BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|93277122 RNA binding motif protein 4 [Homo sapiens] (364 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|93277122 RNA binding motif protein 4 [Homo sapiens] 734 0.0 gi|13899354 RNA binding motif protein 4B [Homo sapiens] 650 0.0 gi|5454064 RNA binding motif protein 14 [Homo sapiens] 140 1e-33 gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens] 83 4e-16 gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 ... 72 1e-12 gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [... 72 1e-12 gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ... 72 1e-12 gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 71 1e-12 gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 71 2e-12 gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 71 2e-12 gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 71 2e-12 gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 71 2e-12 gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 71 2e-12 gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 70 2e-12 gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 70 3e-12 gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 69 9e-12 gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens] 68 1e-11 gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens] 67 3e-11 gi|188219593 TIA1 protein isoform 1 [Homo sapiens] 67 3e-11 gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 67 3e-11 gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 67 3e-11 gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 66 6e-11 gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 66 6e-11 gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 65 1e-10 gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 65 1e-10 gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 65 1e-10 gi|224028246 non-POU domain containing, octamer-binding isoform ... 64 2e-10 gi|224028244 non-POU domain containing, octamer-binding isoform ... 64 2e-10 gi|34932414 non-POU domain containing, octamer-binding isoform 1... 64 2e-10 gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4... 64 2e-10 >gi|93277122 RNA binding motif protein 4 [Homo sapiens] Length = 364 Score = 734 bits (1894), Expect = 0.0 Identities = 364/364 (100%), Positives = 364/364 (100%) Query: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60 Query: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER Sbjct: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120 Query: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS 180 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS 180 Query: 181 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS 240 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS Sbjct: 181 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS 240 Query: 241 VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS 300 VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS Sbjct: 241 VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS 300 Query: 301 TSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRAR 360 TSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRAR Sbjct: 301 TSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRAR 360 Query: 361 YSAF 364 YSAF Sbjct: 361 YSAF 364 >gi|13899354 RNA binding motif protein 4B [Homo sapiens] Length = 359 Score = 650 bits (1676), Expect = 0.0 Identities = 326/365 (89%), Positives = 340/365 (93%), Gaps = 7/365 (1%) Query: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60 Query: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120 HGVNINVEASKNKSK STKLHVGNISPTCTN+ELRAKFEEYGPVIECDIVKDYAFVHMER Sbjct: 61 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 120 Query: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS 180 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP+DR+ Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 180 Query: 181 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAV-AAAAA 239 GRVAD TEQYNEQYGAVRTPYTM YG+S+YYN+AYGALD YYKR R RSYEAV AAAAA Sbjct: 181 GRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDAYGALD-YYKRYR-VRSYEAVAAAAAA 238 Query: 240 SVYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAA 299 S YNYAEQT+S LPQVQ+T + SHL STS+DPYDRHLLP SGAAAT+AA AAAA A Sbjct: 239 SAYNYAEQTMSHLPQVQSTTVTSHLNSTSVDPYDRHLLPNSGAAATSAAMAAAA----AT 294 Query: 300 STSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRA 359 ++SYYGRDRSPLRRA A +PTVGEGYGYG ESELSQASAA RNSLYDMARYEREQY DRA Sbjct: 295 TSSYYGRDRSPLRRAAAMLPTVGEGYGYGPESELSQASAATRNSLYDMARYEREQYVDRA 354 Query: 360 RYSAF 364 RYSAF Sbjct: 355 RYSAF 359 >gi|5454064 RNA binding motif protein 14 [Homo sapiens] Length = 669 Score = 140 bits (354), Expect = 1e-33 Identities = 72/162 (44%), Positives = 106/162 (65%), Gaps = 2/162 (1%) Query: 2 VKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60 +K+F+GN+ + T +E+ +LF YG V+ C ++K + FVH+ + A AI LH ++L Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60 Query: 61 H-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119 G + VE S+ + + K+ VGN+S CT++ELR+ FE G VIECD+VKDYAFVHME Sbjct: 61 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME 120 Query: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 161 + DA AI L+ E +GKR++V+LST + PG+ QSG Sbjct: 121 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSG 162 Score = 30.8 bits (68), Expect = 2.0 Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 24/177 (13%) Query: 204 SYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAASVYNYAEQTLSQLPQVQNTAMASH 263 SYG+ ++YGA A RAA S AA+S+ +Y Q S Q +++A Sbjct: 340 SYGNQ---PSSYGAQAASSYGVRAAASSYNTQGAASSLGSYGAQAASYGAQSAASSLAYG 396 Query: 264 LTSTSLD-----PYDRHLLP-TSGAAATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAP 317 + S + Y+ P + AA+ ++ AA A A + +Y + + +AT P Sbjct: 397 AQAASYNAQPSASYNAQSAPYAAQQAASYSSQPAAYVAQPATAAAYASQPAAYAAQATTP 456 Query: 318 ----------VPTVGEGYGYGHESELS-----QASAAARNSLYDMARYEREQYADRA 359 V T YG LS Q++AAA S A Y + A A Sbjct: 457 MAGSYGAQPVVQTQLNSYGAQASMGLSGSYGAQSAAAATGSYGAAAAYGAQPSATLA 513 >gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens] Length = 524 Score = 82.8 bits (203), Expect = 4e-16 Identities = 96/350 (27%), Positives = 141/350 (40%), Gaps = 65/350 (18%) Query: 3 KLFIGNLPREATEQEIRSLFEQYGKVLE-----------CDIIKNYGFVHIEDKT--AAE 49 +LFIG +P+ +EI E+ KV E D +KN GF +E ++ AA Sbjct: 152 RLFIGGIPKMKKREEI---LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 208 Query: 50 DAIRNL---------HHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEE 100 A R L H + ++ ++ +T L+V N+ T ++ F + Sbjct: 209 MARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQ 268 Query: 101 YGP--VIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158 + P V ++DYAFVH EDAV A+ L+ TE +G + V L+ Sbjct: 269 FNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP---------- 318 Query: 159 QSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGAL 218 KE +S+ R G A+ +Q + Y PYT++ YY Y AL Sbjct: 319 ------VDKE-QYSRYQKAARGGGAAEAAQQPSYVYSC--DPYTLA-----YYGYPYNAL 364 Query: 219 DAYYKRCRAARSYEAVAAAAASVYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLP 278 R Y A A Y+ + P++ H + P P Sbjct: 365 ------IGPNRDYFVKVAIPAIGAQYSMFPAAPAPKMIEDGKI-HTVEHMISPIAVQPDP 417 Query: 279 TSGAAATAAAAAAAAAAVTAAST--SYYGRDRSPLRRATAP----VPTVG 322 S AAA AAAAAAAAA + ST + GR +P+ AP +PT G Sbjct: 418 ASAAAAAAAAAAAAAAVIPTVSTPPPFQGRPITPV-YTVAPNVQRIPTAG 466 Score = 40.0 bits (92), Expect = 0.003 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 36/154 (23%) Query: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNL 55 ++F+G +PR+ E E+ +FE G++ E ++ + Y FV K A+ A+R L Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVREL 131 Query: 56 HHY-----KLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIE--CD 108 ++Y +L GV +V+ + +L +G I +E+ EE V E D Sbjct: 132 NNYEIRPGRLLGVCCSVD--------NCRLFIGGIPKMKKREEI---LEEIAKVTEGVLD 180 Query: 109 IV-----------KDYAFVHMERAEDAVEAIRGL 131 ++ + +AFV E A A R L Sbjct: 181 VIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 214 Score = 28.5 bits (62), Expect = 9.9 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Query: 79 KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGL 131 ++ VG I EL FE G + E ++ D YAFV +A A+R L Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVREL 131 Query: 132 DNTEFQGKRM 141 +N E + R+ Sbjct: 132 NNYEIRPGRL 141 >gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 [Homo sapiens] Length = 486 Score = 71.6 bits (174), Expect = 1e-12 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 16/126 (12%) Query: 2 VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG----------FVHIEDKTAAEDA 51 +K+F+G +PR +E+++R LFEQYG V E +++++ FV + AA +A Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75 Query: 52 IRNLHHYKL-----HGVNIN-VEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVI 105 LH+ K+ H + + ++ KN + KL +G IS CT ++R F +G + Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135 Query: 106 ECDIVK 111 EC I++ Sbjct: 136 ECRILR 141 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/82 (26%), Positives = 49/82 (59%), Gaps = 10/82 (12%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVL--------ECDIIKNYGFVHIEDKTAAEDAIRNL 55 LFI +LP+E +Q++ +F +G V+ + ++ K +GFV ++ +A+ AI+++ Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462 Query: 56 HHYK--LHGVNINVEASKNKSK 75 + ++ + + + ++ SKN SK Sbjct: 463 NGFQIGMKRLKVQLKRSKNDSK 484 Score = 35.0 bits (79), Expect = 0.11 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%) Query: 79 KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA----------FVHMERAEDAVEAI 128 K+ VG + T + K+LR FE+YG V E ++++D + FV + A+EA Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76 Query: 129 RGLDN 133 L N Sbjct: 77 NALHN 81 Score = 28.5 bits (62), Expect = 9.9 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 8/99 (8%) Query: 64 NINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAF 115 +I S+ + L + ++ +++L F +G V+ + D + F Sbjct: 387 SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF 446 Query: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAP 154 V + A AI+ ++ + KR+ VQL S+ + P Sbjct: 447 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKP 485 >gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [Homo sapiens] Length = 482 Score = 71.6 bits (174), Expect = 1e-12 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 16/126 (12%) Query: 2 VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG----------FVHIEDKTAAEDA 51 +K+F+G +PR +E+++R LFEQYG V E +++++ FV + AA +A Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75 Query: 52 IRNLHHYKL-----HGVNIN-VEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVI 105 LH+ K+ H + + ++ KN + KL +G IS CT ++R F +G + Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135 Query: 106 ECDIVK 111 EC I++ Sbjct: 136 ECRILR 141 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/82 (26%), Positives = 49/82 (59%), Gaps = 10/82 (12%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVL--------ECDIIKNYGFVHIEDKTAAEDAIRNL 55 LFI +LP+E +Q++ +F +G V+ + ++ K +GFV ++ +A+ AI+++ Sbjct: 399 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 458 Query: 56 HHYK--LHGVNINVEASKNKSK 75 + ++ + + + ++ SKN SK Sbjct: 459 NGFQIGMKRLKVQLKRSKNDSK 480 Score = 35.0 bits (79), Expect = 0.11 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%) Query: 79 KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA----------FVHMERAEDAVEAI 128 K+ VG + T + K+LR FE+YG V E ++++D + FV + A+EA Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76 Query: 129 RGLDN 133 L N Sbjct: 77 NALHN 81 Score = 28.5 bits (62), Expect = 9.9 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 8/99 (8%) Query: 64 NINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAF 115 +I S+ + L + ++ +++L F +G V+ + D + F Sbjct: 383 SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF 442 Query: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAP 154 V + A AI+ ++ + KR+ VQL S+ + P Sbjct: 443 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKP 481 >gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 [Homo sapiens] Length = 483 Score = 71.6 bits (174), Expect = 1e-12 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 16/126 (12%) Query: 2 VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG----------FVHIEDKTAAEDA 51 +K+F+G +PR +E+++R LFEQYG V E +++++ FV + AA +A Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75 Query: 52 IRNLHHYKL-----HGVNIN-VEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVI 105 LH+ K+ H + + ++ KN + KL +G IS CT ++R F +G + Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135 Query: 106 ECDIVK 111 EC I++ Sbjct: 136 ECRILR 141 