Search of human proteins with 14165400

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14165400 protocadherin alpha 1 isoform 2 precursor [Homo
sapiens]
         (807 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14165400 protocadherin alpha 1 isoform 2 precursor [Homo sapi...  1578   0.0  
gi|9256582 protocadherin alpha 1 isoform 1 precursor [Homo sapiens]  1558   0.0  
gi|14165405 protocadherin alpha 2 isoform 2 precursor [Homo sapi...  1232   0.0  
gi|9256584 protocadherin alpha 2 isoform 1 precursor [Homo sapiens]  1232   0.0  
gi|9256590 protocadherin alpha 5 isoform 1 precursor [Homo sapiens]  1226   0.0  
gi|14165410 protocadherin alpha 3 isoform 2 precursor [Homo sapi...  1224   0.0  
gi|14165416 protocadherin alpha 5 isoform 2 precursor [Homo sapi...  1223   0.0  
gi|9256586 protocadherin alpha 3 isoform 1 precursor [Homo sapiens]  1220   0.0  
gi|14165422 protocadherin alpha 8 isoform 2 precursor [Homo sapi...  1219   0.0  
gi|9256596 protocadherin alpha 8 isoform 1 precursor [Homo sapiens]  1215   0.0  
gi|9256588 protocadherin alpha 4 isoform 1 precursor [Homo sapiens]  1211   0.0  
gi|14165413 protocadherin alpha 4 isoform 2 precursor [Homo sapi...  1210   0.0  
gi|14165390 protocadherin alpha 6 isoform 2 precursor [Homo sapi...  1206   0.0  
gi|9256592 protocadherin alpha 6 isoform 1 precursor [Homo sapiens]  1204   0.0  
gi|14165397 protocadherin alpha 13 isoform 2 precursor [Homo sap...  1201   0.0  
gi|7662068 protocadherin alpha 9 isoform 2 precursor [Homo sapiens]  1201   0.0  
gi|9256594 protocadherin alpha 7 isoform 1 precursor [Homo sapiens]  1200   0.0  
gi|9256580 protocadherin alpha 13 isoform 1 precursor [Homo sapi...  1199   0.0  
gi|14165425 protocadherin alpha 9 isoform 1 precursor [Homo sapi...  1199   0.0  
gi|14165387 protocadherin alpha 11 isoform 2 precursor [Homo sap...  1198   0.0  
gi|14165419 protocadherin alpha 7 isoform 2 precursor [Homo sapi...  1196   0.0  
gi|9256576 protocadherin alpha 11 isoform 1 precursor [Homo sapi...  1195   0.0  
gi|9256578 protocadherin alpha 12 isoform 1 precursor [Homo sapi...  1163   0.0  
gi|14165392 protocadherin alpha 12 isoform 2 precursor [Homo sap...  1161   0.0  
gi|14165381 protocadherin alpha 10 isoform 2 precursor [Homo sap...  1158   0.0  
gi|9256574 protocadherin alpha 10 isoform 1 precursor [Homo sapi...  1158   0.0  
gi|14165402 protocadherin alpha 1 isoform 3 precursor [Homo sapi...  1048   0.0  
gi|14165394 protocadherin alpha 6 isoform 3 precursor [Homo sapi...   780   0.0  
gi|14165383 protocadherin alpha 10 isoform 3 precursor [Homo sap...   775   0.0  
gi|14277677 protocadherin gamma subfamily C, 3 isoform 2 precurs...   592   e-169

>gi|14165400 protocadherin alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 807

 Score = 1578 bits (4086), Expect = 0.0
 Identities = 807/807 (100%), Positives = 807/807 (100%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
Sbjct: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
Sbjct: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
Sbjct: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
Sbjct: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
           LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
Sbjct: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
Sbjct: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
Sbjct: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
Sbjct: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780

Query: 781 NTSERNEQPEANLDLSGNVSPTFEFWL 807
           NTSERNEQPEANLDLSGNVSPTFEFWL
Sbjct: 781 NTSERNEQPEANLDLSGNVSPTFEFWL 807


>gi|9256582 protocadherin alpha 1 isoform 1 precursor [Homo sapiens]
          Length = 950

 Score = 1558 bits (4034), Expect = 0.0
 Identities = 798/798 (100%), Positives = 798/798 (100%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
Sbjct: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
Sbjct: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
Sbjct: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
Sbjct: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
           LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
Sbjct: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
Sbjct: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
Sbjct: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
Sbjct: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780

Query: 781 NTSERNEQPEANLDLSGN 798
           NTSERNEQPEANLDLSGN
Sbjct: 781 NTSERNEQPEANLDLSGN 798


>gi|14165405 protocadherin alpha 2 isoform 2 precursor [Homo
           sapiens]
          Length = 824

 Score = 1232 bits (3187), Expect = 0.0
 Identities = 638/791 (80%), Positives = 687/791 (86%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           M  S R G GA   LL LLLLAAWEVGSGQL YS+PEEAKHGTFVGR+AQDLGLEL ELV
Sbjct: 1   MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASK H DLLEVNLQNGILFVNSRIDREELC  SAECSIH+E+I DRPLQVFHVE
Sbjct: 61  PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V+VKDINDNPP+F    + I  PESRLL+SRFP+EGA+DADIG NALL+Y LS S++F L
Sbjct: 121 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           D++A+DELS+SL L L K LDREET E++LLL ATDGGKPEL GTV++LI VLDVNDN P
Sbjct: 181 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            F Q+VY+V LLE TANGTLV  LNASDADEG N E+V+S  S +S  IQ KF +D  SG
Sbjct: 241 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           EIR   KLDYEE KSYEIQV A DKG+P MS HCK+ +K++D+NDN PE+++TSL LPI 
Sbjct: 301 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           E+A L TVIALITVSDRDSG NG VTCSL PHVPFKLVSTFKNYYSLVLDSALDRES+S 
Sbjct: 361 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWAT  VS+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA 
Sbjct: 421 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERRVGERALS+YVSVHAESGKVYALQPLDHEE+ELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALLAPR G   GAVSELVP  VGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQ   G ARIPFRVGLYTGEISTTR LDEAD  R+RLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPKASSRA VG AG EA LVDVNVYLIIAICAVSSLLVLT+LLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCSVPPTEGA  PGKPTLVCSSA+GSWS SQQRRQRVCS E PPKTDLMAFSP LS   
Sbjct: 721 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP 780

Query: 781 NTSERNEQPEA 791
           +++E  +  E+
Sbjct: 781 DSAEEKQLSES 791


>gi|9256584 protocadherin alpha 2 isoform 1 precursor [Homo sapiens]
          Length = 948

 Score = 1232 bits (3187), Expect = 0.0
 Identities = 638/791 (80%), Positives = 687/791 (86%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           M  S R G GA   LL LLLLAAWEVGSGQL YS+PEEAKHGTFVGR+AQDLGLEL ELV
Sbjct: 1   MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASK H DLLEVNLQNGILFVNSRIDREELC  SAECSIH+E+I DRPLQVFHVE
Sbjct: 61  PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V+VKDINDNPP+F    + I  PESRLL+SRFP+EGA+DADIG NALL+Y LS S++F L
Sbjct: 121 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           D++A+DELS+SL L L K LDREET E++LLL ATDGGKPEL GTV++LI VLDVNDN P
Sbjct: 181 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            F Q+VY+V LLE TANGTLV  LNASDADEG N E+V+S  S +S  IQ KF +D  SG
Sbjct: 241 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           EIR   KLDYEE KSYEIQV A DKG+P MS HCK+ +K++D+NDN PE+++TSL LPI 
Sbjct: 301 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           E+A L TVIALITVSDRDSG NG VTCSL PHVPFKLVSTFKNYYSLVLDSALDRES+S 
Sbjct: 361 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWAT  VS+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA 
Sbjct: 421 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERRVGERALS+YVSVHAESGKVYALQPLDHEE+ELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALLAPR G   GAVSELVP  VGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQ   G ARIPFRVGLYTGEISTTR LDEAD  R+RLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPKASSRA VG AG EA LVDVNVYLIIAICAVSSLLVLT+LLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCSVPPTEGA  PGKPTLVCSSA+GSWS SQQRRQRVCS E PPKTDLMAFSP LS   
Sbjct: 721 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP 780

Query: 781 NTSERNEQPEA 791
           +++E  +  E+
Sbjct: 781 DSAEEKQLSES 791


>gi|9256590 protocadherin alpha 5 isoform 1 precursor [Homo sapiens]
          Length = 936

 Score = 1226 bits (3173), Expect = 0.0
 Identities = 628/799 (78%), Positives = 695/799 (86%), Gaps = 1/799 (0%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           MV+SRRG LG+R LLLWLLL A W+ GSGQLHYSIPEEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1   MVYSRRGSLGSRLLLLWLLL-AYWKAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELAELV 59

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASK   DLLEVNLQNGILFVNSRIDREELC+  AECSIHLE+I DRPLQVFHVE
Sbjct: 60  PRLFRVASKGRGDLLEVNLQNGILFVNSRIDREELCRRRAECSIHLEVIVDRPLQVFHVE 119

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V VKDINDNPP F  +EQ +FI ESR+ +SRFP+EGA+D DIGANA L Y L+P++YF L
Sbjct: 120 VAVKDINDNPPRFSRQEQRLFILESRMPDSRFPLEGASDLDIGANAQLRYRLNPNEYFDL 179

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           DV+ ++E +  L L LRK LDREET E  LL+ ATDGGKPEL GTV+LLI VLD NDNAP
Sbjct: 180 DVKTNEEETNFLELVLRKSLDREETQEHRLLVIATDGGKPELTGTVQLLINVLDANDNAP 239

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            FD+++Y V LLE   +GTLV  LNASDADEG+N E+V+ F + +  D++ KF ++S++G
Sbjct: 240 EFDKSIYNVRLLENAPSGTLVIKLNASDADEGINKEIVYFFSNLVLDDVKSKFIINSNTG 299

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           EI++  +LDYE+  SYEI + A+DK + P+S HCKV+VK+LDVNDN PE+A+T+L+LP++
Sbjct: 300 EIKVNGELDYEDYNSYEINIDAMDKSTFPLSGHCKVVVKLLDVNDNTPEMAITTLFLPVK 359

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           EDAPLSTVIALI+VSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRES+SV
Sbjct: 360 EDAPLSTVIALISVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESVSV 419

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATA VSVEVADVNDNAPAFAQP+YTVFVKENNPPGCHIFTVSAR
Sbjct: 420 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPQYTVFVKENNPPGCHIFTVSAR 479

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERRVGER LS+YVSVHAESGKVYALQPLDHEE+ELLQFQVSARDA
Sbjct: 480 DADAQENALVSYSLVERRVGERPLSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 539

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALL PRVGGT GAVSELVPR VGAGHVVAKVRAVD D
Sbjct: 540 GVPPLGSNVTLQVFVLDENDNAPALLVPRVGGTGGAVSELVPRSVGAGHVVAKVRAVDPD 599

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQPA G ARIPFRVGLYTGEISTTR LDE +  R+RLLVLVKDHGEP LT
Sbjct: 600 SGYNAWLSYELQPAPGSARIPFRVGLYTGEISTTRSLDETEAPRHRLLVLVKDHGEPPLT 659

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPKASSRAS G  GPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 660 ATATVLVSLVESGQAPKASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 719

