Guide to the Human Genome
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Name: WDR60 Sequence: fasta or formatted (1066aa) NCBI GI: 155030242
Description:

WD repeat domain 60

Referenced in:

WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         58           2
 C cysteine            1.3         14           3
 D aspartate           7.7         82           3
 E glutamate           9.8        104           2
 F phenylalanine       3.3         35           1
 G glycine             5.3         56           2
 H histidine           3.5         37           2
 I isoleucine          2.9         31           2
 K lysine              7.7         82           2
 L leucine             8.6         92           3
 M methionine          1.0         11           1
 N asparagine          2.9         31           1
 P proline             4.3         46           2
 Q glutamine           4.6         49           2
 R arginine            9.4        100           3
 S serine              9.5        101           3
 T threonine           4.1         44           2
 V valine              5.7         61           3
 W tryptophan          1.7         18           2
 Y tyrosine            1.3         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 60 
LOC100286959          0.047   PREDICTED: hypothetical protein XP_002343921 
ZC3H13                0.039   zinc finger CCCH-type containing 13 
RBM25                 0.038   RNA binding motif protein 25 
LOC100133599          0.035   PREDICTED: hypothetical protein 
PRPF38B               0.035   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
SFRS12                0.035   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.035   splicing factor, arginine/serine-rich 12 isoform b [...
LOC100131202          0.035   PREDICTED: hypothetical protein 
PPIG                  0.033   peptidylprolyl isomerase G 
TCHH                  0.032   trichohyalin 
LOC100131202          0.031   PREDICTED: hypothetical protein 
LOC100133599          0.030   PREDICTED: hypothetical protein 
LOC283685             0.029   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CDC2L2                0.029   cell division cycle 2-like 2 isoform 4 
LOC100288837          0.028   PREDICTED: hypothetical protein XP_002343931, parti...
CDC2L1                0.028   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L2                0.028   cell division cycle 2-like 2 isoform 1 
LOC283685             0.028   PREDICTED: golgi autoantigen, golgin subfamily a-li...
RPGR                  0.026   retinitis pigmentosa GTPase regulator isoform C [Hom...
CDC2L1                0.026   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.026   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.026   cell division cycle 2-like 1 (PITSLRE proteins) isof...
LOC727832             0.026   golgi autoantigen, golgin subfamily a-like 
CDC2L1                0.026   cell division cycle 2-like 1 (PITSLRE proteins) isof...
SFRS4                 0.025   splicing factor, arginine/serine-rich 4 
LOC283767             0.025   golgi autoantigen, golgin subfamily a-like 
LOC100170229          0.025   hypothetical protein LOC100170229 
CALD1                 0.024   caldesmon 1 isoform 1 
DDX23                 0.024   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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