Guide to the Human Genome
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Name: MIA Sequence: fasta or formatted (131aa) NCBI GI: 5729925
Description:

melanoma inhibitory activity

Referenced in:

Auditory and Vestibular Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9          9           2
 C cysteine            3.8          5           1
 D aspartate           7.6         10           1
 E glutamate           1.5          2           1
 F phenylalanine       4.6          6           1
 G glycine            10.7         14           2
 H histidine           1.5          2           1
 I isoleucine          3.8          5           2
 K lysine              6.1          8           1
 L leucine             9.9         13           2
 M methionine          3.1          4           1
 N asparagine          0.0          0           0
 P proline             5.3          7           1
 Q glutamine           4.6          6           1
 R arginine            6.9          9           1
 S serine              6.9          9           2
 T threonine           2.3          3           1
 V valine              8.4         11           2
 W tryptophan          1.5          2           1
 Y tyrosine            4.6          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   melanoma inhibitory activity 
OTOR                  0.300   otoraplin precursor 
MIA3                  0.180   melanoma inhibitory activity family, member 3 [Homo...
MIA2                  0.172   melanoma inhibitory activity 2 
VAV3                  0.084   vav 3 guanine nucleotide exchange factor isoform 2 ...
VAV3                  0.084   vav 3 guanine nucleotide exchange factor isoform 1 ...
VAV2                  0.064   vav 2 guanine nucleotide exchange factor isoform 1 ...
VAV2                  0.064   vav 2 guanine nucleotide exchange factor isoform 2 [...
AHI1                  0.048   Abelson helper integration site 1 isoform a 
AHI1                  0.048   Abelson helper integration site 1 isoform a 
AHI1                  0.048   Abelson helper integration site 1 isoform a 
VAV1                  0.032   vav 1 guanine nucleotide exchange factor 
SHANK1                0.032   SH3 and multiple ankyrin repeat domains 1 
MAP3K9                0.020   mitogen-activated protein kinase kinase kinase 9 [Ho...
ITSN2                 0.020   intersectin 2 isoform 3 
ITSN2                 0.020   intersectin 2 isoform 1 
ITSN2                 0.020   intersectin 2 isoform 2 
ITSN1                 0.020   intersectin 1 isoform ITSN-s 
ITSN1                 0.020   intersectin 1 isoform ITSN-l 
KIAA1804              0.020   mixed lineage kinase 4 
SORBS3                0.016   sorbin and SH3 domain containing 3 isoform 1 
SORBS3                0.016   sorbin and SH3 domain containing 3 isoform 2 
BLK                   0.012   B lymphoid tyrosine kinase 
ARHGEF6               0.012   Rac/Cdc42 guanine nucleotide exchange factor 6 [Homo...
CYB561D1              0.012   cytochrome b-561 domain containing 1 isoform 1 [Hom...
SH3KBP1               0.012   SH3-domain kinase binding protein 1 isoform a 
FCHSD2                0.012   FCH and double SH3 domains 2 
CYB561D1              0.008   cytochrome b-561 domain containing 1 isoform 5 [Hom...
CYB561D1              0.008   cytochrome b-561 domain containing 1 isoform 4 [Hom...
SH3D19                0.008   SH3 domain containing 19 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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