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCS  PTE     GKPTL+CSSA+GSWS SQQRRQRVCS E PPKTDLMAFSP L    
Sbjct: 720 LRCSAQPTEAVCTRGKPTLLCSSAVGSWSYSQQRRQRVCSGEAPPKTDLMAFSPSLPQGP 779

Query: 781 NTSERNEQPEANLDLSGNV 799
            +++   QP  +   S ++
Sbjct: 780 TSTDNPRQPNPDWRYSASL 798


>gi|14165410 protocadherin alpha 3 isoform 2 precursor [Homo
           sapiens]
          Length = 824

 Score = 1224 bits (3168), Expect = 0.0
 Identities = 628/806 (77%), Positives = 700/806 (86%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           M+FS R   GA+ LLL LLLLAA EVGSGQLHYS+ EEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1   MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASK H DLLEVNLQNGILFVNSRIDREELC  SAECSIHLE+I DRPLQVFHVE
Sbjct: 61  PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V+VKDINDN PVF    + +FI ESR   SRF +EGA+DADIG N+LLTY+L  ++YF+L
Sbjct: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           DV+ +DE  KSL L L+K L+RE+TP+ +LL+TA DGGKPEL GT +L ITVLDVNDNAP
Sbjct: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            F++ +Y+V LLE   NGTLV T+NA+D DEGVN ++ +SF++ +S DI  KF +D  +G
Sbjct: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           +I +   +D+EE+KSYEIQV+A DKG+PPMS+HC VL++++D+NDN PEL + SL LP+ 
Sbjct: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           ED+PLSTVIALI+VSDRDSG NGQVTCSL PHVPFKLVSTFKNYYSLVLDS LDRES+S 
Sbjct: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATA VSVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERRVGERALS+YVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALL PRVGG  GAVSELVPR VGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQP  GGARIPFRVGLYTGEISTTR LDE D  R+RLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPKASS+AS G  GPEAALVDVNVYLI+AICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCS PPTEG   PGKPTLVCSSA+GSWS SQQR+QRVCS EG PKTDLMAFSP L P  
Sbjct: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780

Query: 781 NTSERNEQPEANLDLSGNVSPTFEFW 806
            + +R E+ + ++DLS  VS  + F+
Sbjct: 781 ISRDREEKQDVDVDLSAKVSNFYLFF 806


>gi|14165416 protocadherin alpha 5 isoform 2 precursor [Homo
           sapiens]
          Length = 816

 Score = 1223 bits (3164), Expect = 0.0
 Identities = 629/786 (80%), Positives = 690/786 (87%), Gaps = 2/786 (0%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           MV+SRRG LG+R LLLWLLL A W+ GSGQLHYSIPEEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1   MVYSRRGSLGSRLLLLWLLL-AYWKAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELAELV 59

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASK   DLLEVNLQNGILFVNSRIDREELC+  AECSIHLE+I DRPLQVFHVE
Sbjct: 60  PRLFRVASKGRGDLLEVNLQNGILFVNSRIDREELCRRRAECSIHLEVIVDRPLQVFHVE 119

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V VKDINDNPP F  +EQ +FI ESR+ +SRFP+EGA+D DIGANA L Y L+P++YF L
Sbjct: 120 VAVKDINDNPPRFSRQEQRLFILESRMPDSRFPLEGASDLDIGANAQLRYRLNPNEYFDL 179

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           DV+ ++E +  L L LRK LDREET E  LL+ ATDGGKPEL GTV+LLI VLD NDNAP
Sbjct: 180 DVKTNEEETNFLELVLRKSLDREETQEHRLLVIATDGGKPELTGTVQLLINVLDANDNAP 239

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            FD+++Y V LLE   +GTLV  LNASDADEG+N E+V+ F + +  D++ KF ++S++G
Sbjct: 240 EFDKSIYNVRLLENAPSGTLVIKLNASDADEGINKEIVYFFSNLVLDDVKSKFIINSNTG 299

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           EI++  +LDYE+  SYEI + A+DK + P+S HCKV+VK+LDVNDN PE+A+T+L+LP++
Sbjct: 300 EIKVNGELDYEDYNSYEINIDAMDKSTFPLSGHCKVVVKLLDVNDNTPEMAITTLFLPVK 359

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           EDAPLSTVIALI+VSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRES+SV
Sbjct: 360 EDAPLSTVIALISVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESVSV 419

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATA VSVEVADVNDNAPAFAQP+YTVFVKENNPPGCHIFTVSAR
Sbjct: 420 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPQYTVFVKENNPPGCHIFTVSAR 479

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERRVGER LS+YVSVHAESGKVYALQPLDHEE+ELLQFQVSARDA
Sbjct: 480 DADAQENALVSYSLVERRVGERPLSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 539

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALL PRVGGT GAVSELVPR VGAGHVVAKVRAVD D
Sbjct: 540 GVPPLGSNVTLQVFVLDENDNAPALLVPRVGGTGGAVSELVPRSVGAGHVVAKVRAVDPD 599

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQPA G ARIPFRVGLYTGEISTTR LDE +  R+RLLVLVKDHGEP LT
Sbjct: 600 SGYNAWLSYELQPAPGSARIPFRVGLYTGEISTTRSLDETEAPRHRLLVLVKDHGEPPLT 659

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPKASSRAS G  GPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 660 ATATVLVSLVESGQAPKASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 719

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCS  PTE     GKPTL+CSSA+GSWS SQQRRQRVCS E PPKTDLMAFSP L P  
Sbjct: 720 LRCSAQPTEAVCTRGKPTLLCSSAVGSWSYSQQRRQRVCSGEAPPKTDLMAFSPSL-PQG 778

Query: 781 NTSERN 786
            TS  N
Sbjct: 779 PTSTDN 784


>gi|9256586 protocadherin alpha 3 isoform 1 precursor [Homo sapiens]
          Length = 950

 Score = 1220 bits (3157), Expect = 0.0
 Identities = 625/796 (78%), Positives = 695/796 (87%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           M+FS R   GA+ LLL LLLLAA EVGSGQLHYS+ EEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1   MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASK H DLLEVNLQNGILFVNSRIDREELC  SAECSIHLE+I DRPLQVFHVE
Sbjct: 61  PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V+VKDINDN PVF    + +FI ESR   SRF +EGA+DADIG N+LLTY+L  ++YF+L
Sbjct: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           DV+ +DE  KSL L L+K L+RE+TP+ +LL+TA DGGKPEL GT +L ITVLDVNDNAP
Sbjct: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            F++ +Y+V LLE   NGTLV T+NA+D DEGVN ++ +SF++ +S DI  KF +D  +G
Sbjct: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           +I +   +D+EE+KSYEIQV+A DKG+PPMS+HC VL++++D+NDN PEL + SL LP+ 
Sbjct: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           ED+PLSTVIALI+VSDRDSG NGQVTCSL PHVPFKLVSTFKNYYSLVLDS LDRES+S 
Sbjct: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATA VSVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERRVGERALS+YVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALL PRVGG  GAVSELVPR VGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQP  GGARIPFRVGLYTGEISTTR LDE D  R+RLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPKASS+AS G  GPEAALVDVNVYLI+AICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCS PPTEG   PGKPTLVCSSA+GSWS SQQR+QRVCS EG PKTDLMAFSP L P  
Sbjct: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780

Query: 781 NTSERNEQPEANLDLS 796
            + +R E+ + ++DLS
Sbjct: 781 ISRDREEKQDVDVDLS 796


>gi|14165422 protocadherin alpha 8 isoform 2 precursor [Homo
           sapiens]
          Length = 814

 Score = 1219 bits (3153), Expect = 0.0
 Identities = 624/811 (76%), Positives = 694/811 (85%), Gaps = 4/811 (0%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           M +  RG LG+  LLL LLLLAAW+VGSGQLHYS+PEEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1   MDYHWRGELGSWRLLLLLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASK HRDLLEV+LQNGILFVNSRIDREELC  SAECSIHLE+I DRPLQVFHV+
Sbjct: 61  PRLFRVASKRHRDLLEVSLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V+VKD+NDNPPVFR ++Q +F+ ESR+ +SRFP+EGA+DAD+GAN++LTY LS  DYF L
Sbjct: 121 VEVKDVNDNPPVFRVKDQKLFVSESRMPDSRFPLEGASDADVGANSVLTYRLSSHDYFML 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           DV + ++ +K + L LRK LDRE+ P  HL LTATDGGKPEL GTV+LL+TVLDVNDNAP
Sbjct: 181 DVNSKNDENKLVELVLRKSLDREDAPAHHLFLTATDGGKPELTGTVQLLVTVLDVNDNAP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            F+Q+ Y V + E   NGT V  LNASD DEG NG + +SF+S +   + + F +D ++G
Sbjct: 241 TFEQSEYEVRIFENADNGTTVIKLNASDPDEGANGAISYSFNSLVETMVIDHFSIDRNTG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           EI +   LD+E+   Y+I + A DKG PPM+ HC VLV++LD NDN PE+A+TSL LP+R
Sbjct: 301 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           EDA   TVIALI+V+D DSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRE +S 
Sbjct: 361 EDAQFGTVIALISVNDLDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRERVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATA +SVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERRVGER+LS+Y+SVH ESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERSLSSYISVHTESGKVYALQPLDHEELELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALL PRVGGT GA S+LVPR VGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLEPRVGGTGGAASKLVPRSVGAGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQPAA   RIPFRVGLYTGEISTTRVLDEAD  R+RLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQPAASSPRIPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPKASSR S GV GPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRQSAGVLGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCS  PTEG    GKPTLVCSSA+GSWS SQQ+ QRVCS EGPPKTDLMAFSP L P L
Sbjct: 721 LRCSALPTEGGCRAGKPTLVCSSAVGSWSYSQQQPQRVCSGEGPPKTDLMAFSPCLPPDL 780

Query: 781 NTSERNEQPEANLDLSGNVSP----TFEFWL 807
            + +  E+ + N+D    VSP    T +F+L
Sbjct: 781 GSVDVGEEQDLNVDHGLKVSPFKFRTHKFYL 811


>gi|9256596 protocadherin alpha 8 isoform 1 precursor [Homo sapiens]
          Length = 950

 Score = 1215 bits (3143), Expect = 0.0
 Identities = 618/794 (77%), Positives = 686/794 (86%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           M +  RG LG+  LLL LLLLAAW+VGSGQLHYS+PEEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1   MDYHWRGELGSWRLLLLLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASK HRDLLEV+LQNGILFVNSRIDREELC  SAECSIHLE+I DRPLQVFHV+
Sbjct: 61  PRLFRVASKRHRDLLEVSLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V+VKD+NDNPPVFR ++Q +F+ ESR+ +SRFP+EGA+DAD+GAN++LTY LS  DYF L
Sbjct: 121 VEVKDVNDNPPVFRVKDQKLFVSESRMPDSRFPLEGASDADVGANSVLTYRLSSHDYFML 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           DV + ++ +K + L LRK LDRE+ P  HL LTATDGGKPEL GTV+LL+TVLDVNDNAP
Sbjct: 181 DVNSKNDENKLVELVLRKSLDREDAPAHHLFLTATDGGKPELTGTVQLLVTVLDVNDNAP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            F+Q+ Y V + E   NGT V  LNASD DEG NG + +SF+S +   + + F +D ++G
Sbjct: 241 TFEQSEYEVRIFENADNGTTVIKLNASDPDEGANGAISYSFNSLVETMVIDHFSIDRNTG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           EI +   LD+E+   Y+I + A DKG PPM+ HC VLV++LD NDN PE+A+TSL LP+R
Sbjct: 301 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           EDA   TVIALI+V+D DSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRE +S 
Sbjct: 361 EDAQFGTVIALISVNDLDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRERVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATA +SVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERRVGER+LS+Y+SVH ESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERSLSSYISVHTESGKVYALQPLDHEELELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALL PRVGGT GA S+LVPR VGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLEPRVGGTGGAASKLVPRSVGAGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQPAA   RIPFRVGLYTGEISTTRVLDEAD  R+RLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQPAASSPRIPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPKASSR S GV GPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRQSAGVLGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCS  PTEG    GKPTLVCSSA+GSWS SQQ+ QRVCS EGPPKTDLMAFSP L P L
Sbjct: 721 LRCSALPTEGGCRAGKPTLVCSSAVGSWSYSQQQPQRVCSGEGPPKTDLMAFSPCLPPDL 780

