OPN1SW 28335

Name: OPN1SW	Sequence: fasta or formatted (348aa)		NCBI GI: 4502387
Description: opsin 1 (cone pigments), short-wave-sensitive		Referenced in: Photoreceptors and Related Functions
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.2 25 2 C cysteine 4.3 15 1 D aspartate 1.4 5 1 E glutamate 3.4 12 3 F phenylalanine 9.5 33 2 G glycine 6.6 23 2 H histidine 1.1 4 1 I isoleucine 5.5 19 2 K lysine 4.0 14 2 L leucine 8.0 28 2 M methionine 3.4 12 1 N asparagine 3.4 12 2 P proline 4.6 16 2 Q glutamine 3.7 13 3 R arginine 3.7 13 1 S serine 8.0 28 2 T threonine 5.5 19 2 V valine 9.8 34 3 W tryptophan 2.0 7 1 Y tyrosine 4.6 16 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 opsin 1 (cone pigments), short-wave-sensitive RHO 0.425 rhodopsin OPN1MW2 0.393 opsin 1 (cone pigments), medium-wave-sensitive 2 [H... OPN1MW 0.393 opsin 1 (cone pigments), medium-wave-sensitive OPN1LW 0.393 opsin 1 (cone pigments), long-wave-sensitive OPN3 0.176 opsin 3 OPN4 0.164 opsin 4 isoform 1 OPN4 0.157 opsin 4 isoform 2 OPN5 0.121 opsin 5 isoform 1 RRH 0.118 peropsin NPY1R 0.115 neuropeptide Y receptor Y1 TACR1 0.111 tachykinin receptor 1 isoform long TACR3 0.108 tachykinin receptor 3 TACR1 0.107 tachykinin receptor 1 isoform short CCKAR 0.097 cholecystokinin A receptor TACR2 0.097 tachykinin receptor 2 OPRK1 0.094 opioid receptor, kappa 1 OPRL1 0.088 opiate receptor-like 1 OPRL1 0.088 opiate receptor-like 1 SSTR2 0.084 somatostatin receptor 2 OPN5 0.082 opsin 5 isoform 2 GALR2 0.082 galanin receptor 2 PPYR1 0.081 pancreatic polypeptide receptor 1 HTR7 0.081 5-hydroxytryptamine receptor 7 isoform b HTR7 0.081 5-hydroxytryptamine receptor 7 isoform d HTR7 0.081 5-hydroxytryptamine receptor 7 isoform a QRFPR 0.081 G protein-coupled receptor 103 GALR1 0.079 galanin receptor 1 SSTR1 0.078 somatostatin receptor 1 PRLHR 0.076 G protein-coupled receptor 10 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.