Guide to the Human Genome
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Name: TACR1 Sequence: fasta or formatted (407aa) NCBI GI: 4507343
Description:

tachykinin receptor 1 isoform long

Referenced in:

Peptide and Protein G-coupled Signals

Other entries for this name:
alt prot [311aa] tachykinin receptor 1 isoform short
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         31           3
 C cysteine            2.7         11           2
 D aspartate           2.9         12           1
 E glutamate           4.2         17           3
 F phenylalanine       5.9         24           2
 G glycine             2.9         12           1
 H histidine           2.5         10           1
 I isoleucine          6.9         28           2
 K lysine              3.7         15           2
 L leucine             8.1         33           3
 M methionine          3.7         15           2
 N asparagine          4.2         17           1
 P proline             5.2         21           1
 Q glutamine           2.5         10           2
 R arginine            3.2         13           1
 S serine              8.4         34           2
 T threonine           6.9         28           2
 V valine             10.6         43           3
 W tryptophan          2.2          9           1
 Y tyrosine            5.9         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tachykinin receptor 1 isoform long 
TACR1                 0.763   tachykinin receptor 1 isoform short 
TACR3                 0.568   tachykinin receptor 3 
TACR2                 0.451   tachykinin receptor 2 
GPR83                 0.200   G protein-coupled receptor 83 
NPY2R                 0.181   neuropeptide Y receptor Y2 
HCRTR2                0.160   orexin receptor 2 
PRLHR                 0.160   G protein-coupled receptor 10 
NPFFR2                0.156   neuropeptide FF receptor 2 isoform 2 
NPFFR2                0.156   neuropeptide FF receptor 2 isoform 1 
NPFFR2                0.156   neuropeptide FF receptor 2 isoform 3 
HCRTR1                0.154   orexin receptor 1 
QRFPR                 0.147   G protein-coupled receptor 103 
BRS3                  0.145   bombesin-like receptor 3 
NPY1R                 0.139   neuropeptide Y receptor Y1 
PROKR2                0.139   prokineticin receptor 2 
GRPR                  0.138   gastrin-releasing peptide receptor 
PROKR1                0.136   G protein-coupled receptor 73 
OPRD1                 0.136   opioid receptor, delta 1 
LOC100293905          0.135   PREDICTED: similar to gastrin-releasing peptide rec...
OPRK1                 0.135   opioid receptor, kappa 1 
SSTR4                 0.133   somatostatin receptor 4 
NPFFR1                0.131   neuropeptide FF receptor 1 
GALR1                 0.130   galanin receptor 1 
OPRM1                 0.129   opioid receptor, mu 1 isoform MOR-1H 
OPRM1                 0.129   opioid receptor, mu 1 isoform MOR-1 
OPRM1                 0.129   opioid receptor, mu 1 isoform MOR-1B5 
OPRM1                 0.129   opioid receptor, mu 1 isoform MOR-1B2 
OPRM1                 0.129   opioid receptor, mu 1 isoform MOR-1B3 
OPRM1                 0.129   opioid receptor, mu 1 isoform MOR-1B1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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