Query: 781 NTSERNEQPEANLD 794
            + +  E+ + N+D
Sbjct: 781 GSVDVGEEQDLNVD 794


>gi|9256588 protocadherin alpha 4 isoform 1 precursor [Homo sapiens]
          Length = 947

 Score = 1211 bits (3132), Expect = 0.0
 Identities = 624/805 (77%), Positives = 686/805 (85%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           M FS   G  +R LLL LLLLAAWE G+GQLHYS+ EEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1   MEFSWGSGQESRRLLLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASK    LLEVNLQNGILFVNSRIDREELC+ SAECSIHLE+I DRPLQVFHV+
Sbjct: 61  PRLFRVASKGRGGLLEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVD 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V+V+DINDNPPVF   ++ + I ESR L+SRFP+EGA+DADIG NALLTY LSP++YFSL
Sbjct: 121 VEVRDINDNPPVFPATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           +    DEL K L L LRK LDREE PE+ L+LTATDGGKPEL GTV+LLITVLD NDNAP
Sbjct: 181 EKPPDDELVKGLGLILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            FD+ +Y+V LLE   NGTLV  LNASD DEG+NG++V+SF + IS +++ KF +D  +G
Sbjct: 241 AFDRTIYKVRLLENVPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           +I +   +D+EE+KSYEI V+ +DKG  P+S HC+V+V+V D NDN P+L   SL LPIR
Sbjct: 301 QIIVKGYIDFEESKSYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIR 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           EDAPL TVIALI+VSD+D G NG VTCSL  HVPFKLVSTFKNYYSLVLDSALDRES+S 
Sbjct: 361 EDAPLGTVIALISVSDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATA VSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA 
Sbjct: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERRVGERALS+YVSVHAESGKVYALQPLDHEELELLQFQV+ARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALLAPR GGT GAVSELVP  VG GHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQP  GGARIPFRVGLYTGEISTTR LDE D  R+RLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPKASSRA VG  GP+AALVDVNVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCS  PTEGA  PGKPTLVCSSA+GSWS SQQRR RVCS EGPPKTDLMAFSP L  S 
Sbjct: 721 LRCSALPTEGACAPGKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSLPDSR 780

Query: 781 NTSERNEQPEANLDLSGNVSPTFEF 805
           +  ++ +  E +       +P + +
Sbjct: 781 DREDQLQTTEESFAKPRQPNPDWRY 805


>gi|14165413 protocadherin alpha 4 isoform 2 precursor [Homo
           sapiens]
          Length = 798

 Score = 1210 bits (3130), Expect = 0.0
 Identities = 623/790 (78%), Positives = 681/790 (86%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           M FS   G  +R LLL LLLLAAWE G+GQLHYS+ EEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1   MEFSWGSGQESRRLLLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASK    LLEVNLQNGILFVNSRIDREELC+ SAECSIHLE+I DRPLQVFHV+
Sbjct: 61  PRLFRVASKGRGGLLEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVD 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V+V+DINDNPPVF   ++ + I ESR L+SRFP+EGA+DADIG NALLTY LSP++YFSL
Sbjct: 121 VEVRDINDNPPVFPATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           +    DEL K L L LRK LDREE PE+ L+LTATDGGKPEL GTV+LLITVLD NDNAP
Sbjct: 181 EKPPDDELVKGLGLILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            FD+ +Y+V LLE   NGTLV  LNASD DEG+NG++V+SF + IS +++ KF +D  +G
Sbjct: 241 AFDRTIYKVRLLENVPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           +I +   +D+EE+KSYEI V+ +DKG  P+S HC+V+V+V D NDN P+L   SL LPIR
Sbjct: 301 QIIVKGYIDFEESKSYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIR 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           EDAPL TVIALI+VSD+D G NG VTCSL  HVPFKLVSTFKNYYSLVLDSALDRES+S 
Sbjct: 361 EDAPLGTVIALISVSDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATA VSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA 
Sbjct: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERRVGERALS+YVSVHAESGKVYALQPLDHEELELLQFQV+ARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALLAPR GGT GAVSELVP  VG GHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQP  GGARIPFRVGLYTGEISTTR LDE D  R+RLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPKASSRA VG  GP+AALVDVNVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCS  PTEGA  PGKPTLVCSSA+GSWS SQQRR RVCS EGPPKTDLMAFSP L  S 
Sbjct: 721 LRCSALPTEGACAPGKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSLPDSR 780

Query: 781 NTSERNEQPE 790
           +  ++ +  E
Sbjct: 781 DREDQLQTTE 790


>gi|14165390 protocadherin alpha 6 isoform 2 precursor [Homo
           sapiens]
          Length = 803

 Score = 1206 bits (3119), Expect = 0.0
 Identities = 619/800 (77%), Positives = 684/800 (85%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           MVF+    LG + LLL LLLLAAW+VGSGQLHYS+PEEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1   MVFTPEDRLGKQCLLLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFR+ASK   DLLEVNLQNGILFVNSRIDREELC  SAECSIHLE+I DRPLQVFHV+
Sbjct: 61  PRLFRMASKDREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V+V+DINDNPP+F   EQ + I ESRL +S FP+EGA+DAD+G+N++LTY LS S+YF L
Sbjct: 121 VEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           DV+ + + +K + L L+K LDREE P  +L LTATDGGKPEL GTV+LL+TVLDVNDNAP
Sbjct: 181 DVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            F+Q+ Y V + E   NGT V  LNASD DEG NG + +SF+S ++  + + F +D ++G
Sbjct: 241 TFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           EI +   LD+E+   Y+I + A DKG PPM+ HC VLV++LD NDN PE+A+TSL LP+R
Sbjct: 301 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           EDA   TVIALI+V+D DSGANGQV CSL PHVPFKLVSTFKNYYSLVLDSALDRES+S 
Sbjct: 361 EDAQFGTVIALISVNDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATA +SVEVAD+NDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERRVGERALS+Y+SVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGT GAVSELVPR +GAG VVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVSELVPRSLGAGQVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQP A  AR PFRVGLYTGEISTTRVLDEAD  R+RLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQPPASSARFPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPKASSRASVG AGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRASVGAAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCS PPTEGA    KPTLVCSSA+GSWS SQQRRQRVCS EGPPK DLMAFSP LSP  
Sbjct: 721 LRCSAPPTEGACTADKPTLVCSSAVGSWSYSQQRRQRVCSGEGPPKMDLMAFSPSLSPCP 780

Query: 781 NTSERNEQPEANLDLSGNVS 800
               + E  + N D    VS
Sbjct: 781 IMMGKAENQDLNEDHDAKVS 800


>gi|9256592 protocadherin alpha 6 isoform 1 precursor [Homo sapiens]
          Length = 950

 Score = 1204 bits (3114), Expect = 0.0
 Identities = 617/794 (77%), Positives = 682/794 (85%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           MVF+    LG + LLL LLLLAAW+VGSGQLHYS+PEEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1   MVFTPEDRLGKQCLLLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFR+ASK   DLLEVNLQNGILFVNSRIDREELC  SAECSIHLE+I DRPLQVFHV+
Sbjct: 61  PRLFRMASKDREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V+V+DINDNPP+F   EQ + I ESRL +S FP+EGA+DAD+G+N++LTY LS S+YF L
Sbjct: 121 VEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           DV+ + + +K + L L+K LDREE P  +L LTATDGGKPEL GTV+LL+TVLDVNDNAP
Sbjct: 181 DVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            F+Q+ Y V + E   NGT V  LNASD DEG NG + +SF+S ++  + + F +D ++G
Sbjct: 241 TFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           EI +   LD+E+   Y+I + A DKG PPM+ HC VLV++LD NDN PE+A+TSL LP+R
Sbjct: 301 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           EDA   TVIALI+V+D DSGANGQV CSL PHVPFKLVSTFKNYYSLVLDSALDRES+S 
Sbjct: 361 EDAQFGTVIALISVNDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATA +SVEVAD+NDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERRVGERALS+Y+SVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGT GAVSELVPR +GAG VVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVSELVPRSLGAGQVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQP A  AR PFRVGLYTGEISTTRVLDEAD  R+RLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQPPASSARFPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPKASSRASVG AGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRASVGAAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCS PPTEGA    KPTLVCSSA+GSWS SQQRRQRVCS EGPPK DLMAFSP LSP  
Sbjct: 721 LRCSAPPTEGACTADKPTLVCSSAVGSWSYSQQRRQRVCSGEGPPKMDLMAFSPSLSPCP 780

Query: 781 NTSERNEQPEANLD 794
               + E  + N D
Sbjct: 781 IMMGKAENQDLNED 794


>gi|14165397 protocadherin alpha 13 isoform 2 precursor [Homo
           sapiens]
          Length = 807

 Score = 1201 bits (3108), Expect = 0.0
 Identities = 622/804 (77%), Positives = 683/804 (84%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           M+ S +GG   R LLLWLL+LAAWE GSGQLHYS+PEEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1   MLSSWQGGPRPRQLLLWLLILAAWETGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASK H DLLEVNLQNGILFVNSRIDREELC  SAECSIHLE+I DRPLQVFHVE
Sbjct: 61  PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           VKV+DINDNPP+F   ++ I I ESR   +RFP++GA+DADIG N+ LTY L P+DYF+L
Sbjct: 121 VKVRDINDNPPIFPESKKRIIIAESRPPETRFPLDGASDADIGVNSALTYRLDPNDYFTL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           D + S E   SL L LRK LDREE  E  LLLTA+DGGKPEL GTV+LLIT+LDVNDNAP
Sbjct: 181 DAQNSLEQMSSLSLVLRKTLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVNDNAP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            F Q+VY+V +LE   NGTLV  LNA+D D+G NG++V+SF   +   +   F ++ ++G
Sbjct: 241 EFYQSVYKVTVLENAFNGTLVIKLNATDPDDGTNGDIVYSFRRPVWPAVVYAFTINPNNG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           EIR   KLD+EE K YEI V+AVDKG+ PM+ HC +LV+VLDVNDNAPE+ +TSL LPIR
Sbjct: 301 EIRTKGKLDFEEKKLYEISVEAVDKGNIPMAGHCTLLVEVLDVNDNAPEVTITSLSLPIR 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           ED   S +IALI+VSDRDSG+NGQVTC+L PHVPFKLVST+KNYYSLVLDSALDRES+S 
Sbjct: 361 EDTQPSAIIALISVSDRDSGSNGQVTCTLTPHVPFKLVSTYKNYYSLVLDSALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATA VSV VADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA+
Sbjct: 421 YELVVTARDGGSPSLWATASVSVGVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAQ 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERRVGERALS+YVSVHAESGKVYALQPLDHEELELLQFQVSARD+
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDS 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALL P  G   G VSEL+PR VGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLTPGAGSAGGTVSELMPRSVGAGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQ AA GARIPFRVGLYTGEISTTR LDE D   +RLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAPHHRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVL+SLVESGQAP+ASSRAS G  GPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLLSLVESGQAPQASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCS PPTEGA  PGKPTLVCSSA GSWS SQQRR RVCS EGP KTDLMAFSP L P L
Sbjct: 721 LRCSAPPTEGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEGPHKTDLMAFSPSLPPCL 780

