Guide to the Human Genome
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Name: MTNR1B Sequence: fasta or formatted (362aa) NCBI GI: 5174595
Description:

melatonin receptor 1B

Referenced in:

Serotonin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         40           2
 C cysteine            3.6         13           2
 D aspartate           1.9          7           1
 E glutamate           2.8         10           2
 F phenylalanine       5.0         18           2
 G glycine             5.2         19           2
 H histidine           2.5          9           1
 I isoleucine          7.5         27           2
 K lysine              1.9          7           1
 L leucine            12.4         45           2
 M methionine          1.4          5           1
 N asparagine          4.4         16           1
 P proline             6.1         22           2
 Q glutamine           2.8         10           1
 R arginine            5.8         21           2
 S serine              6.6         24           1
 T threonine           3.3         12           2
 V valine              9.1         33           3
 W tryptophan          2.5          9           1
 Y tyrosine            4.1         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   melatonin receptor 1B 
MTNR1A                0.555   melatonin receptor 1A 
GPR50                 0.429   G protein-coupled receptor 50 
NPY1R                 0.143   neuropeptide Y receptor Y1 
SSTR1                 0.132   somatostatin receptor 1 
NPFFR1                0.130   neuropeptide FF receptor 1 
QRFPR                 0.130   G protein-coupled receptor 103 
SSTR5                 0.129   somatostatin receptor 5 
PRLHR                 0.129   G protein-coupled receptor 10 
GALR1                 0.127   galanin receptor 1 
TACR1                 0.126   tachykinin receptor 1 isoform long 
SSTR4                 0.126   somatostatin receptor 4 
PPYR1                 0.123   pancreatic polypeptide receptor 1 
SSTR2                 0.122   somatostatin receptor 2 
TACR1                 0.119   tachykinin receptor 1 isoform short 
GPR83                 0.116   G protein-coupled receptor 83 
OPRM1                 0.115   opioid receptor, mu 1 isoform MOR-1H 
OPRM1                 0.115   opioid receptor, mu 1 isoform MOR-1 
OPRM1                 0.115   opioid receptor, mu 1 isoform MOR-1B5 
OPRM1                 0.115   opioid receptor, mu 1 isoform MOR-1B2 
OPRM1                 0.115   opioid receptor, mu 1 isoform MOR-1B3 
OPRM1                 0.115   opioid receptor, mu 1 isoform MOR-1B1 
OPN4                  0.115   opsin 4 isoform 1 
OPRM1                 0.115   opioid receptor, mu 1 isoform MOR-1A 
OPRM1                 0.115   opioid receptor, mu 1 isoform MOR-1B4 
HRH2                  0.115   histamine receptor H2 isoform 1 
HRH2                  0.115   histamine receptor H2 isoform 2 
OPRM1                 0.115   opioid receptor, mu 1 isoform MOR-1O 
OPRM1                 0.115   opioid receptor, mu 1 isoform MOR-1X 
SSTR3                 0.113   somatostatin receptor 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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