OPN4 35280

Name: OPN4	Sequence: fasta or formatted (489aa)		NCBI GI: 71999143
Description: opsin 4 isoform 2		Referenced in: Circadian Rhythms Photoreceptors and Related Functions
Other entries for this name: alt prot [478aa] opsin 4 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.2 50 3 C cysteine 2.2 11 2 D aspartate 1.6 8 1 E glutamate 3.1 15 1 F phenylalanine 4.7 23 2 G glycine 6.5 32 1 H histidine 2.2 11 1 I isoleucine 5.5 27 3 K lysine 2.0 10 1 L leucine 10.8 53 2 M methionine 3.1 15 2 N asparagine 1.6 8 1 P proline 7.8 38 2 Q glutamine 3.3 16 2 R arginine 5.7 28 3 S serine 9.6 47 2 T threonine 6.7 33 1 V valine 6.3 31 1 W tryptophan 2.9 14 2 Y tyrosine 3.9 19 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 opsin 4 isoform 2 OPN4 0.971 opsin 4 isoform 1 RRH 0.143 peropsin RHO 0.136 rhodopsin OPN5 0.130 opsin 5 isoform 1 OPN3 0.127 opsin 3 OPN1MW2 0.119 opsin 1 (cone pigments), medium-wave-sensitive 2 [H... OPN1MW 0.119 opsin 1 (cone pigments), medium-wave-sensitive OPN1LW 0.115 opsin 1 (cone pigments), long-wave-sensitive OPN1SW 0.112 opsin 1 (cone pigments), short-wave-sensitive GPR161 0.102 G protein-coupled receptor 161 isoform 2 SSTR4 0.091 somatostatin receptor 4 TACR2 0.085 tachykinin receptor 2 RGR 0.083 retinal G-protein coupled receptor isoform 2 TACR1 0.082 tachykinin receptor 1 isoform long SSTR1 0.081 somatostatin receptor 1 TAAR8 0.079 trace amine associated receptor 8 HTR7 0.079 5-hydroxytryptamine receptor 7 isoform b HTR7 0.079 5-hydroxytryptamine receptor 7 isoform d HTR7 0.079 5-hydroxytryptamine receptor 7 isoform a RGR 0.079 retinal G-protein coupled receptor isoform 1 ADRA1B 0.078 alpha-1B-adrenergic receptor TAAR6 0.078 trace amine associated receptor 6 TACR1 0.077 tachykinin receptor 1 isoform short SSTR5 0.077 somatostatin receptor 5 TACR3 0.077 tachykinin receptor 3 TAAR9 0.077 trace amine associated receptor 9 MTNR1B 0.076 melatonin receptor 1B GPR135 0.076 G protein-coupled receptor 135 GRPR 0.076 gastrin-releasing peptide receptor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.