Query: 781 NTSERNEQPEANLDLSGNVSPTFE 804
            ++E   Q E + +    VS  F+
Sbjct: 781 GSAEGTGQREEDSECLKEVSLYFK 804


>gi|7662068 protocadherin alpha 9 isoform 2 precursor [Homo sapiens]
          Length = 842

 Score = 1201 bits (3106), Expect = 0.0
 Identities = 615/799 (76%), Positives = 686/799 (85%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           M++S RG    + LLL LL+LA W VGSGQLHYS+PEEA+HGTFVGR+AQDLGLELAELV
Sbjct: 1   MLYSSRGDPEGQPLLLSLLILAMWVVGSGQLHYSVPEEAEHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLF++ SK   DLLEVNLQNGILFVNSRIDREELC  SAECSIHLE+I DRPLQVFHV+
Sbjct: 61  PRLFQLDSKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V+VKDINDNPPVF   ++ +FI ESR L+SRFP+EGA+DADIG NALLTY LSP++YF L
Sbjct: 121 VEVKDINDNPPVFPATQKNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           DV  S++  K L L LRK LDREETPELHLLLTATDGGKPEL GTV+LLITVLD NDNAP
Sbjct: 181 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
           +FD+ +Y V L E  + GTLV   NASD DEG+NG++++SF S +S DI+ KF +D  SG
Sbjct: 241 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
            I +I  +D+EE+++++I V+AVDKG PP++ HC +LV+V+DVNDNAP+L + +L +P++
Sbjct: 301 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTLLVEVVDVNDNAPQLTIKTLSVPVK 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           EDA L TVIALI+V D D+ ANGQVTCSL PHVPFKLVST+KNYYSLVLD ALDRES+S 
Sbjct: 361 EDAQLGTVIALISVIDLDADANGQVTCSLTPHVPFKLVSTYKNYYSLVLDRALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQ EYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAR 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERR+GER+LS+YVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALL PR+ GT GAVSE+V R VGAG VV KVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLTPRMRGTDGAVSEMVLRSVGAGVVVGKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQP    A IPFRVGLYTGEISTTR LDE D  R RLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQPETASASIPFRVGLYTGEISTTRALDETDAPRQRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPK+SSRASVG  GPE  LVDVNVYLIIAICAVSSLLVLTLLLYT 
Sbjct: 661 ATATVLVSLVESGQAPKSSSRASVGATGPEVTLVDVNVYLIIAICAVSSLLVLTLLLYTV 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCS  PTEG   PGKPTLVCSSA+GSWS SQQRRQRVCS EG  KTDLMAFSPGLSP  
Sbjct: 721 LRCSAMPTEGECAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGLSPCA 780

Query: 781 NTSERNEQPEANLDLSGNV 799
            ++ER  +P A+ D +G V
Sbjct: 781 GSTERTGEPSASSDSTGKV 799


>gi|9256594 protocadherin alpha 7 isoform 1 precursor [Homo sapiens]
          Length = 937

 Score = 1200 bits (3105), Expect = 0.0
 Identities = 616/790 (77%), Positives = 681/790 (86%)

Query: 10  GARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELVPRLFRVASK 69
           G R LLL++++LAAWE G GQLHYS+PEEAKHG FVGR+AQDLGLELAELVPRLFR   K
Sbjct: 10  GGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCK 69

Query: 70  THRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVEVKVKDINDN 129
              DLLEVNLQNGILFVNSRIDREELC  SAECSIHLE+I +RPLQVFHV+V+VKDINDN
Sbjct: 70  FRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDN 129

Query: 130 PPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSLDVEASDELS 189
           PPVF   ++ +FI ESR L+SRFP+EGA+DADIG NALLTY LSP++YF LDV  S++  
Sbjct: 130 PPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQV 189

Query: 190 KSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAPLFDQAVYRV 249
           K L L LRK LDREETPELHLLLTATDGGKPEL GTV+LLITVLD NDNAP+FD+ +Y V
Sbjct: 190 KPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTV 249

Query: 250 HLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSGEIRLIDKLD 309
            L E  + GTLV   NASD DEG+NG++++SF S +S DI+ KF +D  SG I +I  +D
Sbjct: 250 KLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMD 309

Query: 310 YEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIREDAPLSTVI 369
           +EE+++++I V+AVDKG PP++ HC VLV+V+DVNDNAP+L +TSL LPI EDA   TVI
Sbjct: 310 FEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVI 369

Query: 370 ALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSVYELVVTARD 429
            LI+V DRD G NGQVTCSL P VPFKLVSTFKNYYSLVLDSALDRES+S YELVVTARD
Sbjct: 370 TLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429

Query: 430 GGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENAL 489
           GGSPSLWATA VSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NAL
Sbjct: 430 GGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNAL 489

Query: 490 VSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
           VSYSLVE RVGERALS+YVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV
Sbjct: 490 VSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549

Query: 550 TLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDADSGYNAWLSY 609
           TLQVFVLDENDNAPALLAPRVGGT GAV ELVPR VGAGHVVAKVRAVDADSGYNAWLSY
Sbjct: 550 TLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609

Query: 610 ELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALTATATVLVSL 669
           ELQP A GA IPFRVGLYTGEISTTR LDE D  R+RLLVLVKDHGEP+LTATATVLVSL
Sbjct: 610 ELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSL 669

Query: 670 VESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSVPPTE 729
           VESGQAPKASSRAS+G+AGPE  LVDVNVYLIIAICAVSSLLVLTLLLYTALRCS P +E
Sbjct: 670 VESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSE 729

Query: 730 GAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSLNTSERNEQP 789
           GA    KPTLVCSSA+GSWS SQQRRQRVCS EGPPKTDLMAFSP L    ++++   QP
Sbjct: 730 GACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTDNPRQP 789

Query: 790 EANLDLSGNV 799
             +   S ++
Sbjct: 790 NPDWRYSASL 799


>gi|9256580 protocadherin alpha 13 isoform 1 precursor [Homo
           sapiens]
          Length = 950

 Score = 1199 bits (3103), Expect = 0.0
 Identities = 619/790 (78%), Positives = 677/790 (85%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           M+ S +GG   R LLLWLL+LAAWE GSGQLHYS+PEEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1   MLSSWQGGPRPRQLLLWLLILAAWETGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASK H DLLEVNLQNGILFVNSRIDREELC  SAECSIHLE+I DRPLQVFHVE
Sbjct: 61  PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           VKV+DINDNPP+F   ++ I I ESR   +RFP++GA+DADIG N+ LTY L P+DYF+L
Sbjct: 121 VKVRDINDNPPIFPESKKRIIIAESRPPETRFPLDGASDADIGVNSALTYRLDPNDYFTL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           D + S E   SL L LRK LDREE  E  LLLTA+DGGKPEL GTV+LLIT+LDVNDNAP
Sbjct: 181 DAQNSLEQMSSLSLVLRKTLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVNDNAP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            F Q+VY+V +LE   NGTLV  LNA+D D+G NG++V+SF   +   +   F ++ ++G
Sbjct: 241 EFYQSVYKVTVLENAFNGTLVIKLNATDPDDGTNGDIVYSFRRPVWPAVVYAFTINPNNG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           EIR   KLD+EE K YEI V+AVDKG+ PM+ HC +LV+VLDVNDNAPE+ +TSL LPIR
Sbjct: 301 EIRTKGKLDFEEKKLYEISVEAVDKGNIPMAGHCTLLVEVLDVNDNAPEVTITSLSLPIR 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           ED   S +IALI+VSDRDSG+NGQVTC+L PHVPFKLVST+KNYYSLVLDSALDRES+S 
Sbjct: 361 EDTQPSAIIALISVSDRDSGSNGQVTCTLTPHVPFKLVSTYKNYYSLVLDSALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATA VSV VADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA+
Sbjct: 421 YELVVTARDGGSPSLWATASVSVGVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAQ 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERRVGERALS+YVSVHAESGKVYALQPLDHEELELLQFQVSARD+
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDS 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALL P  G   G VSEL+PR VGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLTPGAGSAGGTVSELMPRSVGAGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQ AA GARIPFRVGLYTGEISTTR LDE D   +RLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAPHHRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVL+SLVESGQAP+ASSRAS G  GPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLLSLVESGQAPQASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCS PPTEGA  PGKPTLVCSSA GSWS SQQRR RVCS EGP KTDLMAFSP L P L
Sbjct: 721 LRCSAPPTEGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEGPHKTDLMAFSPSLPPCL 780

Query: 781 NTSERNEQPE 790
            ++E   Q E
Sbjct: 781 GSAEGTGQRE 790


>gi|14165425 protocadherin alpha 9 isoform 1 precursor [Homo
           sapiens]
          Length = 950

 Score = 1199 bits (3102), Expect = 0.0
 Identities = 614/797 (77%), Positives = 685/797 (85%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           M++S RG    + LLL LL+LA W VGSGQLHYS+PEEA+HGTFVGR+AQDLGLELAELV
Sbjct: 1   MLYSSRGDPEGQPLLLSLLILAMWVVGSGQLHYSVPEEAEHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLF++ SK   DLLEVNLQNGILFVNSRIDREELC  SAECSIHLE+I DRPLQVFHV+
Sbjct: 61  PRLFQLDSKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V+VKDINDNPPVF   ++ +FI ESR L+SRFP+EGA+DADIG NALLTY LSP++YF L
Sbjct: 121 VEVKDINDNPPVFPATQKNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           DV  S++  K L L LRK LDREETPELHLLLTATDGGKPEL GTV+LLITVLD NDNAP
Sbjct: 181 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
           +FD+ +Y V L E  + GTLV   NASD DEG+NG++++SF S +S DI+ KF +D  SG
Sbjct: 241 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
            I +I  +D+EE+++++I V+AVDKG PP++ HC +LV+V+DVNDNAP+L + +L +P++
Sbjct: 301 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTLLVEVVDVNDNAPQLTIKTLSVPVK 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           EDA L TVIALI+V D D+ ANGQVTCSL PHVPFKLVST+KNYYSLVLD ALDRES+S 
Sbjct: 361 EDAQLGTVIALISVIDLDADANGQVTCSLTPHVPFKLVSTYKNYYSLVLDRALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQ EYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAR 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQENALVSYSLVERR+GER+LS+YVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALL PR+ GT GAVSE+V R VGAG VV KVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLTPRMRGTDGAVSEMVLRSVGAGVVVGKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQP    A IPFRVGLYTGEISTTR LDE D  R RLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQPETASASIPFRVGLYTGEISTTRALDETDAPRQRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPK+SSRASVG  GPE  LVDVNVYLIIAICAVSSLLVLTLLLYT 
Sbjct: 661 ATATVLVSLVESGQAPKSSSRASVGATGPEVTLVDVNVYLIIAICAVSSLLVLTLLLYTV 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
           LRCS  PTEG   PGKPTLVCSSA+GSWS SQQRRQRVCS EG  KTDLMAFSPGLSP  
Sbjct: 721 LRCSAMPTEGECAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGLSPCA 780