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/82 (26%), Positives = 49/82 (59%), Gaps = 10/82 (12%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVL--------ECDIIKNYGFVHIEDKTAAEDAIRNL 55 LFI +LP+E +Q++ +F +G V+ + ++ K +GFV ++ +A+ AI+++ Sbjct: 400 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 459 Query: 56 HHYK--LHGVNINVEASKNKSK 75 + ++ + + + ++ SKN SK Sbjct: 460 NGFQIGMKRLKVQLKRSKNDSK 481 Score = 35.0 bits (79), Expect = 0.11 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%) Query: 79 KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA----------FVHMERAEDAVEAI 128 K+ VG + T + K+LR FE+YG V E ++++D + FV + A+EA Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76 Query: 129 RGLDN 133 L N Sbjct: 77 NALHN 81 Score = 28.5 bits (62), Expect = 9.9 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 8/99 (8%) Query: 64 NINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAF 115 +I S+ + L + ++ +++L F +G V+ + D + F Sbjct: 384 SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF 443 Query: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAP 154 V + A AI+ ++ + KR+ VQL S+ + P Sbjct: 444 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKP 482 >gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] Length = 636 Score = 71.2 bits (173), Expect = 1e-12 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 23/163 (14%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHH 57 +FI NL + + + F +G +L C ++ K YGFVH E + AAE AI ++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160 Query: 58 YKLHGVNINVEASKN----------KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIEC 107 L+ + V K+ ++K T +++ N ++ L+ F ++GP + Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220 Query: 108 DIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143 ++ D + FV ER EDA +A+ ++ E GK+++V Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263 Score = 52.4 bits (124), Expect = 6e-07 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 20/176 (11%) Query: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAI 52 M L++G+L + TE + F G +L + ++ Y +V+ + AE A+ Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69 Query: 53 RNLHHYKLHGVNINVEASKNKSKTSTKLHVGNI-----SPTCTNKELRAKFEEYGPVIEC 107 ++ + G + + S+ + + K VGNI + NK L F +G ++ C Sbjct: 70 DTMNFDVIKGKPVRIMWSQ-RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128 Query: 108 DIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157 +V K Y FVH E E A AI ++ +++ V SR +G Sbjct: 129 KVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184 Score = 47.4 bits (111), Expect = 2e-05 Identities = 76/376 (20%), Positives = 134/376 (35%), Gaps = 105/376 (27%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLH 56 ++I N + ++ ++ LF ++G L ++ K +GFV E A+ A+ ++ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 57 HYKLHGVNINVEASKNKSKTSTK--------------------LHVGNISPTCTNKELRA 96 +L+G I V ++ K + T+ L+V N+ ++ LR Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312 Query: 97 KFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 150 +F +G + ++ K + FV E+A +A+ ++ K ++V L+ Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR-- 370 Query: 151 RTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVR-------TPYTM 203 + R A LT QY ++ +VR PY Sbjct: 371 ----------------------------KEERQAHLTNQYMQRMASVRAVPNPVINPYQP 402 Query: 204 SYGDSLYYNNAYGALD---AYYKRCRAARSYEAV--------------------AAAAAS 240 + S Y+ A AYY + A+ + AA Sbjct: 403 A-PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRP 461 Query: 241 VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS 300 ++ SQ+P+V +T ++ TST T G AAAAAA A T Sbjct: 462 PFSTMRPASSQVPRVMSTQRVAN-TSTQ----------TMGPRPAAAAAAATPAVRTVPQ 510 Query: 301 TSYYGRDRSPLRRATA 316 Y R+P + A Sbjct: 511 YKYAAGVRNPQQHLNA 526 >gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] Length = 380 Score = 70.9 bits (172), Expect = 2e-12 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 18/153 (11%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55 L + LP+ T++E RSLF G++ C ++++ YGFV+ D AE AI L Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107 Query: 56 HHYKLHGVNINVEASKNKSKT--STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD- 112 + +L I V ++ S + L+V + T T KEL F +YG +I I+ D Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 167 Query: 113 -------YAFVHMERAEDAVEAIRGLDNTEFQG 138 F+ ++ +A EAI+GL+ + G Sbjct: 168 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200 Score = 47.4 bits (111), Expect = 2e-05 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 L++ LP+ T++E+ LF QYG+++ I+ + GF+ + + AE+AI+ L Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193 Query: 56 HHYKLHGVN--INVEASKNKSKTSTK 79 + K G I V+ + N S+ S++ Sbjct: 194 NGQKPSGATEPITVKFANNPSQKSSQ 219 Score = 33.9 bits (76), Expect = 0.23 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%) Query: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127 + T L V + T +E R+ F G + C +V+D Y FV+ +DA +A Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103 Query: 128 IRGLDNTEFQGKRMHV 143 I L+ Q K + V Sbjct: 104 INTLNGLRLQTKTIKV 119 Score = 32.3 bits (72), Expect = 0.68 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 +F+ NL ++ E + LF +G V +I K +GFV + + A AI +L Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 56 HHYKLHGVNINVEASKNKSKTS 77 + Y+L + V NK+ S Sbjct: 359 NGYRLGDRVLQVSFKTNKAHKS 380 >gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] Length = 369 Score = 70.9 bits (172), Expect = 2e-12 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 18/153 (11%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55 L + LP+ T++E RSLF G++ C ++++ YGFV+ D AE AI L Sbjct: 51 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 110 Query: 56 HHYKLHGVNINVEASKNKSKT--STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD- 112 + +L I V ++ S + L+V + T T KEL F +YG +I I+ D Sbjct: 111 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 170 Query: 113 -------YAFVHMERAEDAVEAIRGLDNTEFQG 138 F+ ++ +A EAI+GL+ + G Sbjct: 171 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 203 Score = 47.4 bits (111), Expect = 2e-05 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 L++ LP+ T++E+ LF QYG+++ I+ + GF+ + + AE+AI+ L Sbjct: 137 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 196 Query: 56 HHYKLHGVN--INVEASKNKSKTSTK 79 + K G I V+ + N S+ S++ Sbjct: 197 NGQKPSGATEPITVKFANNPSQKSSQ 