Guide to the Human Genome
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Name: OTOR Sequence: fasta or formatted (128aa) NCBI GI: 9910470
Description:

otoraplin precursor

Referenced in:

Auditory and Vestibular Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         11           1
 C cysteine            3.9          5           1
 D aspartate           7.0          9           2
 E glutamate           7.0          9           1
 F phenylalanine       5.5          7           2
 G glycine             7.8         10           1
 H histidine           0.8          1           1
 I isoleucine          4.7          6           1
 K lysine              6.2          8           2
 L leucine             7.8         10           3
 M methionine          2.3          3           1
 N asparagine          3.1          4           1
 P proline             3.1          4           1
 Q glutamine           4.7          6           2
 R arginine            3.9          5           1
 S serine              3.9          5           1
 T threonine           3.1          4           2
 V valine             10.2         13           2
 W tryptophan          0.8          1           1
 Y tyrosine            5.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   otoraplin precursor 
MIA                   0.312   melanoma inhibitory activity 
MIA3                  0.267   melanoma inhibitory activity family, member 3 [Homo...
MIA2                  0.200   melanoma inhibitory activity 2 
VAV3                  0.042   vav 3 guanine nucleotide exchange factor isoform 2 ...
VAV3                  0.042   vav 3 guanine nucleotide exchange factor isoform 1 ...
AHI1                  0.042   Abelson helper integration site 1 isoform a 
AHI1                  0.042   Abelson helper integration site 1 isoform a 
AHI1                  0.042   Abelson helper integration site 1 isoform a 
VAV1                  0.042   vav 1 guanine nucleotide exchange factor 
MAP3K11               0.013   mitogen-activated protein kinase kinase kinase 11 [Ho...
PRDM2                 0.008   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.008   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.008   retinoblastoma protein-binding zinc finger protein i...
KIAA1804              0.008   mixed lineage kinase 4 
MAP3K10               0.008   mitogen-activated protein kinase kinase kinase 10 [H...
SLCO2B1               0.008   solute carrier organic anion transporter family, me...
SLCO2B1               0.008   solute carrier organic anion transporter family, me...
SLCO2B1               0.008   solute carrier organic anion transporter family, memb...
SORBS1                0.004   sorbin and SH3 domain containing 1 isoform 7 
SORBS1                0.004   sorbin and SH3 domain containing 1 isoform 6 
SORBS1                0.004   sorbin and SH3 domain containing 1 isoform 5 
SORBS1                0.004   sorbin and SH3 domain containing 1 isoform 4 
SORBS1                0.004   sorbin and SH3 domain containing 1 isoform 3 
SORBS1                0.004   sorbin and SH3 domain containing 1 isoform 2 
SORBS1                0.004   sorbin and SH3 domain containing 1 isoform 1 
ITSN2                 0.004   intersectin 2 isoform 3 
ITSN2                 0.004   intersectin 2 isoform 1 
ITSN2                 0.004   intersectin 2 isoform 2 
CCRL1                 0.004   chemokine (C-C motif) receptor-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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