Query: 781 NTSERNEQPEANLDLSG 797
            ++ER  +P A+ D +G
Sbjct: 781 GSTERTGEPSASSDSTG 797


>gi|14165387 protocadherin alpha 11 isoform 2 precursor [Homo
           sapiens]
          Length = 810

 Score = 1198 bits (3100), Expect = 0.0
 Identities = 624/796 (78%), Positives = 679/796 (85%), Gaps = 1/796 (0%)

Query: 5   RRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELVPRLF 64
           +R GLG   L LWLLLL  WEVGSGQLHYS+ EEAKHGTFVGR+AQDLGLELAELV RLF
Sbjct: 5   QRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVQRLF 64

Query: 65  RVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVEVKVK 124
           RVASKTH DLLEVNLQNGILFVNSRIDREELC  SAECSIHLE+I DRPLQVFHV V+VK
Sbjct: 65  RVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVNVEVK 124

Query: 125 DINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSLDVEA 184
           DINDNPPVF  REQ + I ES+  +SRFP+EGA+DADI  NALLTY LS ++YFSLD   
Sbjct: 125 DINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSLDSPT 184

Query: 185 SDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAPLFDQ 244
           + +  K L L L+K LDRE+TPEL+LLLTATDGGKPEL GTV LL+ VLDVNDN P FD+
Sbjct: 185 NGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDPEFDK 244

Query: 245 AVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSGEIRL 304
           + Y+V L+E  A  TLV  LNA+D DEGVNGEV +S  S I  + +  F +D ++GE+R+
Sbjct: 245 SEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNGEVRV 303

Query: 305 IDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIREDAP 364
              LDYEE K Y+I+V+A DKG+PPM+ HC V V++LD NDN+PE+AVTSL LP+REDA 
Sbjct: 304 NGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVREDAQ 363

Query: 365 LSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSVYELV 424
            STVIALI+VSDRDSG NGQVTCSL PHVPFKLVSTFKNYYSLVLDSALDRE++  YELV
Sbjct: 364 PSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAYELV 423

Query: 425 VTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADA 484
           VTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADA
Sbjct: 424 VTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADA 483

Query: 485 QENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPP 544
           QENALVSYSLVERR+G+RALS+YVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPP
Sbjct: 484 QENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPP 543

Query: 545 LGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDADSGYN 604
           L SNVTLQVFVLDENDNAPALLA + G   GAV++LVPR VGAGHVVAKVRAVDADSGYN
Sbjct: 544 LSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADSGYN 603

Query: 605 AWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALTATAT 664
           AWLSYELQPAAGG+RIPFRVGLYTGEISTTR LDEAD  R+RLLVLVKDHGEPALTATAT
Sbjct: 604 AWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATAT 663

Query: 665 VLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCS 724
           VLVSLVESGQAPKASSR   G A PEAALVDVNVYLIIAIC VSSLLVLTLLLYTAL  S
Sbjct: 664 VLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTALWWS 723

Query: 725 VPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSLNTSE 784
             PTEGA  PGKPTLVCS A+GSWS SQQRRQRVCS EGPPKTDLMAFSP L   LN  E
Sbjct: 724 ATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLNKEE 783

Query: 785 RNEQPEANLDLSGNVS 800
             E+ E   +  G VS
Sbjct: 784 EGERQEPGSNHPGQVS 799


>gi|14165419 protocadherin alpha 7 isoform 2 precursor [Homo
           sapiens]
          Length = 789

 Score = 1196 bits (3094), Expect = 0.0
 Identities = 613/767 (79%), Positives = 671/767 (87%)

Query: 10  GARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELVPRLFRVASK 69
           G R LLL++++LAAWE G GQLHYS+PEEAKHG FVGR+AQDLGLELAELVPRLFR   K
Sbjct: 10  GGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCK 69

Query: 70  THRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVEVKVKDINDN 129
              DLLEVNLQNGILFVNSRIDREELC  SAECSIHLE+I +RPLQVFHV+V+VKDINDN
Sbjct: 70  FRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDN 129

Query: 130 PPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSLDVEASDELS 189
           PPVF   ++ +FI ESR L+SRFP+EGA+DADIG NALLTY LSP++YF LDV  S++  
Sbjct: 130 PPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQV 189

Query: 190 KSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAPLFDQAVYRV 249
           K L L LRK LDREETPELHLLLTATDGGKPEL GTV+LLITVLD NDNAP+FD+ +Y V
Sbjct: 190 KPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTV 249

Query: 250 HLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSGEIRLIDKLD 309
            L E  + GTLV   NASD DEG+NG++++SF S +S DI+ KF +D  SG I +I  +D
Sbjct: 250 KLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMD 309

Query: 310 YEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIREDAPLSTVI 369
           +EE+++++I V+AVDKG PP++ HC VLV+V+DVNDNAP+L +TSL LPI EDA   TVI
Sbjct: 310 FEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVI 369

Query: 370 ALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSVYELVVTARD 429
            LI+V DRD G NGQVTCSL P VPFKLVSTFKNYYSLVLDSALDRES+S YELVVTARD
Sbjct: 370 TLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429

Query: 430 GGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENAL 489
           GGSPSLWATA VSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NAL
Sbjct: 430 GGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNAL 489

Query: 490 VSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
           VSYSLVE RVGERALS+YVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV
Sbjct: 490 VSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549

Query: 550 TLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDADSGYNAWLSY 609
           TLQVFVLDENDNAPALLAPRVGGT GAV ELVPR VGAGHVVAKVRAVDADSGYNAWLSY
Sbjct: 550 TLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609

Query: 610 ELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALTATATVLVSL 669
           ELQP A GA IPFRVGLYTGEISTTR LDE D  R+RLLVLVKDHGEP+LTATATVLVSL
Sbjct: 610 ELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSL 669

Query: 670 VESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSVPPTE 729
           VESGQAPKASSRAS+G+AGPE  LVDVNVYLIIAICAVSSLLVLTLLLYTALRCS P +E
Sbjct: 670 VESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSE 729

Query: 730 GAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGL 776
           GA    KPTLVCSSA+GSWS SQQRRQRVCS EGPPKTDLMAFSP L
Sbjct: 730 GACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSL 776


>gi|9256576 protocadherin alpha 11 isoform 1 precursor [Homo
           sapiens]
          Length = 949

 Score = 1195 bits (3092), Expect = 0.0
 Identities = 621/786 (79%), Positives = 675/786 (85%), Gaps = 1/786 (0%)

Query: 5   RRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELVPRLF 64
           +R GLG   L LWLLLL  WEVGSGQLHYS+ EEAKHGTFVGR+AQDLGLELAELV RLF
Sbjct: 5   QRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVQRLF 64

Query: 65  RVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVEVKVK 124
           RVASKTH DLLEVNLQNGILFVNSRIDREELC  SAECSIHLE+I DRPLQVFHV V+VK
Sbjct: 65  RVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVNVEVK 124

Query: 125 DINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSLDVEA 184
           DINDNPPVF  REQ + I ES+  +SRFP+EGA+DADI  NALLTY LS ++YFSLD   
Sbjct: 125 DINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSLDSPT 184

Query: 185 SDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAPLFDQ 244
           + +  K L L L+K LDRE+TPEL+LLLTATDGGKPEL GTV LL+ VLDVNDN P FD+
Sbjct: 185 NGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDPEFDK 244

Query: 245 AVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSGEIRL 304
           + Y+V L+E  A  TLV  LNA+D DEGVNGEV +S  S I  + +  F +D ++GE+R+
Sbjct: 245 SEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNGEVRV 303

Query: 305 IDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIREDAP 364
              LDYEE K Y+I+V+A DKG+PPM+ HC V V++LD NDN+PE+AVTSL LP+REDA 
Sbjct: 304 NGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVREDAQ 363

Query: 365 LSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSVYELV 424
            STVIALI+VSDRDSG NGQVTCSL PHVPFKLVSTFKNYYSLVLDSALDRE++  YELV
Sbjct: 364 PSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAYELV 423

Query: 425 VTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADA 484
           VTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADA
Sbjct: 424 VTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADA 483

Query: 485 QENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPP 544
           QENALVSYSLVERR+G+RALS+YVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPP
Sbjct: 484 QENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPP 543

Query: 545 LGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDADSGYN 604
           L SNVTLQVFVLDENDNAPALLA + G   GAV++LVPR VGAGHVVAKVRAVDADSGYN
Sbjct: 544 LSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADSGYN 603

Query: 605 AWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALTATAT 664
           AWLSYELQPAAGG+RIPFRVGLYTGEISTTR LDEAD  R+RLLVLVKDHGEPALTATAT
Sbjct: 604 AWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATAT 663

Query: 665 VLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCS 724
           VLVSLVESGQAPKASSR   G A PEAALVDVNVYLIIAIC VSSLLVLTLLLYTAL  S
Sbjct: 664 VLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTALWWS 723

Query: 725 VPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSLNTSE 784
             PTEGA  PGKPTLVCS A+GSWS SQQRRQRVCS EGPPKTDLMAFSP L   LN  E
Sbjct: 724 ATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLNKEE 783

Query: 785 RNEQPE 790
             E+ E
Sbjct: 784 EGERQE 789


>gi|9256578 protocadherin alpha 12 isoform 1 precursor [Homo
           sapiens]
          Length = 941

 Score = 1163 bits (3008), Expect = 0.0
 Identities = 608/803 (75%), Positives = 669/803 (83%), Gaps = 4/803 (0%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           MV     G G++ LLL LLLLAAWEVGSGQLHYS+ EEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1   MVIIGPRGPGSQRLLLSLLLLAAWEVGSGQLHYSVYEEAKHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASK H DLLEVNLQNGILFVNSRIDRE+LC  SAECSIHLE+I DRPLQVFHV+
Sbjct: 61  PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREKLCGRSAECSIHLEVIVDRPLQVFHVD 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V+VKDINDNPPVFR REQ + + ES  L+S FP+EGA+DADIG N+LLTY LS ++ F L
Sbjct: 121 VEVKDINDNPPVFREREQKVPVSESAPLDSHFPLEGASDADIGVNSLLTYALSLNENFEL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
            ++   + S    L LRK LDRE+TP+L+LLL   DGGKPEL G+V++ ITVLDVNDN P
Sbjct: 181 KIKTKKDKSILPELVLRKLLDREQTPKLNLLLMVIDGGKPELTGSVQIQITVLDVNDNGP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            FD+  Y+V L E   N T V  LNASD DEG+NGE+ +     +    +  F ++  +G
Sbjct: 241 AFDKPSYKVVLSENVQNDTRVIQLNASDPDEGLNGEISYGIKMILPVSEKCMFSINPDTG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           EIR+  +LD+EE  +YEIQV A+DKG P M+ H  VLV+VLDVNDN PE+ VTSL LP++
Sbjct: 301 EIRIYGELDFEENNAYEIQVNAIDKGIPSMAGHSMVLVEVLDVNDNVPEVMVTSLSLPVQ 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           EDA + TVIALI+VSDRDSGANGQV CSL PHVPFKLVST+KNYYSLVLDSALDRES+S 
Sbjct: 361 EDAQVGTVIALISVSDRDSGANGQVICSLTPHVPFKLVSTYKNYYSLVLDSALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA 
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQ+NALVSYSLVERRVGE ALS+YVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQKNALVSYSLVERRVGEHALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALLA   G   GAVSELVPR VGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLATPAGSAGGAVSELVPRSVGAGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQPAA GA IPF VGLYTGEISTTR+LDEAD  R+RLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQPAAVGAHIPFHVGLYTGEISTTRILDEADAPRHRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           +TATVLVSLVE+GQAPK SSRASVG   PEAALVD+NVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 661 STATVLVSLVENGQAPKTSSRASVGAVDPEAALVDINVYLIIAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPS- 779
           LRCS PPT     PGKPTLVCSSA+GSWS SQQRRQRVCS+E PPKTDLMAFSP L  S 
Sbjct: 721 LRCSAPPTVSRCAPGKPTLVCSSAVGSWSYSQQRRQRVCSAESPPKTDLMAFSPSLQLSR 780

