OPN4 5186

Name: OPN4	Sequence: fasta or formatted (478aa)		NCBI GI: 15150803
Description: opsin 4 isoform 1		Referenced in: Circadian Rhythms Photoreceptors and Related Functions
Other entries for this name: alt prot [489aa] opsin 4 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.3 49 3 C cysteine 2.3 11 2 D aspartate 1.7 8 1 E glutamate 3.1 15 1 F phenylalanine 4.8 23 2 G glycine 6.5 31 1 H histidine 2.3 11 1 I isoleucine 5.6 27 3 K lysine 2.1 10 1 L leucine 10.9 52 2 M methionine 2.7 13 1 N asparagine 1.7 8 1 P proline 7.9 38 2 Q glutamine 3.1 15 2 R arginine 5.6 27 3 S serine 9.8 47 2 T threonine 6.7 32 1 V valine 5.9 28 1 W tryptophan 2.9 14 2 Y tyrosine 4.0 19 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 opsin 4 isoform 1 OPN4 0.992 opsin 4 isoform 2 RRH 0.154 peropsin RHO 0.140 rhodopsin OPN5 0.140 opsin 5 isoform 1 OPN3 0.138 opsin 3 OPN1MW2 0.125 opsin 1 (cone pigments), medium-wave-sensitive 2 [H... OPN1MW 0.125 opsin 1 (cone pigments), medium-wave-sensitive OPN1LW 0.119 opsin 1 (cone pigments), long-wave-sensitive OPN1SW 0.119 opsin 1 (cone pigments), short-wave-sensitive GPR161 0.111 G protein-coupled receptor 161 isoform 2 SSTR4 0.101 somatostatin receptor 4 RGR 0.094 retinal G-protein coupled receptor isoform 2 TACR2 0.092 tachykinin receptor 2 SSTR1 0.090 somatostatin receptor 1 TACR1 0.090 tachykinin receptor 1 isoform long RGR 0.089 retinal G-protein coupled receptor isoform 1 HTR7 0.089 5-hydroxytryptamine receptor 7 isoform b HTR7 0.089 5-hydroxytryptamine receptor 7 isoform d HTR7 0.089 5-hydroxytryptamine receptor 7 isoform a ADRA1B 0.088 alpha-1B-adrenergic receptor TAAR6 0.087 trace amine associated receptor 6 TAAR8 0.086 trace amine associated receptor 8 SSTR5 0.086 somatostatin receptor 5 MTNR1B 0.086 melatonin receptor 1B GRPR 0.085 gastrin-releasing peptide receptor TACR1 0.085 tachykinin receptor 1 isoform short LOC100293905 0.085 PREDICTED: similar to gastrin-releasing peptide rec... TACR3 0.084 tachykinin receptor 3 PRLHR 0.084 G protein-coupled receptor 10 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.