Guide to the Human Genome
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Name: OPN1MW Sequence: fasta or formatted (364aa) NCBI GI: 4503965
Description:

opsin 1 (cone pigments), medium-wave-sensitive

Referenced in:

Photoreceptors and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         34           3
 C cysteine            3.0         11           2
 D aspartate           1.9          7           2
 E glutamate           3.0         11           1
 F phenylalanine       6.0         22           2
 G glycine             5.5         20           1
 H histidine           1.9          7           1
 I isoleucine          6.0         22           2
 K lysine              3.8         14           2
 L leucine             7.7         28           1
 M methionine          3.0         11           1
 N asparagine          3.3         12           1
 P proline             5.5         20           2
 Q glutamine           3.6         13           2
 R arginine            3.3         12           1
 S serine              9.3         34           2
 T threonine           5.2         19           1
 V valine             10.4         38           3
 W tryptophan          3.8         14           1
 Y tyrosine            4.1         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   opsin 1 (cone pigments), medium-wave-sensitive 
OPN1MW2               1.000   opsin 1 (cone pigments), medium-wave-sensitive 2 [H...
OPN1LW                0.967   opsin 1 (cone pigments), long-wave-sensitive 
OPN1SW                0.375   opsin 1 (cone pigments), short-wave-sensitive 
RHO                   0.368   rhodopsin 
OPN4                  0.163   opsin 4 isoform 1 
RRH                   0.163   peropsin 
OPN4                  0.159   opsin 4 isoform 2 
OPN3                  0.157   opsin 3 
OPN5                  0.136   opsin 5 isoform 1 
TACR2                 0.098   tachykinin receptor 2 
MTNR1A                0.092   melatonin receptor 1A 
TACR1                 0.088   tachykinin receptor 1 isoform long 
TACR3                 0.087   tachykinin receptor 3 
SSTR2                 0.084   somatostatin receptor 2 
TACR1                 0.084   tachykinin receptor 1 isoform short 
HTR7                  0.078   5-hydroxytryptamine receptor 7 isoform b 
HTR7                  0.078   5-hydroxytryptamine receptor 7 isoform d 
HTR7                  0.078   5-hydroxytryptamine receptor 7 isoform a 
OPRK1                 0.078   opioid receptor, kappa 1 
TAAR1                 0.078   trace amine associated receptor 1 
GPR50                 0.078   G protein-coupled receptor 50 
GPR83                 0.077   G protein-coupled receptor 83 
SSTR5                 0.077   somatostatin receptor 5 
KISS1R                0.076   G protein-coupled receptor 54 
MTNR1B                0.074   melatonin receptor 1B 
GALR1                 0.073   galanin receptor 1 
NPFFR2                0.073   neuropeptide FF receptor 2 isoform 2 
NPFFR2                0.073   neuropeptide FF receptor 2 isoform 1 
NPFFR2                0.073   neuropeptide FF receptor 2 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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