Query: 780 ---LNTSERNEQPEANLDLSGNV 799
              LN      QP  +   S ++
Sbjct: 781 EDCLNPPSEPRQPNPDWRYSASL 803


>gi|14165392 protocadherin alpha 12 isoform 2 precursor [Homo
           sapiens]
          Length = 792

 Score = 1161 bits (3004), Expect = 0.0
 Identities = 603/779 (77%), Positives = 661/779 (84%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           MV     G G++ LLL LLLLAAWEVGSGQLHYS+ EEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1   MVIIGPRGPGSQRLLLSLLLLAAWEVGSGQLHYSVYEEAKHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASK H DLLEVNLQNGILFVNSRIDRE+LC  SAECSIHLE+I DRPLQVFHV+
Sbjct: 61  PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREKLCGRSAECSIHLEVIVDRPLQVFHVD 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V+VKDINDNPPVFR REQ + + ES  L+S FP+EGA+DADIG N+LLTY LS ++ F L
Sbjct: 121 VEVKDINDNPPVFREREQKVPVSESAPLDSHFPLEGASDADIGVNSLLTYALSLNENFEL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
            ++   + S    L LRK LDRE+TP+L+LLL   DGGKPEL G+V++ ITVLDVNDN P
Sbjct: 181 KIKTKKDKSILPELVLRKLLDREQTPKLNLLLMVIDGGKPELTGSVQIQITVLDVNDNGP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            FD+  Y+V L E   N T V  LNASD DEG+NGE+ +     +    +  F ++  +G
Sbjct: 241 AFDKPSYKVVLSENVQNDTRVIQLNASDPDEGLNGEISYGIKMILPVSEKCMFSINPDTG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           EIR+  +LD+EE  +YEIQV A+DKG P M+ H  VLV+VLDVNDN PE+ VTSL LP++
Sbjct: 301 EIRIYGELDFEENNAYEIQVNAIDKGIPSMAGHSMVLVEVLDVNDNVPEVMVTSLSLPVQ 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           EDA + TVIALI+VSDRDSGANGQV CSL PHVPFKLVST+KNYYSLVLDSALDRES+S 
Sbjct: 361 EDAQVGTVIALISVSDRDSGANGQVICSLTPHVPFKLVSTYKNYYSLVLDSALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA 
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQ+NALVSYSLVERRVGE ALS+YVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQKNALVSYSLVERRVGEHALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALLA   G   GAVSELVPR VGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLATPAGSAGGAVSELVPRSVGAGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
           SGYNAWLSYELQPAA GA IPF VGLYTGEISTTR+LDEAD  R+RLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQPAAVGAHIPFHVGLYTGEISTTRILDEADAPRHRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           +TATVLVSLVE+GQAPK SSRASVG   PEAALVD+NVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 661 STATVLVSLVENGQAPKTSSRASVGAVDPEAALVDINVYLIIAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPS 779
           LRCS PPT     PGKPTLVCSSA+GSWS SQQRRQRVCS+E PPKTDLMAFSP L  S
Sbjct: 721 LRCSAPPTVSRCAPGKPTLVCSSAVGSWSYSQQRRQRVCSAESPPKTDLMAFSPSLQLS 779


>gi|14165381 protocadherin alpha 10 isoform 2 precursor [Homo
           sapiens]
          Length = 844

 Score = 1158 bits (2996), Expect = 0.0
 Identities = 604/775 (77%), Positives = 659/775 (85%), Gaps = 1/775 (0%)

Query: 4   SRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELVPRL 63
           SR   LG + LLL LLLLAAWEVGSGQLHYS+ EEA+HGTFVGR+AQDLGLELAELV RL
Sbjct: 3   SRCSCLGVQCLLLSLLLLAAWEVGSGQLHYSVYEEARHGTFVGRIAQDLGLELAELVQRL 62

Query: 64  FRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVEVKV 123
           FRVASK H DLLEVNLQNGILFVNSRIDREELC  S ECSIHLE+I DRPLQVFHV+V+V
Sbjct: 63  FRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVDVEV 122

Query: 124 KDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSLDVE 183
           KDINDNPP F   EQ + IPESRLL+SRFP+EGA+DAD+G NALLTY LSP++YF LD+ 
Sbjct: 123 KDINDNPPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVLDII 182

Query: 184 ASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAPLFD 243
              +  K   L LRK LDREE P+L LLLTATDGGKPE  G+V LLI VLD NDNAP+FD
Sbjct: 183 NKKDKDKFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAPIFD 242

Query: 244 QAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSGEIR 303
           + VY V + E   N TLV  LNASD+DEG+N E+++SF S +   I+ KF ++  +GEI+
Sbjct: 243 RPVYEVKMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTGEIK 302

Query: 304 LIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIREDA 363
           + D +D+E++ +YEI V   DKG+PPM  HC VLV++LD NDN+PE+ VTSL LP++EDA
Sbjct: 303 VNDAIDFEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVKEDA 362

Query: 364 PLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSVYEL 423
            + TVIALI+VSD DSGANGQVTCSL PHVPFKLVST+KNYYSLVLDSALDRE +S YEL
Sbjct: 363 QVGTVIALISVSDHDSGANGQVTCSLTPHVPFKLVSTYKNYYSLVLDSALDRERVSAYEL 422

Query: 424 VVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDAD 483
           VVTARDGGSP LWATA VSVEVADVNDNAPAFAQ EYTVFVKENNPPGCHIFTVSA DAD
Sbjct: 423 VVTARDGGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAWDAD 482

Query: 484 AQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVP 543
           AQENALVSYSLVERR+GER+LS+YVSVHAESGKVYALQPLDHEELELLQFQVSARD GVP
Sbjct: 483 AQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDGGVP 542

Query: 544 PLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDADSGY 603
           PLGSN+TLQVFVLDENDNAPALLA   G   GAVSELV R V AGHVVAKVRAVDADSGY
Sbjct: 543 PLGSNLTLQVFVLDENDNAPALLASPAGSAGGAVSELVLRSVVAGHVVAKVRAVDADSGY 602

Query: 604 NAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALTATA 663
           NAWLSYELQ AA GARIPFRVGLYTGEISTTR LDE D  R RLLVLVKDHGEP+LTATA
Sbjct: 603 NAWLSYELQSAAVGARIPFRVGLYTGEISTTRALDETDSPRQRLLVLVKDHGEPSLTATA 662

Query: 664 TVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRC 723
           TVLVSLVE  QAPKASSRASVGVA PE ALVDVNVYLIIAICAVSSLLVLTLLLYTALRC
Sbjct: 663 TVLVSLVEGSQAPKASSRASVGVA-PEVALVDVNVYLIIAICAVSSLLVLTLLLYTALRC 721

Query: 724 SVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSP 778
           S  PTEGA  P KPTLVCSSA+GSWS SQQRRQRVCS EG PK DLMAFSP L P
Sbjct: 722 SAAPTEGACGPVKPTLVCSSAVGSWSYSQQRRQRVCSGEGLPKADLMAFSPSLPP 776


>gi|9256574 protocadherin alpha 10 isoform 1 precursor [Homo
           sapiens]
          Length = 948

 Score = 1158 bits (2996), Expect = 0.0
 Identities = 604/775 (77%), Positives = 659/775 (85%), Gaps = 1/775 (0%)

Query: 4   SRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELVPRL 63
           SR   LG + LLL LLLLAAWEVGSGQLHYS+ EEA+HGTFVGR+AQDLGLELAELV RL
Sbjct: 3   SRCSCLGVQCLLLSLLLLAAWEVGSGQLHYSVYEEARHGTFVGRIAQDLGLELAELVQRL 62

Query: 64  FRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVEVKV 123
           FRVASK H DLLEVNLQNGILFVNSRIDREELC  S ECSIHLE+I DRPLQVFHV+V+V
Sbjct: 63  FRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVDVEV 122

Query: 124 KDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSLDVE 183
           KDINDNPP F   EQ + IPESRLL+SRFP+EGA+DAD+G NALLTY LSP++YF LD+ 
Sbjct: 123 KDINDNPPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVLDII 182

Query: 184 ASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAPLFD 243
              +  K   L LRK LDREE P+L LLLTATDGGKPE  G+V LLI VLD NDNAP+FD
Sbjct: 183 NKKDKDKFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAPIFD 242

Query: 244 QAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSGEIR 303
           + VY V + E   N TLV  LNASD+DEG+N E+++SF S +   I+ KF ++  +GEI+
Sbjct: 243 RPVYEVKMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTGEIK 302

Query: 304 LIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIREDA 363
           + D +D+E++ +YEI V   DKG+PPM  HC VLV++LD NDN+PE+ VTSL LP++EDA
Sbjct: 303 VNDAIDFEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVKEDA 362

Query: 364 PLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSVYEL 423
            + TVIALI+VSD DSGANGQVTCSL PHVPFKLVST+KNYYSLVLDSALDRE +S YEL
Sbjct: 363 QVGTVIALISVSDHDSGANGQVTCSLTPHVPFKLVSTYKNYYSLVLDSALDRERVSAYEL 422

Query: 424 VVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDAD 483
           VVTARDGGSP LWATA VSVEVADVNDNAPAFAQ EYTVFVKENNPPGCHIFTVSA DAD
Sbjct: 423 VVTARDGGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAWDAD 482

Query: 484 AQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVP 543
           AQENALVSYSLVERR+GER+LS+YVSVHAESGKVYALQPLDHEELELLQFQVSARD GVP
Sbjct: 483 AQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDGGVP 542

Query: 544 PLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDADSGY 603
           PLGSN+TLQVFVLDENDNAPALLA   G   GAVSELV R V AGHVVAKVRAVDADSGY
Sbjct: 543 PLGSNLTLQVFVLDENDNAPALLASPAGSAGGAVSELVLRSVVAGHVVAKVRAVDADSGY 602

Query: 604 NAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALTATA 663
           NAWLSYELQ AA GARIPFRVGLYTGEISTTR LDE D  R RLLVLVKDHGEP+LTATA
Sbjct: 603 NAWLSYELQSAAVGARIPFRVGLYTGEISTTRALDETDSPRQRLLVLVKDHGEPSLTATA 662

Query: 664 TVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRC 723
           TVLVSLVE  QAPKASSRASVGVA PE ALVDVNVYLIIAICAVSSLLVLTLLLYTALRC
Sbjct: 663 TVLVSLVEGSQAPKASSRASVGVA-PEVALVDVNVYLIIAICAVSSLLVLTLLLYTALRC 721

