OPN1MW 28709

Name: OPN1MW	Sequence: fasta or formatted (364aa)		NCBI GI: 4503965
Description: opsin 1 (cone pigments), medium-wave-sensitive		Referenced in: Photoreceptors and Related Functions
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.3 34 3 C cysteine 3.0 11 2 D aspartate 1.9 7 2 E glutamate 3.0 11 1 F phenylalanine 6.0 22 2 G glycine 5.5 20 1 H histidine 1.9 7 1 I isoleucine 6.0 22 2 K lysine 3.8 14 2 L leucine 7.7 28 1 M methionine 3.0 11 1 N asparagine 3.3 12 1 P proline 5.5 20 2 Q glutamine 3.6 13 2 R arginine 3.3 12 1 S serine 9.3 34 2 T threonine 5.2 19 1 V valine 10.4 38 3 W tryptophan 3.8 14 1 Y tyrosine 4.1 15 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 opsin 1 (cone pigments), medium-wave-sensitive OPN1MW2 1.000 opsin 1 (cone pigments), medium-wave-sensitive 2 [H... OPN1LW 0.967 opsin 1 (cone pigments), long-wave-sensitive OPN1SW 0.375 opsin 1 (cone pigments), short-wave-sensitive RHO 0.368 rhodopsin OPN4 0.163 opsin 4 isoform 1 RRH 0.163 peropsin OPN4 0.159 opsin 4 isoform 2 OPN3 0.157 opsin 3 OPN5 0.136 opsin 5 isoform 1 TACR2 0.098 tachykinin receptor 2 MTNR1A 0.092 melatonin receptor 1A TACR1 0.088 tachykinin receptor 1 isoform long TACR3 0.087 tachykinin receptor 3 SSTR2 0.084 somatostatin receptor 2 TACR1 0.084 tachykinin receptor 1 isoform short HTR7 0.078 5-hydroxytryptamine receptor 7 isoform b HTR7 0.078 5-hydroxytryptamine receptor 7 isoform d HTR7 0.078 5-hydroxytryptamine receptor 7 isoform a OPRK1 0.078 opioid receptor, kappa 1 TAAR1 0.078 trace amine associated receptor 1 GPR50 0.078 G protein-coupled receptor 50 GPR83 0.077 G protein-coupled receptor 83 SSTR5 0.077 somatostatin receptor 5 KISS1R 0.076 G protein-coupled receptor 54 MTNR1B 0.074 melatonin receptor 1B GALR1 0.073 galanin receptor 1 NPFFR2 0.073 neuropeptide FF receptor 2 isoform 2 NPFFR2 0.073 neuropeptide FF receptor 2 isoform 1 NPFFR2 0.073 neuropeptide FF receptor 2 isoform 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.