERRVGEHALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSN 548
Query: 549 VTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAWLS 608
VTLQVFVLDENDNAPALL G GGAVSELVPRSVGAGHVVAKVRAVDADSGYNAWLS
Sbjct: 549 VTLQVFVLDENDNAPALLATPAGSAGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAWLS 608
Query: 609 YELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLTATATVLVS 668
YELQP GA IPF VGLYTGEISTTR LDE DAPRHRLLVLVKDHGEP+LT+TATVLVS
Sbjct: 609 YELQPAAVGAHIPFHVGLYTGEISTTRILDEADAPRHRLLVLVKDHGEPALTSTATVLVS 668
Query: 669 LVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTALRCSAPPT 728
LVE+GQAPK SS+AS GA PEAALVD+NVYLI+AICAVSSLLVLTLLLYTALRCSAPPT
Sbjct: 669 LVENGQAPKTSSRASVGAVDPEAALVDINVYLIIAICAVSSLLVLTLLLYTALRCSAPPT 728
Query: 729 EGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSL 776
C PGKPTLVCSSAVGSWSYSQQR+QRVCS E PKTDLMAFSPSL
Sbjct: 729 VSRCAPGKPTLVCSSAVGSWSYSQQRRQRVCSAESPPKTDLMAFSPSL 776
>gi|9256578 protocadherin alpha 12 isoform 1 precursor [Homo
sapiens]
Length = 941
Score = 1169 bits (3025), Expect = 0.0
Identities = 605/768 (78%), Positives = 657/768 (85%)
Query: 9 PGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVAS 68
PG+Q LLLSLLLLAA EVGSGQLHYSV EEAKHGTFVGRIAQDLGLELAELVPRLFRVAS
Sbjct: 9 PGSQRLLLSLLLLAAWEVGSGQLHYSVYEEAKHGTFVGRIAQDLGLELAELVPRLFRVAS 68
Query: 69 KRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDIND 128
KRHGDLLEVNLQNGILFVNSRIDRE+LCGRSAECSIHLEVIVDRPLQVFHV+VEVKDIND
Sbjct: 69 KRHGDLLEVNLQNGILFVNSRIDREKLCGRSAECSIHLEVIVDRPLQVFHVDVEVKDIND 128
Query: 129 NAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTLDVKRNDEE 188
N PVF + + +SES S F LEGASDADIG NSLLTY+L E F L +K ++
Sbjct: 129 NPPVFREREQKVPVSESAPLDSHFPLEGASDADIGVNSLLTYALSLNENFELKIKTKKDK 188
Query: 189 IKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAPAFERTIYK 248
LVL+K L+RE TPK LL+ IDGGKPELTG+ Q++ITVLDVNDN PAF++ YK
Sbjct: 189 SILPELVLRKLLDREQTPKLNLLLMVIDGGKPELTGSVQIQITVLDVNDNGPAFDKPSYK 248
Query: 249 VRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNGQISVKGNI 308
V L EN N T V+ +NA+D DEG+N +I+Y + F ++P G+I + G +
Sbjct: 249 VVLSENVQNDTRVIQLNASDPDEGLNGEISYGIKMILPVSEKCMFSINPDTGEIRIYGEL 308
Query: 309 DFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVLEDSPLSTV 368
DFEE+ +YEIQV A DKG P M+ H VL+E++D+NDNVPE+++ SLSLPV ED+ + TV
Sbjct: 309 DFEENNAYEIQVNAIDKGIPSMAGHSMVLVEVLDVNDNVPEVMVTSLSLPVQEDAQVGTV 368
Query: 369 IALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSAYELVVTAR 428
IALISVSDRDSG NGQV CSLTPHVPFKLVST+KNYYSLVLDS LDRESVSAYELVVTAR
Sbjct: 369 IALISVSDRDSGANGQVICSLTPHVPFKLVSTYKNYYSLVLDSALDRESVSAYELVVTAR 428
Query: 429 DGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSARDADAQENA 488
DGGSPSLWATA VSVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSA DADAQ+NA
Sbjct: 429 DGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQKNA 488
Query: 489 LVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSN 548
LVSYSLVERRVGE ALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSN
Sbjct: 489 LVSYSLVERRVGEHALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSN 548
Query: 549 VTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAWLS 608
VTLQVFVLDENDNAPALL G GGAVSELVPRSVGAGHVVAKVRAVDADSGYNAWLS
Sbjct: 549 VTLQVFVLDENDNAPALLATPAGSAGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAWLS 608
Query: 609 YELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLTATATVLVS 668
YELQP GA IPF VGLYTGEISTTR LDE DAPRHRLLVLVKDHGEP+LT+TATVLVS
Sbjct: 609 YELQPAAVGAHIPFHVGLYTGEISTTRILDEADAPRHRLLVLVKDHGEPALTSTATVLVS 668