222 Score = 33.9 bits (76), Expect = 0.23 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%) Query: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127 + T L V + T +E R+ F G + C +V+D Y FV+ +DA +A Sbjct: 47 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 106 Query: 128 IRGLDNTEFQGKRMHV 143 I L+ Q K + V Sbjct: 107 INTLNGLRLQTKTIKV 122 Score = 32.3 bits (72), Expect = 0.68 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 +F+ NL ++ E + LF +G V +I K +GFV + + A AI +L Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347 Query: 56 HHYKLHGVNINVEASKNKSKTS 77 + Y+L + V NK+ S Sbjct: 348 NGYRLGDRVLQVSFKTNKAHKS 369 >gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] Length = 366 Score = 70.9 bits (172), Expect = 2e-12 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 18/153 (11%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55 L + LP+ T++E RSLF G++ C ++++ YGFV+ D AE AI L Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107 Query: 56 HHYKLHGVNINVEASKNKSKT--STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD- 112 + +L I V ++ S + L+V + T T KEL F +YG +I I+ D Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 167 Query: 113 -------YAFVHMERAEDAVEAIRGLDNTEFQG 138 F+ ++ +A EAI+GL+ + G Sbjct: 168 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200 Score = 47.4 bits (111), Expect = 2e-05 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 L++ LP+ T++E+ LF QYG+++ I+ + GF+ + + AE+AI+ L Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193 Query: 56 HHYKLHGVN--INVEASKNKSKTSTK 79 + K G I V+ + N S+ S++ Sbjct: 194 NGQKPSGATEPITVKFANNPSQKSSQ 219 Score = 33.9 bits (76), Expect = 0.23 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%) Query: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127 + T L V + T +E R+ F G + C +V+D Y FV+ +DA +A Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103 Query: 128 IRGLDNTEFQGKRMHV 143 I L+ Q K + V Sbjct: 104 INTLNGLRLQTKTIKV 119 Score = 32.3 bits (72), Expect = 0.68 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 +F+ NL ++ E + LF +G V +I K +GFV + + A AI +L Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344 Query: 56 HHYKLHGVNINVEASKNKSKTS 77 + Y+L + V NK+ S Sbjct: 345 NGYRLGDRVLQVSFKTNKAHKS 366 >gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] Length = 383 Score = 70.9 bits (172), Expect = 2e-12 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 18/153 (11%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55 L + LP+ T++E RSLF G++ C ++++ YGFV+ D AE AI L Sbjct: 65 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 124 Query: 56 HHYKLHGVNINVEASKNKSKT--STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD- 112 + +L I V ++ S + L+V + T T KEL F +YG +I I+ D Sbjct: 125 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 184 Query: 113 -------YAFVHMERAEDAVEAIRGLDNTEFQG 138 F+ ++ +A EAI+GL+ + G Sbjct: 185 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 217 Score = 47.4 bits (111), Expect = 2e-05 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 L++ LP+ T++E+ LF QYG+++ I+ + GF+ + + AE+AI+ L Sbjct: 151 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 210 Query: 56 HHYKLHGVN--INVEASKNKSKTSTK 79 + K G I V+ + N S+ S++ Sbjct: 211 NGQKPSGATEPITVKFANNPSQKSSQ 236 Score = 33.9 bits (76), Expect = 0.23 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%) Query: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127 + T L V + T +E R+ F G + C +V+D Y FV+ +DA +A Sbjct: 61 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 120 Query: 128 IRGLDNTEFQGKRMHV 143 I L+ Q K + V Sbjct: 121 INTLNGLRLQTKTIKV 136 Score = 32.3 bits (72), Expect = 0.68 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 +F+ NL ++ E + LF +G V +I K +GFV + + A AI +L Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361 Query: 56 HHYKLHGVNINVEASKNKSKTS 77 + Y+L + V NK+ S Sbjct: 362 NGYRLGDRVLQVSFKTNKAHKS 383 >gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] Length = 366 Score = 70.9 bits (172), Expect = 2e-12 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 18/153 (11%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55 L + LP+ T++E RSLF G++ C ++++ YGFV+ D AE AI L Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107 Query: 56 HHYKLHGVNINVEASKNKSKT--STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD- 112 + +L I V ++ S + L+V + T T KEL F +YG +I I+ D Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 167 Query: 113 -------YAFVHMERAEDAVEAIRGLDNTEFQG 138 F+ ++ +A EAI+GL+ + G Sbjct: 168 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200 Score = 47.4 bits (111), Expect = 2e-05 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 L++ LP+ T++E+ LF QYG+++ I+ + GF+ + + AE+AI+ L Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193 Query: 56 HHYKLHGVN--INVEASKNKSKTSTK 79 + K G I V+ + N S+ S++ Sbjct: 194 NGQKPSGATEPITVKFANNPSQKSSQ 219 Score = 33.9 bits (76), Expect = 0.23 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%) Query: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127 + T L V + T +E R+ F G + C +V+D Y FV+ +DA +A Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103 Query: 128 IRGLDNTEFQGKRMHV 143 I L+ Q K + V Sbjct: 104 INTLNGLRLQTKTIKV 119 Score = 32.3 bits (72), Expect = 0.68 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 +F+ NL ++ E + LF +G V +I K +GFV + + A AI +L Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344 Query: 56 HHYKLHGVNINVEASKNKSKTS 77 + Y+L + V NK+ S Sbjct: 345 NGYRLGDRVLQVSFKTNKAHKS 366 >gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] Length = 631 Score = 70.5 bits (171), Expect = 2e-12 Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 23/163 (14%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHH 57 +F+ NL + + + +G +L C+++ K YGFVH E AAE AI+ ++ Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160 Query: 58 YKLHGVNINVEASKNKSKTSTKL----------HVGNISPTCTNKELRAKFEEYGPVIEC 107 L+G + V K++ + +L ++ N ++ L+ F ++GP + Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220 Query: 108 DIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143 ++ D + FV ER EDA +A+ ++ E GK+++V Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263 Score = 54.3 bits (129), Expect = 2e-07 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 20/173 (11%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIK--------NYGFVHIEDKTAAEDAIRNL 