Query: 724 SVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSP 778
           S  PTEGA  P KPTLVCSSA+GSWS SQQRRQRVCS EG PK DLMAFSP L P
Sbjct: 722 SAAPTEGACGPVKPTLVCSSAVGSWSYSQQRRQRVCSGEGLPKADLMAFSPSLPP 776


>gi|14165402 protocadherin alpha 1 isoform 3 precursor [Homo
           sapiens]
          Length = 686

 Score = 1048 bits (2711), Expect = 0.0
 Identities = 534/534 (100%), Positives = 534/534 (100%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
Sbjct: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
Sbjct: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
Sbjct: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
Sbjct: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
           LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
Sbjct: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
Sbjct: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
Sbjct: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQ 534
           DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQ
Sbjct: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQ 534



 Score =  151 bits (382), Expect = 2e-36
 Identities = 128/423 (30%), Positives = 189/423 (44%), Gaps = 25/423 (5%)

Query: 230 ITVLDVNDNAPLFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSG--ISR 287
           + V D+NDN P+F      + + E+    +      A+DAD G N  + ++       S 
Sbjct: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180

Query: 288 DIQEKFKVDSSSGEIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNA 347
           D++   ++ S S  + L   LD EET    + + A D G P +    ++L+ VLDVNDNA
Sbjct: 181 DVEASDEL-SKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNA 239

Query: 348 PELAVTSLYLPIREDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYS- 406
           P        + + E     T++  +  SD D G NG+V  S    +   +   FK   S 
Sbjct: 240 PLFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSS 299

Query: 407 --LVLDSALDRESLSVYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFV 464
             + L   LD E    YE+ V A D GSP +    +V V+V DVNDNAP  A     + +
Sbjct: 300 GEIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPI 359

Query: 465 KENNPPGCHIFTVSARDADAQENALVSYSLVERRVGE--RALSNYVSVHAESGKVYALQP 522
           +E+ P    I  ++  D D+  N  V+ SL+     +      NY S+  +S        
Sbjct: 360 REDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSA------- 412

Query: 523 LDHEELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVP 582
           LD E L + +  V+ARD G P L +   + V V D NDNAPA   P    T+       P
Sbjct: 413 LDRESLSVYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEY--TVFVKENNPP 470

Query: 583 RLVGAGHVVAKVRAVDADSGYNAWLSYELQPAAGGARI---PFRVGLYTGEISTTRVLDE 639
                G  +  V A DAD+  NA +SY L     G R       V   +G++   + LD 
Sbjct: 471 -----GCHIFTVSARDADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDH 525

Query: 640 ADL 642
            +L
Sbjct: 526 EEL 528



 Score =  150 bits (380), Expect = 3e-36
 Identities = 118/346 (34%), Positives = 163/346 (47%), Gaps = 27/346 (7%)

Query: 336 VLVKVLDVNDNAPELAVTSLYLPIREDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPF 395
           V VKV D+NDN P        + I E   L++   +   +D D GAN  +T +L P   F
Sbjct: 119 VEVKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYF 178

Query: 396 KLVSTFKNYYS----LVLDSALDRESLSVYELVVTARDGGSPSLWATARVSVEVADVNDN 451
            L     +  S    L L   LDRE      L++TA DGG P L  T  + + V DVNDN
Sbjct: 179 SLDVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDN 238

Query: 452 APAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENALVSYSL---VERRVGERALSNYV 508
           AP F Q  Y V + E    G  + T++A DAD   N  V +S    + R + E+      
Sbjct: 239 APLFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEK-----F 293

Query: 509 SVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAP 568
            V + SG++  +  LD+EE +  + QV A D G PP+ ++  + V VLD NDNAP L   
Sbjct: 294 KVDSSSGEIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPEL--- 350

Query: 569 RVGGTIGAVSELVPRLVGAGHVVAKVRAVDADSGYNAWLSYELQPAAGGARIPFR-VGLY 627
            V      + E  P       V+A +   D DSG N  ++  L P      +PF+ V  +
Sbjct: 351 AVTSLYLPIREDAP----LSTVIALITVSDRDSGANGQVTCSLMP-----HVPFKLVSTF 401

Query: 628 TGEISTT--RVLDEADLSRYRLLVLVKDHGEPALTATATVLVSLVE 671
               S      LD   LS Y L+V  +D G P+L ATA V V + +
Sbjct: 402 KNYYSLVLDSALDRESLSVYELVVTARDGGSPSLWATARVSVEVAD 447


>gi|14165394 protocadherin alpha 6 isoform 3 precursor [Homo
           sapiens]
          Length = 686

 Score =  780 bits (2014), Expect = 0.0
 Identities = 392/534 (73%), Positives = 452/534 (84%)

Query: 1   MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
           MVF+    LG + LLL LLLLAAW+VGSGQLHYS+PEEAKHGTFVGR+AQDLGLELAELV
Sbjct: 1   MVFTPEDRLGKQCLLLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
           PRLFR+ASK   DLLEVNLQNGILFVNSRIDREELC  SAECSIHLE+I DRPLQVFHV+
Sbjct: 61  PRLFRMASKDREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD 120

Query: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
           V+V+DINDNPP+F   EQ + I ESRL +S FP+EGA+DAD+G+N++LTY LS S+YF L
Sbjct: 121 VEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGL 180

Query: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
           DV+ + + +K + L L+K LDREE P  +L LTATDGGKPEL GTV+LL+TVLDVNDNAP
Sbjct: 181 DVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAP 240

Query: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
            F+Q+ Y V + E   NGT V  LNASD DEG NG + +SF+S ++  + + F +D ++G
Sbjct: 241 TFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTG 300

Query: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
           EI +   LD+E+   Y+I + A DKG PPM+ HC VLV++LD NDN PE+A+TSL LP+R
Sbjct: 301 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR 360

Query: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
           EDA   TVIALI+V+D DSGANGQV CSL PHVPFKLVSTFKNYYSLVLDSALDRES+S 
Sbjct: 361 EDAQFGTVIALISVNDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
           YELVVTARDGGSPSLWATA +SVEVAD+NDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
Sbjct: 421 YELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480

Query: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQ 534
           DADAQENALVSYSLVERRVGERALS+Y+SVHAESGKVYALQPLDHEELELLQFQ
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQ 534



 Score =  167 bits (422), Expect = 5e-41
 Identities = 131/422 (31%), Positives = 194/422 (45%), Gaps = 23/422 (5%)

Query: 230 ITVLDVNDNAPLFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDI 289
           + V D+NDN PLF     RV + E+    ++     ASDAD G N  + +   S     +
Sbjct: 121 VEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGL 180

Query: 290 QEKFKVDSSSGEIRLIDK-LDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAP 348
             K   D +     L+ K LD EE  ++ + + A D G P ++   ++LV VLDVNDNAP
Sbjct: 181 DVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAP 240

Query: 349 ELAVTSLYLPIREDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTF---KNYY 405
               +   + I E+A   T +  +  SDRD GANG ++ S    V   ++  F   +N  
Sbjct: 241 TFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTG 300

Query: 406 SLVLDSALDRESLSVYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVK 465
            +V+   LD E  ++Y++++ A D G P +     V V + D NDN P  A    ++ V+
Sbjct: 301 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR 360

Query: 466 ENNPPGCHIFTVSARDADAQENALVSYSLVERRVGE--RALSNYVSVHAESGKVYALQPL 523
           E+   G  I  +S  D D+  N  V+ SL      +      NY S+  +S        L
Sbjct: 361 EDAQFGTVIALISVNDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSA-------L 413

Query: 524 DHEELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPR 583
           D E +   +  V+ARD G P L +  +L V V D NDNAPA   P    T+       P 
Sbjct: 414 DRESVSAYELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPEY--TVFVKENNPP- 470

Query: 584 LVGAGHVVAKVRAVDADSGYNAWLSYELQPAAGGARI---PFRVGLYTGEISTTRVLDEA 640
               G  +  V A DAD+  NA +SY L     G R       V   +G++   + LD  
Sbjct: 471 ----GCHIFTVSARDADAQENALVSYSLVERRVGERALSSYISVHAESGKVYALQPLDHE 526

Query: 641 DL 642
           +L
Sbjct: 527 EL 528



 Score =  157 bits (397), Expect = 4e-38
 Identities = 121/395 (30%), Positives = 187/395 (47%), Gaps = 24/395 (6%)

Query: 286 SRDIQEKFKVDSSSGEIRLIDKLDYEET--KSYEIQVKAVDKGSPPMSNHCKVLVKVLDV 343
           S+D ++  +V+  +G + +  ++D EE   +S E  +        P+     V V+V D+
Sbjct: 68  SKDREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVF-HVDVEVRDI 126

Query: 344 NDNAPELAVTSLYLPIREDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPF----KLVS 399
           NDN P   V    + I E     +V  L   SD D G+N  +T  L     F    K+ S
Sbjct: 127 NDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGLDVKINS 186

Query: 400 TFKNYYSLVLDSALDRESLSVYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPE 459
                  L+L  +LDRE    + L +TA DGG P L  T ++ V V DVNDNAP F Q E
Sbjct: 187 DDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAPTFEQSE 246

Query: 460 YTVFVKENNPPGCHIFTVSARDADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYA 519
           Y V + EN   G  +  ++A D D   N  +SYS     +    + ++ S+   +G++  
Sbjct: 247 YEVRIFENADNGTTVIRLNASDRDEGANGAISYSF--NSLVAAMVIDHFSIDRNTGEIVI 304

Query: 520 LQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSE 579
              LD E+  L +  + A D G PP+  + T+ V +LD+NDN P +        + ++S 
Sbjct: 305 RGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEI-------ALTSLSL 357

Query: 580 LVPRLVGAGHVVAKVRAVDADSGYNAWLSYELQPAAGGARIPFR-VGLYTGEISTT--RV 636
            V      G V+A +   D DSG N  ++  L P      +PF+ V  +    S      
Sbjct: 358 PVREDAQFGTVIALISVNDLDSGANGQVNCSLTP-----HVPFKLVSTFKNYYSLVLDSA 412

Query: 637 LDEADLSRYRLLVLVKDHGEPALTATATVLVSLVE 671
           LD   +S Y L+V  +D G P+L ATA++ V + +
Sbjct: 413 LDRESVSAYELVVTARDGGSPSLWATASLSVEVAD 447


>gi|14165383 protocadherin alpha 10 isoform 3 precursor [Homo
           sapiens]
          Length = 685

 Score =  775 bits (2001), Expect = 0.0
 Identities = 395/531 (74%), Positives = 447/531 (84%)

Query: 4   SRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELVPRL 63
           SR   LG + LLL LLLLAAWEVGSGQLHYS+ EEA+HGTFVGR+AQDLGLELAELV RL
Sbjct: 3   SRCSCLGVQCLLLSLLLLAAWEVGSGQLHYSVYEEARHGTFVGRIAQDLGLELAELVQRL 62

Query: 64  FRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVEVKV 123
           FRVASK H DLLEVNLQNGILFVNSRIDREELC  S ECSIHLE+I DRPLQVFHV+V+V
Sbjct: 63  FRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVDVEV 122

Query: 124 KDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSLDVE 183
           KDINDNPP F   EQ + IPESRLL+SRFP+EGA+DAD+G NALLTY LSP++YF LD+ 
Sbjct: 123 KDINDNPPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVLDII 182

Query: 184 ASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAPLFD 243
              +  K   L LRK LDREE P+L LLLTATDGGKPE  G+V LLI VLD NDNAP+FD
Sbjct: 183 NKKDKDKFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAPIFD 242

