Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ASPH Sequence: fasta or formatted (225aa) NCBI GI: 9910364
Description:

aspartate beta-hydroxylase isoform e

Referenced in:

Additional Protein Modifications

Other entries for this name:
alt prot [313aa] aspartate beta-hydroxylase isoform c
alt prot [210aa] aspartate beta-hydroxylase isoform d
alt prot [299aa] aspartate beta-hydroxylase isoform b
alt prot [758aa] aspartate beta-hydroxylase isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         14           1
 C cysteine            0.0          0           0
 D aspartate           9.3         21           2
 E glutamate           9.8         22           2
 F phenylalanine       2.7          6           2
 G glycine             7.6         17           2
 H histidine           1.3          3           1
 I isoleucine          1.3          3           1
 K lysine             19.6         44           2
 L leucine             6.7         15           2
 M methionine          1.8          4           1
 N asparagine          3.1          7           1
 P proline             1.3          3           1
 Q glutamine           0.9          2           1
 R arginine            6.2         14           1
 S serine              7.6         17           2
 T threonine           4.9         11           1
 V valine              6.7         15           2
 W tryptophan          1.3          3           1
 Y tyrosine            1.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   aspartate beta-hydroxylase isoform e 
ASPH                  0.910   aspartate beta-hydroxylase isoform d 
ASPH                  0.421   aspartate beta-hydroxylase isoform b 
ASPH                  0.307   aspartate beta-hydroxylase isoform c 
ASPH                  0.307   aspartate beta-hydroxylase isoform a 
TRDN                  0.123   triadin 
LOC100133599          0.085   PREDICTED: hypothetical protein 
LOC100133599          0.085   PREDICTED: hypothetical protein 
CYLC1                 0.085   cylicin, basic protein of sperm head cytoskeleton 1...
LOC100294088          0.080   PREDICTED: hypothetical protein, partial 
SFRS12                0.076   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.076   splicing factor, arginine/serine-rich 12 isoform b [...
MAP1B                 0.069   microtubule-associated protein 1B 
CYLC2                 0.061   cylicin 2 
FAM133B               0.061   hypothetical protein LOC257415 isoform 2 
FAM133B               0.061   hypothetical protein LOC257415 isoform 1 
ANKRD12               0.059   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.059   ankyrin repeat domain 12 isoform 1 
MPHOSPH8              0.059   M-phase phosphoprotein 8 
FAM133A               0.059   hypothetical protein LOC286499 
SFRS4                 0.059   splicing factor, arginine/serine-rich 4 
CCAR1                 0.059   cell-cycle and apoptosis regulatory protein 1 
RBM25                 0.057   RNA binding motif protein 25 
NKAP                  0.057   NFKB activating protein 
WDR60                 0.057   WD repeat domain 60 
CHAF1A                0.057   chromatin assembly factor 1, subunit A (p150) 
THOC2                 0.057   THO complex 2 
UPF2                  0.057   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.057   UPF2 regulator of nonsense transcripts homolog [Homo...
CROP                  0.054   cisplatin resistance-associated overexpressed protei...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press