55 L++G+L + TE + F G +L I + NY +V+ + AE A+ + Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72 Query: 56 HHYKLHGVNINV-----EASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV 110 + + G + + + S KS + V N+ + NK L +G ++ C++V Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN-IFVKNLDKSINNKALYDTVSAFGNILSCNVV 131 Query: 111 ------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157 K Y FVH E E A AI+ ++ G+++ V SR +G Sbjct: 132 CDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELG 184 Score = 51.2 bits (121), Expect = 1e-06 Identities = 72/369 (19%), Positives = 132/369 (35%), Gaps = 96/369 (26%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLH 56 ++I N + ++ ++ LF ++G L ++ K +GFV E A+ A+ ++ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 57 HYKLHGVNINVEASKNKSKTSTK--------------------LHVGNISPTCTNKELRA 96 +L+G I V ++ K + T+ L+V N+ ++ LR Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312 Query: 97 KFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 150 F +G + ++ K + FV E+A +A+ ++ K ++V L+ Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR-- 370 Query: 151 RTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210 + R A LT +Y ++ +VR S Y Sbjct: 371 ----------------------------KEERQAYLTNEYMQRMASVRAVPNQRAPPSGY 402 Query: 211 YNNAYGALD---AYYKRCRAAR-------------------SYEAVAAAAASV-YNYAEQ 247 + A AYY + AR A+ A V ++ Sbjct: 403 FMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFSTMRP 462 Query: 248 TLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAASTSYYGRD 307 SQ+P+V +T ++ ++ ++ P A AAAAAA A T Y Sbjct: 463 ASSQVPRVMSTQRVANTSTQTVGP----------RPAAAAAAAATPAVRTVPRYKYAAGV 512 Query: 308 RSPLRRATA 316 R+P + A Sbjct: 513 RNPQQHRNA 521 Score = 38.5 bits (88), Expect = 0.010 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%) Query: 74 SKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAV 125 S + L+VG++ P T L KF GP++ I +D YA+V+ + +DA Sbjct: 7 SYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAE 66 Query: 126 EAIRGLDNTEFQGKRMHVQLS 146 A+ ++ +GK + + S Sbjct: 67 HALDTMNFDVIKGKPVRIMWS 87 >gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) [Homo sapiens] Length = 359 Score = 70.1 bits (170), Expect = 3e-12 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 18/153 (11%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55 L + LP+ T++E++SLF G++ C ++++ YGFV+ D AE AI L Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 56 HHYKLHGVNINVEASKNKSKT--STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD- 112 + +L I V ++ S + L+V + T T KEL F +YG +I I+ D Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 160 Query: 113 -------YAFVHMERAEDAVEAIRGLDNTEFQG 138 F+ ++ +A EAI+GL+ + G Sbjct: 161 VTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 193 Score = 45.4 bits (106), Expect = 8e-05 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 10/86 (11%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 L++ LP+ T++E+ LF QYG+++ I+ + GF+ + + AE+AI+ L Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186 Query: 56 HHYKLHGVN--INVEASKNKSKTSTK 79 + K G I V+ + N S+ + + Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQ 212 Score = 36.6 bits (83), Expect = 0.036 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 8/82 (9%) Query: 70 SKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERA 121 S N + T L V + T +EL++ F G + C +V+D Y FV+ Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90 Query: 122 EDAVEAIRGLDNTEFQGKRMHV 143 +DA +AI L+ Q K + V Sbjct: 91 KDAEKAINTLNGLRLQTKTIKV 112 Score = 32.3 bits (72), Expect = 0.68 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 8/79 (10%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 +F+ NL +A E + +F +G V +I K +GFV + + A AI +L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 56 HHYKLHGVNINVEASKNKS 74 + Y+L + V NK+ Sbjct: 338 NGYRLGDRVLQVSFKTNKT 356 >gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] Length = 465 Score = 68.6 bits (166), Expect = 9e-12 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 70/319 (21%) Query: 2 VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIR 53 +KLF+G +PR E++++ +FEQ+G++ E +IK+ F+ + +A A Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66 Query: 54 NLHHYK-LHGVN--INVEASKNKSK-TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDI 109 LH K L G+N I V+ + ++S+ KL VG + T++++R FE +G + EC + Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126 Query: 110 V-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGC 162 + K AFV + +A AI L ++ RT PG Sbjct: 127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSS----------------RTLPGASSS--- 167 Query: 163 YRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYY 222 K KE + R +VA + +P + +G AY Sbjct: 168 -LVVKFADTEKERGLRRMQQVATQLGMF--------SPIALQFG-------------AYS 205 Query: 223 KRCRAARSYEAVAAAAASVYNYAEQTLSQLPQVQNTAM--ASHLTSTSLDPYDRHLLPTS 280 +A +A AA S Y T++ + Q+Q+ A A+ L +T + P+S Sbjct: 206 AYTQALMQQQAALVAAHSAYLSPMATMAAV-QMQHMAAINANGLIATP-------ITPSS 257 Query: 281 GAAATAAAAAAAAAAVTAA 299 G + A AA +A+ AA Sbjct: 258 GTSTPPAIAATPVSAIPAA 276 Score = 38.1 bits (87), Expect = 0.012 Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 +FI +LP+E T+ EI +F +G V+ + K +GFV ++ +A+ AI+ + Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441 Query: 56 HHYKLHGVNINVEASKNK 73 + +++ + V+ + K Sbjct: 442 NGFQIGMKRLKVQLKRPK 459 Score = 32.0 bits (71), Expect = 0.89 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 73 KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD-YAFVH 117 K + KL VG I K+L+ FE++G + E ++KD Y +H Sbjct: 2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLH 47 >gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens] Length = 593 Score = 67.8 bits (164), Expect = 1e-11 Identities = 99/408 (24%), Positives = 149/408 (36%), Gaps = 112/408 (27%) Query: 3 KLFIGNLPREATEQEIRSLFEQYGKVLE-----------CDIIKNYGFVHIEDKT--AAE 49 +LFIG +P+ +EI E+ KV E D +KN GF +E ++ AA Sbjct: 152 RLFIGGIPKMKKREEI---LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 208 Query: 50 DAIRNL---------HHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEE 100 A R L H + ++ ++ +T L+V N+ T ++ F + Sbjct: 209 MARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQ 268 Query: 101 YGP--VIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158 + P V ++DYAFVH EDAV A+ L+ TE +G + V L+ Sbjct: 269 FNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP---------- 318 Query: 159 QSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGAL 218 KE +S+ R G A+ +Q + Y PYT++Y YN G Sbjct: 319 ------VDKE-QYSRYQKAARGGGAAEAAQQPSYVYSC--DPYTLAYY-GYPYNALIGPN 368 Query: 219 DAYYKRCRAAR----------------SYEAVAAAAASVYN-------------YAEQTL 249 Y+ + + R SY +A +Y+ Y Sbjct: 369 RDYFVKAGSIRGRGRGAAGNRAPGPRGSYLGGYSAGRGIYSRYHEGKGKQQEKGYELVPN 428 Query: 250 SQLPQVQNTAMAS-----------------------------HLTSTSLDPYDRHLLPTS 280 ++P V A+ H + P P S Sbjct: 429 LEIPTVNPVAIKPGTVAIPAIGAQYSMFPAAPAPKMIEDGKIHTVEHMISPIAVQPDPAS 488 Query: 281 GAAATAAAAAAAAAAVTAAST--SYYGRDRSPLRRATAP----VPTVG 322 AAA AAAAAAAAA + ST + GR +P+ AP +PT G Sbjct: 489 AAAAAAAAAAAAAAVIPTVSTPPPFQGRPITPV-YTVAPNVQRIPTAG 535 Score = 40.0 bits (92), Expect = 0.003 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 36/154 (23%) Query: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNL 55 ++F+G +PR+ E E+ +FE G++ E ++ + Y FV K A+ A+R L Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVREL 131 Query: 56 HHY-----KLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIE--CD 108 ++Y +L GV +V+ + +L +G I +E+ EE V E D Sbjct: 132 NNYEIRPGRLLGVCCSVD--------NCRLFIGGIPKMKKREEI---LEEIAKVTEGVLD 180 Query: 109 IV-----------KDYAFVHMERAEDAVEAIRGL 131 ++ + +AFV E A A R L Sbjct: 181 VIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 214 Score = 28.5 bits (62), Expect = 9.9 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Query: 79 KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGL 131 ++ VG I EL FE G + E ++ D YAFV +A A+R L Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVREL 131 Query: 132 DNTEFQGKRM 141 +N E + R+ Sbjct: 132 NNYEIRPGRL 141 >gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens] Length = 221 Score = 67.0 bits (162), Expect = 3e-11 Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 27/201 (13%) Query: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG-----FVHIEDKTAAEDAIRNLHH 57 ++++GNLP + E+++ LF +YG++ E ++ +G FV ED AEDAI + Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74 Query: 58 YKLHGVNINVEASKN----------------KSKTSTKLHVGNISPTCTNKELRAKFEEY 101 Y + VE + ++ ++ V + P+ + ++L+ E Sbjct: 75 YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREA 134 Query: 102 GPVIECDIVKD-YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQS 160 G V D+ KD V R ED A+R LD+T+F R H + TS +R P Sbjct: 135 GDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF---RSH-EGETSYIRVYPERSTSY 190 Query: 161 GCYRCGKEGHWSKECPIDRSG 181 G Y + G ++ P G Sbjct: 191 G-YSRSRSGSRGRDSPYQSRG 210 >gi|188219593 TIA1 protein isoform 1 [Homo sapiens] Length = 375 Score = 66.6 bits (161), Expect = 3e-11 Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 25/214 (11%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN------YGFVHIEDKTAAEDAIRNLHH 57 L++GNL R+ TE I LF Q G C +I + Y FV + A A+ ++ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68 Query: 58 YKLHGVNINVE----ASKNKSKTSTKLHV--GNISPTCTNKELRAKFEEYGPVIECDIVK 111 K+ G + V S K TS HV G++SP T ++++A F +G + + +VK Sbjct: 69 RKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK 128 Query: 112 D--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCY 163 D Y FV DA AI+ + G+++ +T R AP +S Sbjct: 129 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYESNTK 187 Query: 164 RCGKEGHWSK----ECPIDRSGRVADLTEQYNEQ 193 + + ++ C + G + LTEQ Q Sbjct: 188 QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQ 221 Score = 55.8 bits (133), Expect = 6e-08 Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 34/169 (20%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55 +F+G+L E T ++I++ F +G++ + ++K+ YGFV +K AE+AI+ + Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156 Query: 56 HHYKLHGVNINVE-------ASKNKSKTSTK-----------------LHVGNISPTCTN 91 L G I A K+ +++TK ++ G ++ T Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 216 Query: 92 KELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTEFQG 138 + +R F +G ++E + D Y+FV E A AI ++ T +G Sbjct: 217 QLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEG 265 >gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] Length = 367 Score = 66.6 bits (161), Expect = 3e-11 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 18/147 (12%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55 L + LP+ T+ E +SLF G + C ++++ YGFV+ D A+ AI L Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100 Query: 56 HHYKLHGVNINVEASKNKSKT--STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD- 112 + KL I V ++ S + L+V + T + KE+ F +YG +I I+ D Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQ 160 Query: 113 -------YAFVHMERAEDAVEAIRGLD 132 F+ ++ +A EAI+GL+ Sbjct: 161 VTGVSRGVGFIRFDKRIEAEEAIKGLN 187 Score = 42.0 bits (97), Expect = 9e-04 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 10/82 (12%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 L++ LP+ +++E+ LF QYG+++ I+ + GF+ + + AE+AI+ L Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186 Query: 56 HHYKLHGV--NINVEASKNKSK 75 + K G I V+ + N S+ Sbjct: 187 NGQKPLGAAEPITVKFANNPSQ 208 Score = 32.3 bits (72), Expect = 0.68 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 +F+ NL EA E + LF +G V +I K +GFV + + A AI +L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 56 HHYKL 60 + Y+L Sbjct: 346 NGYRL 350 Score = 29.3 bits (64), Expect = 5.8 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 8/82 (9%) Query: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGL 131 + V N+SP L F +G V +++D + FV M ++A AI L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 132 DNTEFQGKRMHVQLSTSRLRTA 153 + + + V TS+ A Sbjct: 346 NGYRLGERVLQVSFKTSKQHKA 367 >gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] Length = 360 Score = 66.6 bits (161), Expect = 3e-11 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 18/147 (12%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55 L + LP+ T+ E +SLF G + C ++++ YGFV+ D A+ AI L Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100 Query: 56 HHYKLHGVNINVEASKNKSKT--STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD- 112 + KL I V ++ S + L+V + T + KE+ F +YG +I I+ D Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQ 160 Query: 113 -------YAFVHMERAEDAVEAIRGLD 132 F+ ++ +A EAI+GL+ Sbjct: 161 VTGVSRGVGFIRFDKRIEAEEAIKGLN 187 Score = 42.0 bits (97), Expect = 9e-04 