Query: 669 LVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTALRCSAPPT 728
LVE+GQAPK SS+AS GA PEAALVD+NVYLI+AICAVSSLLVLTLLLYTALRCSAPPT
Sbjct: 669 LVENGQAPKTSSRASVGAVDPEAALVDINVYLIIAICAVSSLLVLTLLLYTALRCSAPPT 728
Query: 729 EGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSL 776
C PGKPTLVCSSAVGSWSYSQQR+QRVCS E PKTDLMAFSPSL
Sbjct: 729 VSRCAPGKPTLVCSSAVGSWSYSQQRRQRVCSAESPPKTDLMAFSPSL 776
>gi|14165394 protocadherin alpha 6 isoform 3 precursor [Homo
sapiens]
Length = 686
Score = 804 bits (2077), Expect = 0.0
Identities = 404/534 (75%), Positives = 462/534 (86%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
M+F+ + G QCLLL LLLLAA +VGSGQLHYSV EEAKHGTFVGRIAQDLGLELAELV
Sbjct: 1 MVFTPEDRLGKQCLLLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFR+ASK DLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHV+
Sbjct: 61 PRLFRMASKDREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
VEV+DINDN P+FP+ + + I ESR P S F LEGASDAD+G+NS+LTY L S+EYF L
Sbjct: 121 VEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGL 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
DVK N ++ K +GL+LKK+L+RE+ P H L +TA DGGKPELTGT QL +TVLDVNDNAP
Sbjct: 181 DVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
FE++ Y+VR+ ENA NGT V+ +NA+D DEG N I+YSFN+ ++A ++ F +D G
Sbjct: 241 TFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
+I ++GN+DFE+ Y+I ++ATDKG+PPM+ HCTVL+ I+D NDNVPE+ + SLSLPV
Sbjct: 301 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
ED+ TVIALISV+D DSG NGQV CSLTPHVPFKLVSTFKNYYSLVLDS LDRESVSA
Sbjct: 361 EDAQFGTVIALISVNDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATAS+SVEVAD+NDNAPAF+Q EYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQ 534
DADAQENALVSYSLVERRVGERALSSY+SVHAESGKVYALQPLDHEELELLQFQ
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQ 534
Score = 162 bits (409), Expect = 2e-39
Identities = 134/438 (30%), Positives = 199/438 (45%), Gaps = 26/438 (5%)
Query: 253 ENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNGQISVKGNIDFEE 312
E A +GT V + A DL + + + F S D ++ NG + V ID EE
Sbjct: 37 EEAKHGTFVGRI-AQDLGLELAELVPRLFRM-ASKDREDLLEVNLQNGILFVNSRIDREE 94
Query: 313 --SKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVLEDSPLSTVIA 370
+S E + + P+ V +E+ DINDN P ++ + + E +V
Sbjct: 95 LCGRSAECSIHLEVIVDRPLQVF-HVDVEVRDINDNPPLFPVEEQRVLIYESRLPDSVFP 153
Query: 371 LISVSDRDSGVNGQVTCSLTPHVPF----KLVSTFKNYYSLVLDSPLDRESVSAYELVVT 426
L SD D G N +T L+ F K+ S L+L LDRE A+ L +T
Sbjct: 154 LEGASDADVGSNSILTYKLSSSEYFGLDVKINSDDNKQIGLLLKKSLDREEAPAHNLFLT 213
Query: 427 ARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSARDADAQE 486
A DGG P L T + V V DVNDNAP F QSEY V + EN G + ++A D D
Sbjct: 214 ATDGGKPELTGTVQLLVTVLDVNDNAPTFEQSEYEVRIFENADNGTTVIRLNASDRDEGA 273
Query: 487 NALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLG 546
N +SYS + + + S+ +G++ LD E+ L + + A D G PP+
Sbjct: 274 NGAISYSF--NSLVAAMVIDHFSIDRNTGEIVIRGNLDFEQENLYKILIDATDKGHPPMA 331
Query: 547 SNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAW 606
+ T+ V +LD+NDN P + + ++S V G V+A + D DSG N
Sbjct: 332 GHCTVLVRILDKNDNVPEIALT-------SLSLPVREDAQFGTVIALISVNDLDSGANGQ 384
Query: 607 LSYELQPGTGGARIPFR-VGLYTGEISTT--RALDEVDAPRHRLLVLVKDHGEPSLTATA 663
++ L P +PF+ V + S ALD + L+V +D G PSL ATA
Sbjct: 385 VNCSLTP-----HVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPSLWATA 439
Query: 664 TVLVSLVESGQAPKASSQ 681
++ V + + A +Q
Sbjct: 440 SLSVEVADMNDNAPAFAQ 457
Score = 157 bits (398), Expect = 3e-38
