Guide to the Human Genome
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Name: FAM133B Sequence: fasta or formatted (247aa) NCBI GI: 91206456
Description:

hypothetical protein LOC257415 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {237aa} hypothetical protein LOC257415 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6          9           2
 C cysteine            0.0          0           0
 D aspartate           4.9         12           1
 E glutamate          12.1         30           2
 F phenylalanine       0.4          1           1
 G glycine             3.6          9           1
 H histidine           1.6          4           1
 I isoleucine          2.0          5           1
 K lysine             24.7         61           6
 L leucine             4.0         10           2
 M methionine          2.4          6           1
 N asparagine          2.4          6           1
 P proline             3.2          8           1
 Q glutamine           2.0          5           1
 R arginine            6.5         16           2
 S serine             19.8         49           8
 T threonine           2.4          6           1
 V valine              1.2          3           1
 W tryptophan          0.8          2           1
 Y tyrosine            2.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC257415 isoform 1 
FAM133B               0.954   hypothetical protein LOC257415 isoform 2 
FAM133A               0.776   hypothetical protein LOC286499 
LOC100133599          0.118   PREDICTED: hypothetical protein 
CYLC2                 0.114   cylicin 2 
SFRS12                0.112   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.112   splicing factor, arginine/serine-rich 12 isoform b [...
NKAP                  0.112   NFKB activating protein 
LOC100133599          0.110   PREDICTED: hypothetical protein 
MLLT3                 0.110   myeloid/lymphoid or mixed-lineage leukemia (trithor...
SFRS4                 0.107   splicing factor, arginine/serine-rich 4 
LOC100294088          0.103   PREDICTED: hypothetical protein, partial 
CIR1                  0.101   CBF1 interacting corepressor 
CYLC1                 0.101   cylicin, basic protein of sperm head cytoskeleton 1...
ATRX                  0.099   transcriptional regulator ATRX isoform 2 
ATRX                  0.099   transcriptional regulator ATRX isoform 1 
CROP                  0.099   cisplatin resistance-associated overexpressed protei...
CROP                  0.099   cisplatin resistance-associated overexpressed protei...
PRPF38B               0.092   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
PPIG                  0.092   peptidylprolyl isomerase G 
SFRS11                0.092   splicing factor, arginine/serine-rich 11 
AP3D1                 0.090   adaptor-related protein complex 3, delta 1 subunit ...
PRPF40A               0.090   formin binding protein 3 
ANKRD12               0.088   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.088   ankyrin repeat domain 12 isoform 1 
WDR87                 0.088   NYD-SP11 protein 
EIF5B                 0.086   eukaryotic translation initiation factor 5B 
NKAPL                 0.086   NFKB activating protein-like 
RBM25                 0.086   RNA binding motif protein 25 
TCOF1                 0.086   Treacher Collins-Franceschetti syndrome 1 isoform f...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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