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 10/82 (12%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 L++ LP+ +++E+ LF QYG+++ I+ + GF+ + + AE+AI+ L Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186 Query: 56 HHYKLHGV--NINVEASKNKSK 75 + K G I V+ + N S+ Sbjct: 187 NGQKPLGAAEPITVKFANNPSQ 208 Score = 32.3 bits (72), Expect = 0.68 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 +F+ NL EA E + LF +G V +I K +GFV + + A AI +L Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 56 HHYKL 60 + Y+L Sbjct: 339 NGYRL 343 Score = 29.3 bits (64), Expect = 5.8 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 8/82 (9%) Query: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGL 131 + V N+SP L F +G V +++D + FV M ++A AI L Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 132 DNTEFQGKRMHVQLSTSRLRTA 153 + + + V TS+ A Sbjct: 339 NGYRLGERVLQVSFKTSKQHKA 360 >gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] Length = 494 Score = 65.9 bits (159), Expect = 6e-11 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 29/172 (16%) Query: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60 M +++IG L +A E+++ F+ YGK+LE D+ YGFV +D A+DA+ L+ L Sbjct: 1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL 60 Query: 61 HGVNINVEASKN--------------------------KSKTSTKLHVGNISPTCTNKEL 94 G + VE ++ ++T +L V N+S C+ ++L Sbjct: 61 CGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDL 120 Query: 95 RAKFEEYGPVIECDI---VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143 + + G V D K+ + D A+ LD TE G+++ + Sbjct: 121 KDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172 Score = 43.9 bits (102), Expect = 2e-04 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 79 KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 138 ++++G +S +++ F+ YG ++E D+ Y FV + DA +A+ L+ + G Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62 Query: 139 KRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSG 181 +R+ V+ + R G Y G+ G+ + D+ G Sbjct: 63 ERVIVEHARGPRR--------DGSYGSGRSGYGYRRSGRDKYG 97 >gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] Length = 238 Score = 65.9 bits (159), Expect = 6e-11 Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 11/109 (10%) Query: 78 TKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNT 134 TK++VGN+ EL F YGP+ I ++ +AFV E DA +A+RGLD Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70 Query: 135 EFQGKRMHVQLST-----SRLRTAPG---MGDQSGCYRCGKEGHWSKEC 175 G R+ V+LST SR P CY CG++GH++ +C Sbjct: 71 VICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119 Score = 43.1 bits (100), Expect = 4e-04 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%) Query: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN---YGFVHIEDKTAAEDAIRNLHHYK 59 K+++GNL A + E+ F YG + I +N + FV ED AEDA+R L Sbjct: 12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 71 Query: 60 LHGVNINVEASKNKSKTS 77 + G + VE S + S Sbjct: 72 ICGSRVRVELSTGMPRRS 89 >gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo sapiens] Length = 631 Score = 64.7 bits (156), Expect = 1e-10 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 23/163 (14%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHH 57 +FI NL + + + F +G +L C ++ K Y FVH E + AA+ AI ++ Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160 Query: 58 YKLHGVNINVEASKN----------KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIEC 107 L+ + V K+ K+K T +++ N ++ L+ F ++G + Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220 Query: 108 DIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143 +++D + FV E+ EDA +A+ ++ E GK + V Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263 Score = 54.7 bits (130), Expect = 1e-07 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 20/176 (11%) Query: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAI 52 M L++G+L + TE + F G VL + ++ Y +V+ + AE A+ Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69 Query: 53 RNLHHYKLHGVNINVEASKNKSKTSTKLHVGNI-----SPTCTNKELRAKFEEYGPVIEC 107 ++ + G I + S+ + + K VGN+ + NK L F +G ++ C Sbjct: 70 DTMNFDVIKGKPIRIMWSQ-RDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128 Query: 108 DIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157 +V K YAFVH E E A +AI ++ +++ V SR +G Sbjct: 129 KVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184 >gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo sapiens] Length = 644 Score = 64.7 bits (156), Expect = 1e-10 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 23/163 (14%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHH 57 +FI NL + + + F +G +L C ++ K Y FVH E + AA+ AI ++ Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160 Query: 58 YKLHGVNINVEASKN----------KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIEC 107 L+ + V K+ K+K T +++ N ++ L+ F ++G + Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220 Query: 108 DIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143 +++D + FV E+ EDA +A+ ++ E GK + V Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263 Score = 54.7 bits (130), Expect = 1e-07 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 20/176 (11%) Query: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAI 52 M L++G+L + TE + F G VL + ++ Y +V+ + AE A+ Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69 Query: 53 RNLHHYKLHGVNINVEASKNKSKTSTKLHVGNI-----SPTCTNKELRAKFEEYGPVIEC 107 ++ + G I + S+ + + K VGN+ + NK L F +G ++ C Sbjct: 70 DTMNFDVIKGKPIRIMWSQ-RDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128 Query: 108 DIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157 +V K YAFVH E E A +AI ++ +++ V SR +G Sbjct: 129 KVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184 >gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo sapiens] Length = 660 Score = 64.7 bits (156), Expect = 1e-10 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 23/163 (14%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHH 57 +FI NL + + + F +G +L C ++ K Y FVH E + AA+ AI ++ Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160 Query: 58 YKLHGVNINVEASKN----------KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIEC 107 L+ + V K+ K+K T +++ N ++ L+ F ++G + Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220 Query: 108 DIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143 +++D + FV E+ EDA +A+ ++ E GK + V Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263 Score = 