OPN1LW 37789

Name: OPN1LW	Sequence: fasta or formatted (364aa)		NCBI GI: 9910526
Description: opsin 1 (cone pigments), long-wave-sensitive		Referenced in: Photoreceptors and Related Functions
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.3 34 3 C cysteine 3.0 11 2 D aspartate 1.9 7 2 E glutamate 3.0 11 1 F phenylalanine 5.5 20 2 G glycine 5.5 20 1 H histidine 1.9 7 1 I isoleucine 6.6 24 2 K lysine 3.8 14 2 L leucine 7.7 28 1 M methionine 3.0 11 1 N asparagine 3.3 12 1 P proline 5.2 19 2 Q glutamine 3.6 13 2 R arginine 3.3 12 1 S serine 9.6 35 2 T threonine 5.5 20 1 V valine 9.9 36 3 W tryptophan 3.8 14 1 Y tyrosine 4.4 16 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 opsin 1 (cone pigments), long-wave-sensitive OPN1MW2 0.968 opsin 1 (cone pigments), medium-wave-sensitive 2 [H... OPN1MW 0.968 opsin 1 (cone pigments), medium-wave-sensitive OPN1SW 0.376 opsin 1 (cone pigments), short-wave-sensitive RHO 0.363 rhodopsin OPN3 0.166 opsin 3 RRH 0.161 peropsin OPN4 0.157 opsin 4 isoform 1 OPN4 0.154 opsin 4 isoform 2 OPN5 0.133 opsin 5 isoform 1 MTNR1A 0.098 melatonin receptor 1A TACR2 0.094 tachykinin receptor 2 OPRK1 0.085 opioid receptor, kappa 1 HTR7 0.085 5-hydroxytryptamine receptor 7 isoform b HTR7 0.085 5-hydroxytryptamine receptor 7 isoform d HTR7 0.085 5-hydroxytryptamine receptor 7 isoform a TACR1 0.084 tachykinin receptor 1 isoform long TACR3 0.084 tachykinin receptor 3 GPR50 0.083 G protein-coupled receptor 50 TAAR1 0.081 trace amine associated receptor 1 TACR1 0.078 tachykinin receptor 1 isoform short MTNR1B 0.078 melatonin receptor 1B GPR83 0.077 G protein-coupled receptor 83 SSTR2 0.076 somatostatin receptor 2 TAAR5 0.076 trace amine associated receptor 5 SSTR5 0.074 somatostatin receptor 5 OPRM1 0.074 opioid receptor, mu 1 isoform MOR-1H OPRM1 0.074 opioid receptor, mu 1 isoform MOR-1 OPRM1 0.074 opioid receptor, mu 1 isoform MOR-1B5 OPRM1 0.074 opioid receptor, mu 1 isoform MOR-1B2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.