Guide to the Human Genome
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Name: TAAR1 Sequence: fasta or formatted (339aa) NCBI GI: 21264324
Description:

trace amine associated receptor 1

Referenced in:

G-Protein-coupled Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         15           1
 C cysteine            4.1         14           1
 D aspartate           2.7          9           1
 E glutamate           2.7          9           2
 F phenylalanine       8.3         28           2
 G glycine             4.4         15           2
 H histidine           2.9         10           1
 I isoleucine         10.3         35           2
 K lysine              5.6         19           1
 L leucine            10.0         34           2
 M methionine          5.3         18           2
 N asparagine          4.1         14           2
 P proline             3.5         12           2
 Q glutamine           1.8          6           1
 R arginine            2.9         10           1
 S serine              8.8         30           2
 T threonine           3.8         13           2
 V valine              7.4         25           1
 W tryptophan          2.1          7           1
 Y tyrosine            4.7         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   trace amine associated receptor 1 
TAAR2                 0.447   trace amine associated receptor 2 isoform 1 
TAAR2                 0.430   trace amine associated receptor 2 isoform 2 
TAAR9                 0.391   trace amine associated receptor 9 
TAAR6                 0.375   trace amine associated receptor 6 
TAAR8                 0.364   trace amine associated receptor 8 
TAAR5                 0.348   trace amine associated receptor 5 
HTR4                  0.265   serotonin 5-HT4 receptor isoform n 
HTR4                  0.265   serotonin 5-HT4 receptor isoform i 
HTR4                  0.265   serotonin 5-HT4 receptor isoform d 
HTR4                  0.265   serotonin 5-HT4 receptor isoform a 
HTR4                  0.265   serotonin 5-HT4 receptor isoform g 
HTR4                  0.265   serotonin 5-HT4 receptor isoform b 
HTR4                  0.261   serotonin 5-HT4 receptor isoform hb 
HRH2                  0.230   histamine receptor H2 isoform 1 
HRH2                  0.230   histamine receptor H2 isoform 2 
HTR1D                 0.218   5-hydroxytryptamine (serotonin) receptor 1D 
DRD1                  0.215   dopamine receptor D1 
DRD5                  0.213   dopamine receptor D5 
ADRB2                 0.210   adrenergic, beta-2-, receptor, surface 
ADRB1                 0.200   beta-1-adrenergic receptor 
ADRA1A                0.191   alpha-1A-adrenergic receptor isoform 4 
ADRA1A                0.191   alpha-1A-adrenergic receptor isoform 1 
ADRA1A                0.191   alpha-1A-adrenergic receptor isoform 2 
ADRA1A                0.191   alpha-1A-adrenergic receptor isoform 3 
HTR7                  0.191   5-hydroxytryptamine receptor 7 isoform b 
HTR7                  0.191   5-hydroxytryptamine receptor 7 isoform d 
HTR7                  0.191   5-hydroxytryptamine receptor 7 isoform a 
HTR1F                 0.190   5-hydroxytryptamine (serotonin) receptor 1F 
HTR6                  0.185   5-hydroxytryptamine (serotonin) receptor 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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