54.7 bits (130), Expect = 1e-07 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 20/176 (11%) Query: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAI 52 M L++G+L + TE + F G VL + ++ Y +V+ + AE A+ Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69 Query: 53 RNLHHYKLHGVNINVEASKNKSKTSTKLHVGNI-----SPTCTNKELRAKFEEYGPVIEC 107 ++ + G I + S+ + + K VGN+ + NK L F +G ++ C Sbjct: 70 DTMNFDVIKGKPIRIMWSQ-RDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128 Query: 108 DIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157 +V K YAFVH E E A +AI ++ +++ V SR +G Sbjct: 129 KVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184 >gi|224028246 non-POU domain containing, octamer-binding isoform 1 [Homo sapiens] Length = 471 Score = 64.3 bits (155), Expect = 2e-10 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 6/112 (5%) Query: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--YGFVHIEDKTAAEDAIRNLHHYKL 60 +LF+GNLP + TE+E+R LFE+YGK E I K+ +GF+ +E +T AE A L + L Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL 134 Query: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112 G + V + + S L V N+ +N+ L F +G V ++ D Sbjct: 135 RGKQLRVRFACH----SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD 182 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Query: 78 TKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTE 135 ++L VGN+ P T +E+R FE+YG E I KD + F+ +E A A LDN Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 133 Query: 136 FQGKRMHVQLS 146 +GK++ V+ + Sbjct: 134 LRGKQLRVRFA 144 >gi|224028244 non-POU domain containing, octamer-binding isoform 1 [Homo sapiens] Length = 471 Score = 64.3 bits (155), Expect = 2e-10 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 6/112 (5%) Query: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--YGFVHIEDKTAAEDAIRNLHHYKL 60 +LF+GNLP + TE+E+R LFE+YGK E I K+ +GF+ +E +T AE A L + L Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL 134 Query: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112 G + V + + S L V N+ +N+ L F +G V ++ D Sbjct: 135 RGKQLRVRFACH----SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD 182 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Query: 78 TKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTE 135 ++L VGN+ P T +E+R FE+YG E I KD + F+ +E A A LDN Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 133 Query: 136 FQGKRMHVQLS 146 +GK++ V+ + Sbjct: 134 LRGKQLRVRFA 144 >gi|34932414 non-POU domain containing, octamer-binding isoform 1 [Homo sapiens] Length = 471 Score = 64.3 bits (155), Expect = 2e-10 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 6/112 (5%) Query: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--YGFVHIEDKTAAEDAIRNLHHYKL 60 +LF+GNLP + TE+E+R LFE+YGK E I K+ +GF+ +E +T AE A L + L Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL 134 Query: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112 G + V + + S L V N+ +N+ L F +G V ++ D Sbjct: 135 RGKQLRVRFACH----SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD 182 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Query: 78 TKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTE 135 ++L VGN+ P T +E+R FE+YG E I KD + F+ +E A A LDN Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 133 Query: 136 FQGKRMHVQLS 146 +GK++ V+ + Sbjct: 134 LRGKQLRVRFA 144 >gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4 [Homo sapiens] Length = 488 Score = 63.9 bits (154), Expect = 2e-10 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 23/157 (14%) Query: 2 VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG----------FVHIEDKTAAEDA 51 +K+F+G +PR +E+E++ LFE YG V + +++++ FV + AA +A Sbjct: 16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75 Query: 52 IRNLHHYKL-----HGVNIN-VEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVI 105 LH+ K H + + ++ K+ + KL +G +S C ++R F +G + Sbjct: 76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135 Query: 106 ECDIV-------KDYAFVHMERAEDAVEAIRGLDNTE 135 EC I+ + AFV A AI+ + ++ Sbjct: 136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQ 172 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 10/82 (12%) Query: 4 LFIGNLPREATEQEIRSLFEQYGKVL--------ECDIIKNYGFVHIEDKTAAEDAIRNL 55 LFI +LP+E +Q+I +F +G V+ + ++ K +GFV ++ +A+ AI+ + Sbjct: 405 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 464 Query: 56 HHYK--LHGVNINVEASKNKSK 75 + ++ + + + ++ SKN SK Sbjct: 465 NGFQIGMKRLKVQLKRSKNDSK 486 Score = 35.8 bits (81), Expect = 0.062 Identities = 70/327 (21%), Positives = 120/327 (36%), Gaps = 61/327 (18%) Query: 63 VNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA-------- 114 +N ++ S + K+ VG I + + KEL+ FE YG V + ++++D + Sbjct: 1 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60 Query: 115 --FVHMERAEDAVEAIRGLDNTE-FQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHW 171 FV + A+EA L N + G +Q+ + + + D+ G Sbjct: 61 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFI-----GMV 115 Query: 172 SKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSY 231 SK+C + RV E+ +R P +S G + + K +++ Sbjct: 116 SKKCN-ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTM 174 Query: 232 EAVAAAAASVY---------NYAEQTLSQLPQVQNTAMASHLT----------------- 265 E ++ + +Q L+Q Q NTA +LT Sbjct: 175 EGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQAT 234 Query: 266 -STSLDPYD-------RHLLPTSGAAATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAP 317 S++L + + L A AAAAAAA + T+ + + S L T+P Sbjct: 235 SSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSP 294 Query: 318 VPTVGEGYGYGHESELSQASAAARNSL 344 V S + + AA NSL Sbjct: 295 VAA----------STPNSTAGAAMNSL 311 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.315 0.128 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,626,668 Number of Sequences: 37866 Number of extensions: 517560 Number of successful extensions: 5909 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 307 Number of HSP's successfully gapped in prelim test: 124 Number of HSP's that attempted gapping in prelim test: 3582 Number of HSP's gapped (non-prelim): 1341 length of query: 364 length of database: 18,247,518 effective HSP length: 104 effective length of query: 260 effective length of database: 14,309,454 effective search space: 3720458040 effective search space used: 3720458040 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.