Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TACR1 Sequence: fasta or formatted (311aa) NCBI GI: 7669546
Description:

tachykinin receptor 1 isoform short

Referenced in:

Peptide and Protein G-coupled Signals

Other entries for this name:
alt prot [407aa] tachykinin receptor 1 isoform long
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         27           3
 C cysteine            2.6          8           2
 D aspartate           2.6          8           1
 E glutamate           2.9          9           1
 F phenylalanine       5.8         18           2
 G glycine             1.9          6           1
 H histidine           2.6          8           1
 I isoleucine          8.4         26           2
 K lysine              3.2         10           2
 L leucine             8.4         26           3
 M methionine          4.2         13           2
 N asparagine          4.8         15           1
 P proline             5.5         17           1
 Q glutamine           2.6          8           2
 R arginine            2.6          8           1
 S serine              5.5         17           2
 T threonine           6.1         19           2
 V valine             12.2         38           3
 W tryptophan          2.9          9           1
 Y tyrosine            6.8         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tachykinin receptor 1 isoform short 
TACR1                 1.000   tachykinin receptor 1 isoform long 
TACR3                 0.657   tachykinin receptor 3 
TACR2                 0.541   tachykinin receptor 2 
GPR83                 0.250   G protein-coupled receptor 83 
NPY2R                 0.216   neuropeptide Y receptor Y2 
PRLHR                 0.203   G protein-coupled receptor 10 
QRFPR                 0.188   G protein-coupled receptor 103 
HCRTR2                0.183   orexin receptor 2 
NPFFR2                0.183   neuropeptide FF receptor 2 isoform 2 
NPFFR2                0.183   neuropeptide FF receptor 2 isoform 1 
NPFFR2                0.183   neuropeptide FF receptor 2 isoform 3 
PROKR2                0.180   prokineticin receptor 2 
PROKR1                0.179   G protein-coupled receptor 73 
BRS3                  0.175   bombesin-like receptor 3 
HCRTR1                0.170   orexin receptor 1 
OPRD1                 0.170   opioid receptor, delta 1 
OPRK1                 0.170   opioid receptor, kappa 1 
GRPR                  0.166   gastrin-releasing peptide receptor 
NPY1R                 0.164   neuropeptide Y receptor Y1 
OPRM1                 0.162   opioid receptor, mu 1 isoform MOR-1H 
OPRM1                 0.162   opioid receptor, mu 1 isoform MOR-1 
OPRM1                 0.162   opioid receptor, mu 1 isoform MOR-1B5 
OPRM1                 0.162   opioid receptor, mu 1 isoform MOR-1B2 
OPRM1                 0.162   opioid receptor, mu 1 isoform MOR-1B3 
OPRM1                 0.162   opioid receptor, mu 1 isoform MOR-1B1 
OPRM1                 0.162   opioid receptor, mu 1 isoform MOR-1A 
OPRM1                 0.162   opioid receptor, mu 1 isoform MOR-1B4 
OPRM1                 0.162   opioid receptor, mu 1 isoform MOR-1O 
OPRM1                 0.162   opioid receptor, mu 1 isoform MOR-1X 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press