Guide to the Human Genome
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Name: MTNR1A Sequence: fasta or formatted (350aa) NCBI GI: 5174593
Description:

melatonin receptor 1A

Referenced in:

Serotonin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         27           2
 C cysteine            2.9         10           1
 D aspartate           3.4         12           1
 E glutamate           0.6          2           1
 F phenylalanine       5.7         20           2
 G glycine             4.3         15           1
 H histidine           0.9          3           1
 I isoleucine          8.0         28           2
 K lysine              3.7         13           2
 L leucine            12.3         43           2
 M methionine          2.3          8           1
 N asparagine          6.6         23           3
 P proline             4.9         17           1
 Q glutamine           2.6          9           1
 R arginine            5.1         18           2
 S serine              7.7         27           2
 T threonine           2.6          9           1
 V valine             11.7         41           3
 W tryptophan          2.0          7           1
 Y tyrosine            5.1         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   melatonin receptor 1A 
MTNR1B                0.584   melatonin receptor 1B 
GPR50                 0.475   G protein-coupled receptor 50 
GALR1                 0.147   galanin receptor 1 
PRLHR                 0.140   G protein-coupled receptor 10 
NPFFR2                0.140   neuropeptide FF receptor 2 isoform 2 
NPFFR2                0.140   neuropeptide FF receptor 2 isoform 1 
NPFFR2                0.140   neuropeptide FF receptor 2 isoform 3 
OPRM1                 0.137   opioid receptor, mu 1 isoform MOR-1H 
OPRM1                 0.137   opioid receptor, mu 1 isoform MOR-1 
OPRM1                 0.137   opioid receptor, mu 1 isoform MOR-1B5 
OPRM1                 0.137   opioid receptor, mu 1 isoform MOR-1B2 
OPRM1                 0.137   opioid receptor, mu 1 isoform MOR-1B3 
OPRM1                 0.137   opioid receptor, mu 1 isoform MOR-1B1 
OPRM1                 0.137   opioid receptor, mu 1 isoform MOR-1A 
OPRM1                 0.137   opioid receptor, mu 1 isoform MOR-1B4 
OPRM1                 0.137   opioid receptor, mu 1 isoform MOR-1O 
OPRM1                 0.137   opioid receptor, mu 1 isoform MOR-1X 
GPR83                 0.134   G protein-coupled receptor 83 
NPY1R                 0.133   neuropeptide Y receptor Y1 
SSTR2                 0.133   somatostatin receptor 2 
QRFPR                 0.133   G protein-coupled receptor 103 
NPFFR1                0.133   neuropeptide FF receptor 1 
HRH2                  0.131   histamine receptor H2 isoform 1 
HRH2                  0.131   histamine receptor H2 isoform 2 
SSTR4                 0.125   somatostatin receptor 4 
GALR2                 0.125   galanin receptor 2 
OPRD1                 0.124   opioid receptor, delta 1 
SSTR5                 0.121   somatostatin receptor 5 
TACR2                 0.119   tachykinin receptor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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