Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLCO2B1 Sequence: fasta or formatted (709aa) NCBI GI: 6005820
Description:

solute carrier organic anion transporter family, member 2B1 isoform 1

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [687aa] solute carrier organic anion transporter family, member 2B1 isofo...
alt prot [565aa] solute carrier organic anion transporter family, member 2B1 isofo...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         50           2
 C cysteine            3.4         24           1
 D aspartate           3.2         23           2
 E glutamate           3.2         23           1
 F phenylalanine       5.6         40           3
 G glycine             8.2         58           2
 H histidine           2.3         16           1
 I isoleucine          5.2         37           1
 K lysine              3.9         28           2
 L leucine            12.1         86           3
 M methionine          2.7         19           2
 N asparagine          2.7         19           2
 P proline             6.9         49           1
 Q glutamine           3.9         28           2
 R arginine            4.1         29           2
 S serine              9.3         66           2
 T threonine           4.9         35           2
 V valine              8.2         58           2
 W tryptophan          0.8          6           2
 Y tyrosine            2.1         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier organic anion transporter family, memb... 
SLCO2B1               0.968   solute carrier organic anion transporter family, me...
SLCO2B1               0.790   solute carrier organic anion transporter family, me...
SLCO2A1               0.364   solute carrier organic anion transporter family, me...
SLCO3A1               0.256   solute carrier organic anion transporter family, me...
SLCO3A1               0.255   solute carrier organic anion transporter family, me...
SLCO1C1               0.233   solute carrier organic anion transporter family, memb...
SLCO5A1               0.230   solute carrier organic anion transporter family, me...
SLCO1C1               0.225   solute carrier organic anion transporter family, me...
SLCO1B3               0.224   solute carrier organic anion transporter family, memb...
SLCO1B1               0.218   solute carrier organic anion transporter family, me...
SLCO1A2               0.214   organic anion transporting polypeptide A 
SLCO1A2               0.214   organic anion transporting polypeptide A 
LST-3TM12             0.204   liver-specific organic anion transporter 3TM12 [Hom...
SLCO1C1               0.196   solute carrier organic anion transporter family, me...
SLCO4C1               0.194   solute carrier organic anion transporter family, mem...
SLCO4A1               0.189   solute carrier organic anion transporter family memb...
SLCO5A1               0.187   solute carrier organic anion transporter family, me...
SLCO1C1               0.176   solute carrier organic anion transporter family, me...
SLCO6A1               0.125   solute carrier organic anion transporter family, mem...
SLCO5A1               0.118   solute carrier organic anion transporter family, me...
MRPS31                0.006   mitochondrial ribosomal protein S31 
FLNA                  0.004   filamin A, alpha isoform 2 
FLNA                  0.004   filamin A, alpha isoform 1 
LOC730429             0.004   PREDICTED: similar to ubiquitin protein ligase E3 c...
KRTAP10-6             0.004   keratin associated protein 10-6 
GPR32                 0.004   G protein-coupled receptor 32 
TNFSF13               0.004   tumor necrosis factor ligand superfamily, member 13 ...
TNFSF13               0.004   tumor necrosis factor ligand superfamily, member 13 i...
TNFSF13               0.004   tumor necrosis factor ligand superfamily, member 13 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press