Identities = 126/466 (27%), Positives = 210/466 (45%), Gaps = 19/466 (4%)
Query: 230 ITVLDVNDNAPAFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADI 289
+ V D+NDN P F +V + E+ ++ A+D D G N + Y ++ +
Sbjct: 121 VEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGL 180
Query: 290 LSKFHLDPVNGQISV--KGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNV 347
K + D N QI + K ++D EE+ ++ + + ATD G P ++ +L+ ++D+NDN
Sbjct: 181 DVKINSDD-NKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNA 239
Query: 348 PELVIQSLSLPVLEDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTF---KNY 404
P + + E++ T + ++ SDRD G NG ++ S V ++ F +N
Sbjct: 240 PTFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNT 299
Query: 405 YSLVLDSPLDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFV 464
+V+ LD E + Y++++ A D G P + +V V + D NDN P + + ++ V
Sbjct: 300 GEIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPV 359
Query: 465 KENNPPGCHIFTVSARDADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLD 524
+E+ G I +S D D+ N V+ SL V + +S++ + ++ + LD
Sbjct: 360 REDAQFGTVIALISVNDLDSGANGQVNCSLTPH-VPFKLVSTFKNYYS----LVLDSALD 414
Query: 525 HEELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRS 584
E + + V+ARD G P L + +L V V D NDNAPA P + V +
Sbjct: 415 RESVSAYELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPE-------YTVFVKEN 467
Query: 585 VGAGHVVAKVRAVDADSGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPR 644
G + V A DAD+ NA +SY L G R E AL +D
Sbjct: 468 NPPGCHIFTVSARDADAQENALVSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEE 527
Query: 645 HRLLVLVKDHGEPSLTATATVLVSLVESGQAPKASSQASAGATGPE 690
LL P +A++ + S +A AG GP+
Sbjct: 528 LELLQFQPRQPNPDWRYSASLRAGMHSSVHLEEAGI-LRAGPGGPD 572
>gi|14165402 protocadherin alpha 1 isoform 3 precursor [Homo
sapiens]
Length = 686
Score = 795 bits (2054), Expect = 0.0
Identities = 404/534 (75%), Positives = 462/534 (86%)
Query: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
M+FS R GA+ LLL LLLLAA EVGSGQLHYS+ EEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
PRLFRVASK H DLLEVNLQNGILFVNSRIDREELC SAECSIHLE+I DRPLQVFHVE
Sbjct: 61 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
Query: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
V+VKDINDN PVF + +FI ESR SRF +EGA+DADIG N+LLTY+L ++YF+L
Sbjct: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
Query: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
DV+ +DE KSL L L+K L+RE+TP+ +LL+TA DGGKPEL GT +L ITVLDVNDNAP
Sbjct: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
Query: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
F++ +Y+V LLE NGTLV T+NA+D DEGVN ++ +SF++ +S DI KF +D +G
Sbjct: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
Query: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
+I + +D+EE+KSYEIQV+A DKG+PPMS+HC VL++++D+NDN PEL + SL LP+
Sbjct: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
Query: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
ED+PLSTVIALI+VSDRDSG NGQVTCSL PHVPFKLVSTFKNYYSLVLDS LDRES+S
Sbjct: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
YELVVTARDGGSPSLWATA VSVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQ 534
DADAQENALVSYSLVERRVGERALS+YVSVHAESGKVYALQPLDHEELELLQFQ
Sbjct: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQ 534
Score = 151 bits (381), Expect = 3e-36
Identities = 142/448 (31%), Positives = 202/448 (45%), Gaps = 46/448 (10%)
Query: 253 ENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPV-----NGQISVKGN 307