Query: 244 QAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSGEIR 303
           + VY V + E   N TLV  LNASD+DEG+N E+++SF S +   I+ KF ++  +GEI+
Sbjct: 243 RPVYEVKMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTGEIK 302

Query: 304 LIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIREDA 363
           + D +D+E++ +YEI V   DKG+PPM  HC VLV++LD NDN+PE+ VTSL LP++EDA
Sbjct: 303 VNDAIDFEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVKEDA 362

Query: 364 PLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSVYEL 423
            + TVIALI+VSD DSGANGQVTCSL PHVPFKLVST+KNYYSLVLDSALDRE +S YEL
Sbjct: 363 QVGTVIALISVSDHDSGANGQVTCSLTPHVPFKLVSTYKNYYSLVLDSALDRERVSAYEL 422

Query: 424 VVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDAD 483
           VVTARDGGSP LWATA VSVEVADVNDNAPAFAQ EYTVFVKENNPPGCHIFTVSA DAD
Sbjct: 423 VVTARDGGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAWDAD 482

Query: 484 AQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQ 534
           AQENALVSYSLVERR+GER+LS+YVSVHAESGKVYALQPLDHEELELLQFQ
Sbjct: 483 AQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQ 533



 Score =  142 bits (358), Expect = 1e-33
 Identities = 107/341 (31%), Positives = 159/341 (46%), Gaps = 21/341 (6%)

Query: 338 VKVLDVNDNAPELAVTSLYLPIREDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKL 397
           V+V D+NDN P  +VT   L I E   L +   L   SD D G N  +T  L P+  F L
Sbjct: 120 VEVKDINDNPPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVL 179

Query: 398 VSTFKN----YYSLVLDSALDRESLSVYELVVTARDGGSPSLWATARVSVEVADVNDNAP 453
               K     +  LVL   LDRE     +L++TA DGG P    +  + + V D NDNAP
Sbjct: 180 DIINKKDKDKFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAP 239

Query: 454 AFAQPEYTVFVKENNPPGCHIFTVSARDADAQENALVSYSLVERRVGERALSNYVSVHAE 513
            F +P Y V + EN      +  ++A D+D   N  + YS     +    +     ++  
Sbjct: 240 IFDRPVYEVKMYENQVNQTLVIRLNASDSDEGINKEMMYSFSS--LVPPTIRRKFWINER 297

Query: 514 SGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGT 573
           +G++     +D E+    +  V   D G PP+  + T+ V +LDENDN+P ++       
Sbjct: 298 TGEIKVNDAIDFEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVI------- 350

Query: 574 IGAVSELVPRLVGAGHVVAKVRAVDADSGYNAWLSYELQPAAGGARIPFR-VGLYTGEIS 632
           + ++S  V      G V+A +   D DSG N  ++  L P      +PF+ V  Y    S
Sbjct: 351 VTSLSLPVKEDAQVGTVIALISVSDHDSGANGQVTCSLTP-----HVPFKLVSTYKNYYS 405

Query: 633 TT--RVLDEADLSRYRLLVLVKDHGEPALTATATVLVSLVE 671
                 LD   +S Y L+V  +D G P L ATA+V V + +
Sbjct: 406 LVLDSALDRERVSAYELVVTARDGGSPPLWATASVSVEVAD 446



 Score =  136 bits (343), Expect = 7e-32
 Identities = 118/420 (28%), Positives = 187/420 (44%), Gaps = 19/420 (4%)

Query: 230 ITVLDVNDNAPLFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDI 289
           + V D+NDN P F     ++ + E+    +      ASDAD G N  + +         +
Sbjct: 120 VEVKDINDNPPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVL 179

Query: 290 QEKFKVDSSSGEIRLIDKL-DYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAP 348
               K D     + ++ KL D EE    ++ + A D G P  +    +L+ VLD NDNAP
Sbjct: 180 DIINKKDKDKFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAP 239

Query: 349 ELAVTSLYLPIREDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTF---KNYY 405
                   + + E+    T++  +  SD D G N ++  S    VP  +   F   +   
Sbjct: 240 IFDRPVYEVKMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTG 299

Query: 406 SLVLDSALDRESLSVYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVK 465
            + ++ A+D E  + YE+ V   D G+P +     V VE+ D NDN+P       ++ VK
Sbjct: 300 EIKVNDAIDFEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVK 359

Query: 466 ENNPPGCHIFTVSARDADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDH 525
           E+   G  I  +S  D D+  N  V+ SL    V  + +S Y + ++    +     LD 
Sbjct: 360 EDAQVGTVIALISVSDHDSGANGQVTCSLTPH-VPFKLVSTYKNYYS----LVLDSALDR 414

Query: 526 EELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLV 585
           E +   +  V+ARD G PPL +  ++ V V D NDNAPA        T+       P   
Sbjct: 415 ERVSAYELVVTARDGGSPPLWATASVSVEVADVNDNAPAFAQSEY--TVFVKENNPP--- 469

Query: 586 GAGHVVAKVRAVDADSGYNAWLSYELQPAAGGAR-IPFRVGLY--TGEISTTRVLDEADL 642
             G  +  V A DAD+  NA +SY L     G R +   V ++  +G++   + LD  +L
Sbjct: 470 --GCHIFTVSAWDADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEEL 527



 Score = 91.7 bits (226), Expect = 3e-18
 Identities = 90/313 (28%), Positives = 131/313 (41%), Gaps = 32/313 (10%)

Query: 407 LVLDSALDRESL-------SVYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPE 459
           L ++S +DRE L       S++  V+  R            V VEV D+NDN P F+  E
Sbjct: 83  LFVNSRIDREELCGRSVECSIHLEVIVDRP------LQVFHVDVEVKDINDNPPRFSVTE 136

Query: 460 YTVFVKENNPPGCHIFTVSARDADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYA 519
             + + E+           A DAD  ENAL++Y L         + N      +   V  
Sbjct: 137 QKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVLDIIN--KKDKDKFPVLV 194

Query: 520 LQPL-DHEELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAP--RVGGTIGA 576
           L+ L D EE   L+  ++A D G P    +V+L + VLD NDNAP    P   V      
Sbjct: 195 LRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAPIFDRPVYEVKMYENQ 254

Query: 577 VSELVPRLVGAGHVVAKVRAVDADSGYNAWLSYELQPAAGGA-RIPFRVGLYTGEISTTR 635
           V++ +         V ++ A D+D G N  + Y          R  F +   TGEI    
Sbjct: 255 VNQTL---------VIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTGEIKVND 305

Query: 636 VLDEADLSRYRLLVLVKDHGEPALTATATVLVSLVESGQAPKASSRASVGVAGPEAALVD 695
            +D  D + Y + V V D G P +    TVLV L++           S+ +   E    D
Sbjct: 306 AIDFEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVKE----D 361

Query: 696 VNVYLIIAICAVS 708
             V  +IA+ +VS
Sbjct: 362 AQVGTVIALISVS 374


>gi|14277677 protocadherin gamma subfamily C, 3 isoform 2 precursor
           [Homo sapiens]
          Length = 863

 Score =  592 bits (1526), Expect = e-169
 Identities = 312/698 (44%), Positives = 452/698 (64%), Gaps = 8/698 (1%)

Query: 18  LLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELVPRLFRVASKTHRDLLEV 77
           LLLL A    S  +HY IPEE + G  VG V  +LGL+L  L  R FRV S   R   EV
Sbjct: 20  LLLLGALNKASTVIHYEIPEEREKGFAVGNVVANLGLDLGSLSARRFRVVSGASRRFFEV 79

Query: 78  NLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVEVKVKDINDNPPVFRGRE 137
           N + G +FVN R+DREELC     C++ LEL+ + PL++F VEV ++DINDN P F  +E
Sbjct: 80  NRETGEMFVNDRLDREELCGTLPSCTVTLELVVENPLELFSVEVVIQDINDNNPAFPTQE 139

Query: 138 QIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSLDVEASDELSKSLWLELR 197
             + I E+    +RFP+E A D D+G+N+L TY LS ++YF+L V+  ++ +K   L L 
Sbjct: 140 MKLEISEAVAPGTRFPLESAHDPDVGSNSLQTYELSRNEYFALRVQTREDSTKYAELVLE 199

Query: 198 KYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAPLFDQAVYRVHLLETTAN 257
           + LDRE  P L L+LTA DGG P L  ++ + I VLD NDNAP+F+Q++YR  +LE   +
Sbjct: 200 RALDREREPSLQLVLTALDGGTPALSASLPIHIKVLDANDNAPVFNQSLYRARVLEDAPS 259

Query: 258 GTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSGEIRLIDKLDYEETKSYE 317
           GT V  + A+D DEG NGE+++SF S     +++ F +D  +G + +  +LD+E+TK +E
Sbjct: 260 GTRVVQVLATDLDEGPNGEIIYSFGSHNRAGVRQLFALDLVTGMLTIKGRLDFEDTKLHE 319

Query: 318 IQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIREDAPLSTVIALITVSDR 377
           I ++A DKG+ P   HCKVLV+V+DVNDNAPE+ VTS+Y P+ EDAPL TVIAL++V+D 
Sbjct: 320 IYIQAKDKGANPEGAHCKVLVEVVDVNDNAPEITVTSVYSPVPEDAPLGTVIALLSVTDL 379

Query: 378 DSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSVYELVVTARDGGSPSLWA 437
           D+G NG VTC + P +PF L S+ KNY++L   + LDRE++  Y L +TARD G+PSL A
Sbjct: 380 DAGENGLVTCEVPPGLPFSLTSSLKNYFTLKTSADLDRETVPEYNLSITARDAGTPSLSA 439

Query: 438 TARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENALVSYSLVER 497
              V V+V+D+NDN P  +Q  Y V+++ENN PG  I  +S  D DA +NA +S+ L+E+
Sbjct: 440 LTIVRVQVSDINDNPPQSSQSSYDVYIEENNLPGAPILNLSVWDPDAPQNARLSFFLLEQ 499

Query: 498 RVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVFVLD 557
                 +  Y +++ ++G V +L PLD+E+    +      D G P L +N+++ +FV D
Sbjct: 500 GAETGLVGRYFTINRDNGIVSSLVPLDYEDRREFELTAHISDGGTPVLATNISVNIFVTD 559

Query: 558 ENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDADSGYNAWLSYELQPAAGG 617
            NDNAP +L PR G   G+  E++PR   AGH+V++V   DAD+G+NAWLSY L  +   
Sbjct: 560 RNDNAPQVLYPRPG---GSSVEMLPRGTSAGHLVSRVVGWDADAGHNAWLSYSLLGSPNQ 616

Query: 618 ARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALTATATVLVSLVESGQAPK 677
           +   F +GL+TG+IST R + + D  R  L VL+KD+GEP+L+ TAT+ VS+ E   +P+
Sbjct: 617 SL--FAIGLHTGQISTARPVQDTDSPRQTLTVLIKDNGEPSLSTTATLTVSVTE--DSPE 672

Query: 678 ASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTL 715
           A +    G A P     ++  YL++++  VS   V+T+
Sbjct: 673 ARAEFPSGSA-PREQKKNLTFYLLLSLILVSVGFVVTV 709


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,801,169
Number of Sequences: 37866
Number of extensions: 1390228
Number of successful extensions: 10008
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2954
Number of HSP's gapped (non-prelim): 716
length of query: 807
length of database: 18,247,518
effective HSP length: 110
effective length of query: 697
effective length of database: 14,082,258
effective search space: 9815333826
effective search space used: 9815333826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.

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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.