E A +GT V V A DL + + + F + SK H D + NG + V
Sbjct: 37 EEAKHGTFVGRV-AQDLGLELAELVPRLFR------VASKTHRDLLEVNLQNGILFVNSR 89
Query: 308 IDFEE----SKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVLEDS 363
ID EE S I +E P H V ++ DINDN P + + + E
Sbjct: 90 IDREELCQWSAECSIHLELI-ADRPLQVFHVEV--KVKDINDNPPVFRGREQIIFIPESR 146
Query: 364 PLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYS----LVLDSPLDRESVS 419
L++ + +D D G N +T +L+P F L + S L L LDRE
Sbjct: 147 LLNSRFPIEGAADADIGANALLTYTLSPSDYFSLDVEASDELSKSLWLELRKYLDREETP 206
Query: 420 AYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSA 479
L++TA DGG P L T + + V DVNDNAP F Q+ Y V + E G + T++A
Sbjct: 207 ELHLLLTATDGGKPELQGTVELLITVLDVNDNAPLFDQAVYRVHLLETTANGTLVTTLNA 266
Query: 480 RDADAQENALVSYSL---VERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVS 536
DAD N V +S + R + E+ V + SG++ + LD+EE + + QV
Sbjct: 267 SDADEGVNGEVVFSFDSGISRDIQEK-----FKVDSSSGEIRLIDKLDYEETKSYEIQVK 321
Query: 537 ARDAGVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRA 596
A D G PP+ ++ + V VLD NDNAP L V + + E P S V+A +
Sbjct: 322 AVDKGSPPMSNHCKVLVKVLDVNDNAPEL---AVTSLYLPIREDAPLST----VIALITV 374
Query: 597 VDADSGYNAWLSYELQPGTGGARIPFR-VGLYTGEISTT--RALDEVDAPRHRLLVLVKD 653
D DSG N ++ L P +PF+ V + S ALD + L+V +D
Sbjct: 375 SDRDSGANGQVTCSLMP-----HVPFKLVSTFKNYYSLVLDSALDRESLSVYELVVTARD 429
Query: 654 HGEPSLTATATVLVSLVESGQAPKASSQ 681
G PSL ATA V V + + A +Q
Sbjct: 430 GGSPSLWATARVSVEVADVNDNAPAFAQ 457
Score = 150 bits (378), Expect = 6e-36
Identities = 132/473 (27%), Positives = 209/473 (44%), Gaps = 29/473 (6%)
Query: 228 LKITVLDVNDNAPAFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYS------F 281
+++ V D+NDN P F + + E+ + A D D G N + Y+ F
Sbjct: 119 VEVKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYF 178
Query: 282 NTDMSA-DILSKFHLDPVNGQISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEI 340
+ D+ A D LSK + + ++ +D EE+ + + ATD G P + +L+ +
Sbjct: 179 SLDVEASDELSK------SLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITV 232
Query: 341 VDINDNVPELVIQSLSLPVLEDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVST 400
+D+NDN P + +LE + T++ ++ SD D GVNG+V S + +
Sbjct: 233 LDVNDNAPLFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEK 292
Query: 401 FKNYYS---LVLDSPLDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQ 457
FK S + L LD E +YE+ V A D GSP + V V+V DVNDNAP +
Sbjct: 293 FKVDSSSGEIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAV 352
Query: 458 SEYTVFVKENNPPGCHIFTVSARDADAQENALVSYSLVERRVGERALSSYVSVHAESGKV 517
+ + ++E+ P I ++ D D+ N V+ SL+ V + +S++ + ++ +
Sbjct: 353 TSLYLPIREDAPLSTVIALITVSDRDSGANGQVTCSLMPH-VPFKLVSTFKNYYS----L 407
Query: 518 YALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAV 577
LD E L + + V+ARD G P L + + V V D NDNAPA P
Sbjct: 408 VLDSALDRESLSVYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPE-------Y 460
Query: 578 SELVPRSVGAGHVVAKVRAVDADSGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRAL 637
+ V + G + V A DAD+ NA +SY L G R E AL
Sbjct: 461 TVFVKENNPPGCHIFTVSARDADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYAL 520
Query: 638 DEVDAPRHRLLVLVKDHGEPSLTATATVLVSLVESGQAPKASSQASAGATGPE 690
+D LL P +A++ + S +A AG GP+
Sbjct: 521 QPLDHEELELLQFQPRQPNPDWRYSASLRAGMHSSVHLEEAGI-LRAGPGGPD 572
>gi|14165383 protocadherin alpha 10 isoform 3 precursor [Homo
sapiens]
Length = 685
Score = 774 bits (1998), Expect = 0.0
Identities = 396/525 (75%), Positives = 443/525 (84%)
Query: 10 GAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVASK 69
G QCLLLSLLLLAA EVGSGQLHYSV EEA+HGTFVGRIAQDLGLELAELV RLFRVASK
Sbjct: 9 GVQCLLLSLLLLAAWEVGSGQLHYSVYEEARHGTFVGRIAQDLGLELAELVQRLFRVASK 68
Query: 70 RHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDINDN 129
RHGDLLEVNLQNGILFVNSRIDREELCGRS ECSIHLEVIVDRPLQVFHV+VEVKDINDN
Sbjct: 69 RHGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVDVEVKDINDN 128
Query: 130 APVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTLDVKRNDEEI 189
P F + + L I ESR SRF LEGASDAD+G N+LLTY L EYF LD+ ++
Sbjct: 129 PPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVLDIINKKDKD 188
Query: 190 KSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAPAFERTIYKV 249
K LVL+K L+RE+ P+ LL+TA DGGKPE TG+ L I VLD NDNAP F+R +Y+V
Sbjct: 189 KFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAPIFDRPVYEV 248
Query: 250 RLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNGQISVKGNID 309
++ EN N TLV+ +NA+D DEG+NK++ YSF++ + I KF ++ G+I V ID
Sbjct: 249 KMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTGEIKVNDAID 308
Query: 310 FEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVLEDSPLSTVI 369
FE+S +YEI V+ TDKGNPPM HCTVL+E++D NDN PE+++ SLSLPV ED+ + TVI
Sbjct: 309 FEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVKEDAQVGTVI 368
Query: 370 ALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSAYELVVTARD 429
ALISVSD DSG NGQVTCSLTPHVPFKLVST+KNYYSLVLDS LDRE VSAYELVVTARD
Sbjct: 369 ALISVSDHDSGANGQVTCSLTPHVPFKLVSTYKNYYSLVLDSALDRERVSAYELVVTARD 428
Query: 430 GGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSARDADAQENAL 489
GGSP LWATASVSVEVADVNDNAPAF+QSEYTVFVKENNPPGCHIFTVSA DADAQENAL
Sbjct: 429 GGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAWDADAQENAL 488
Query: 490 VSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQ 534
VSYSLVERR+GER+LSSYVSVHAESGKVYALQPLDHEELELLQFQ
Sbjct: 489 VSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQ 533
Score = 142 bits (357), Expect = 2e-33
Identities = 127/468 (27%), Positives = 207/468 (44%), Gaps = 23/468 (4%)
Query: 230 ITVLDVNDNAPAFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSF--NTDMSA 287
+ V D+NDN P F T K+ + E+ + A+D D G N + Y N
Sbjct: 120 VEVKDINDNPPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVL 179
Query: 288 DILSKFHLD--PVNGQISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDIND 345
DI++K D PV + ++ +D EE+ ++ + ATD G P + ++L+ ++D ND
Sbjct: 180 DIINKKDKDKFPV---LVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDAND 236
Query: 346 NVPELVIQSLSLPVLEDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTF---K 402
N P + + E+ T++ ++ SD D G+N ++ S + VP + F +
Sbjct: 237 NAPIFDRPVYEVKMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINE 296
Query: 403 NYYSLVLDSPLDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTV 462
+ ++ +D E + YE+ V D G+P + +V VE+ D NDN+P + ++
Sbjct: 297 RTGEIKVNDAIDFEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSL 356
Query: 463 FVKENNPPGCHIFTVSARDADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQP 522
VKE+ G I +S D D+ N V+ SL V + +S+Y + ++ +
Sbjct: 357 PVKEDAQVGTVIALISVSDHDSGANGQVTCSLTPH-VPFKLVSTYKNYYS----LVLDSA 411
Query: 523 LDHEELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVP 582
LD E + + V+ARD G PPL + ++ V V D NDNAPA + V
Sbjct: 412 LDRERVSAYELVVTARDGGSPPLWATASVSVEVADVNDNAPAFAQ-------SEYTVFVK 464
Query: 583 RSVGAGHVVAKVRAVDADSGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDA 642
+ G + V A DAD+ NA +SY L G R E AL +D
Sbjct: 465 ENNPPGCHIFTVSAWDADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDH 524
Query: 643 PRHRLLVLVKDHGEPSLTATATVLVSLVESGQAPKASSQASAGATGPE 690
LL P +A++ + S +A AG GP+
Sbjct: 525 EELELLQFQPRQPNPDWRYSASLRAGMHSSVHLEEAGI-LRAGPGGPD 571
>gi|14277677 protocadherin gamma subfamily C, 3 isoform 2 precursor
[Homo sapiens]
Length = 863
Score = 614 bits (1584), Expect = e-176
Identities = 319/698 (45%), Positives = 453/698 (64%), Gaps = 8/698 (1%)
Query: 18 LLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKRHGDLLEV 77
LLLL A S +HY + EE + G VG + +LGL+L L R FRV S EV
Sbjct: 20 LLLLGALNKASTVIHYEIPEEREKGFAVGNVVANLGLDLGSLSARRFRVVSGASRRFFEV 79
Query: 78 NLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDINDNAPVFPMAV 137
N + G +FVN R+DREELCG C++ LE++V+ PL++F VEV ++DINDN P FP
Sbjct: 80 NRETGEMFVNDRLDREELCGTLPSCTVTLELVVENPLELFSVEVVIQDINDNNPAFPTQE 139
Query: 138 KNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTLDVKRNDEEIKSLGLVLK 197
L ISE+ PG+RF LE A D D+G+NSL TY L EYF L V+ ++ K LVL+
Sbjct: 140 MKLEISEAVAPGTRFPLESAHDPDVGSNSLQTYELSRNEYFALRVQTREDSTKYAELVLE 199
Query: 198 KNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAPAFERTIYKVRLLENAPN 257
+ L+RE P L++TA+DGG P L+ + + I VLD NDNAP F +++Y+ R+LE+AP+
Sbjct: 200 RALDREREPSLQLVLTALDGGTPALSASLPIHIKVLDANDNAPVFNQSLYRARVLEDAPS 259
Query: 258 GTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNGQISVKGNIDFEESKSYE 317
GT VV V ATDLDEG N +I YSF + A + F LD V G +++KG +DFE++K +E
Sbjct: 260 GTRVVQVLATDLDEGPNGEIIYSFGSHNRAGVRQLFALDLVTGMLTIKGRLDFEDTKLHE 319
Query: 318 IQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVLEDSPLSTVIALISVSDR 377
I ++A DKG P HC VL+E+VD+NDN PE+ + S+ PV ED+PL TVIAL+SV+D
Sbjct: 320 IYIQAKDKGANPEGAHCKVLVEVVDVNDNAPEITVTSVYSPVPEDAPLGTVIALLSVTDL 379
Query: 378 DSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSAYELVVTARDGGSPSLWA 437
D+G NG VTC + P +PF L S+ KNY++L + LDRE+V Y L +TARD G+PSL A
Sbjct: 380 DAGENGLVTCEVPPGLPFSLTSSLKNYFTLKTSADLDRETVPEYNLSITARDAGTPSLSA 439
Query: 438 TASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSARDADAQENALVSYSLVER 497
V V+V+D+NDN P SQS Y V+++ENN PG I +S D DA +NA +S+ L+E+
Sbjct: 440 LTIVRVQVSDINDNPPQSSQSSYDVYIEENNLPGAPILNLSVWDPDAPQNARLSFFLLEQ 499
Query: 498 RVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVFVLD 557
+ Y +++ ++G V +L PLD+E+ + D G P L +N+++ +FV D
Sbjct: 500 GAETGLVGRYFTINRDNGIVSSLVPLDYEDRREFELTAHISDGGTPVLATNISVNIFVTD 559
Query: 558 ENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAWLSYELQPGTGG 617
NDNAP +L PR GG+ E++PR AGH+V++V DAD+G+NAWLSY L
Sbjct: 560 RNDNAPQVLYPRP---GGSSVEMLPRGTSAGHLVSRVVGWDADAGHNAWLSYSLLGSPNQ 616
Query: 618 ARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLTATATVLVSLVESGQAPK 677
+ F +GL+TG+IST R + + D+PR L VL+KD+GEPSL+ TAT+ VS+ E +P+
Sbjct: 617 SL--FAIGLHTGQISTARPVQDTDSPRQTLTVLIKDNGEPSLSTTATLTVSVTE--DSPE 672
Query: 678 ASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTL 715
A ++ +G + P ++ YL++++ VS V+T+
Sbjct: 673 ARAEFPSG-SAPREQKKNLTFYLLLSLILVSVGFVVTV 709
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,653,232
Number of Sequences: 37866
Number of extensions: 1438147
Number of successful extensions: 10358
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3218
Number of HSP's gapped (non-prelim): 733
length of query: 824
length of database: 18,247,518
effective HSP length: 111
effective length of query: 713
effective length of database: 14,044,392
effective search space: 10013651496
effective search space used: 10013651496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.