Guide to the Human Genome
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Search of human proteins with 93277122

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|93277122 RNA binding motif protein 4 [Homo sapiens]
         (364 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93277122 RNA binding motif protein 4 [Homo sapiens]                734   0.0  
gi|13899354 RNA binding motif protein 4B [Homo sapiens]               650   0.0  
gi|5454064 RNA binding motif protein 14 [Homo sapiens]                140   1e-33
gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens]     83   4e-16
gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 ...    72   1e-12
gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [...    72   1e-12
gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ...    72   1e-12
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]      71   1e-12
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]                      71   2e-12
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]                      71   2e-12
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]                      71   2e-12
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]                      71   2e-12
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]                      71   2e-12
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]      70   2e-12
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila...    70   3e-12
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]           69   9e-12
gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens]     68   1e-11
gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens]      67   3e-11
gi|188219593 TIA1 protein isoform 1 [Homo sapiens]                     67   3e-11
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]               67   3e-11
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]               67   3e-11
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]     66   6e-11
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]     66   6e-11
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho...    65   1e-10
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo...    65   1e-10
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...    65   1e-10
gi|224028246 non-POU domain containing, octamer-binding isoform ...    64   2e-10
gi|224028244 non-POU domain containing, octamer-binding isoform ...    64   2e-10
gi|34932414 non-POU domain containing, octamer-binding isoform 1...    64   2e-10
gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4...    64   2e-10

>gi|93277122 RNA binding motif protein 4 [Homo sapiens]
          Length = 364

 Score =  734 bits (1894), Expect = 0.0
 Identities = 364/364 (100%), Positives = 364/364 (100%)

Query: 1   MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
           MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1   MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60

Query: 61  HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
           HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61  HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120

Query: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS 180
           AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS 180

Query: 181 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS 240
           GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS
Sbjct: 181 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS 240

Query: 241 VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS 300
           VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS
Sbjct: 241 VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS 300

Query: 301 TSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRAR 360
           TSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRAR
Sbjct: 301 TSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRAR 360

Query: 361 YSAF 364
           YSAF
Sbjct: 361 YSAF 364


>gi|13899354 RNA binding motif protein 4B [Homo sapiens]
          Length = 359

 Score =  650 bits (1676), Expect = 0.0
 Identities = 326/365 (89%), Positives = 340/365 (93%), Gaps = 7/365 (1%)

Query: 1   MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
           MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1   MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60

Query: 61  HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
           HGVNINVEASKNKSK STKLHVGNISPTCTN+ELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61  HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 120

Query: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS 180
           AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP+DR+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 180

Query: 181 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAV-AAAAA 239
           GRVAD TEQYNEQYGAVRTPYTM YG+S+YYN+AYGALD YYKR R  RSYEAV AAAAA
Sbjct: 181 GRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDAYGALD-YYKRYR-VRSYEAVAAAAAA 238

Query: 240 SVYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAA 299
           S YNYAEQT+S LPQVQ+T + SHL STS+DPYDRHLLP SGAAAT+AA AAAA    A 
Sbjct: 239 SAYNYAEQTMSHLPQVQSTTVTSHLNSTSVDPYDRHLLPNSGAAATSAAMAAAA----AT 294

Query: 300 STSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRA 359
           ++SYYGRDRSPLRRA A +PTVGEGYGYG ESELSQASAA RNSLYDMARYEREQY DRA
Sbjct: 295 TSSYYGRDRSPLRRAAAMLPTVGEGYGYGPESELSQASAATRNSLYDMARYEREQYVDRA 354

Query: 360 RYSAF 364
           RYSAF
Sbjct: 355 RYSAF 359


>gi|5454064 RNA binding motif protein 14 [Homo sapiens]
          Length = 669

 Score =  140 bits (354), Expect = 1e-33
 Identities = 72/162 (44%), Positives = 106/162 (65%), Gaps = 2/162 (1%)

Query: 2   VKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
           +K+F+GN+   + T +E+ +LF  YG V+ C ++K + FVH+ +   A  AI  LH ++L
Sbjct: 1   MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60

Query: 61  H-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
             G  + VE S+ +   + K+ VGN+S  CT++ELR+ FE  G VIECD+VKDYAFVHME
Sbjct: 61  RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME 120

Query: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 161
           +  DA  AI  L+  E +GKR++V+LST   +  PG+  QSG
Sbjct: 121 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSG 162



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 24/177 (13%)

Query: 204 SYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAASVYNYAEQTLSQLPQVQNTAMASH 263
           SYG+     ++YGA  A     RAA S      AA+S+ +Y  Q  S   Q   +++A  
Sbjct: 340 SYGNQ---PSSYGAQAASSYGVRAAASSYNTQGAASSLGSYGAQAASYGAQSAASSLAYG 396

Query: 264 LTSTSLD-----PYDRHLLP-TSGAAATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAP 317
             + S +      Y+    P  +  AA+ ++  AA  A  A + +Y  +  +   +AT P
Sbjct: 397 AQAASYNAQPSASYNAQSAPYAAQQAASYSSQPAAYVAQPATAAAYASQPAAYAAQATTP 456

Query: 318 ----------VPTVGEGYGYGHESELS-----QASAAARNSLYDMARYEREQYADRA 359
                     V T    YG      LS     Q++AAA  S    A Y  +  A  A
Sbjct: 457 MAGSYGAQPVVQTQLNSYGAQASMGLSGSYGAQSAAAATGSYGAAAAYGAQPSATLA 513


>gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens]
          Length = 524

 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 96/350 (27%), Positives = 141/350 (40%), Gaps = 65/350 (18%)

Query: 3   KLFIGNLPREATEQEIRSLFEQYGKVLE-----------CDIIKNYGFVHIEDKT--AAE 49
           +LFIG +P+    +EI    E+  KV E            D +KN GF  +E ++  AA 
Sbjct: 152 RLFIGGIPKMKKREEI---LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 208

Query: 50  DAIRNL---------HHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEE 100
            A R L         H   +      ++  ++  +T   L+V N+    T   ++  F +
Sbjct: 209 MARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQ 268

Query: 101 YGP--VIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158
           + P  V     ++DYAFVH    EDAV A+  L+ TE +G  + V L+            
Sbjct: 269 FNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP---------- 318

Query: 159 QSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGAL 218
                   KE  +S+     R G  A+  +Q +  Y     PYT++     YY   Y AL
Sbjct: 319 ------VDKE-QYSRYQKAARGGGAAEAAQQPSYVYSC--DPYTLA-----YYGYPYNAL 364

Query: 219 DAYYKRCRAARSYEAVAAAAASVYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLP 278
                     R Y    A  A    Y+    +  P++       H     + P      P
Sbjct: 365 ------IGPNRDYFVKVAIPAIGAQYSMFPAAPAPKMIEDGKI-HTVEHMISPIAVQPDP 417

Query: 279 TSGAAATAAAAAAAAAAVTAAST--SYYGRDRSPLRRATAP----VPTVG 322
            S AAA AAAAAAAAA +   ST   + GR  +P+    AP    +PT G
Sbjct: 418 ASAAAAAAAAAAAAAAVIPTVSTPPPFQGRPITPV-YTVAPNVQRIPTAG 466



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 36/154 (23%)

Query: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNL 55
           ++F+G +PR+  E E+  +FE  G++ E  ++       + Y FV    K  A+ A+R L
Sbjct: 72  EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVREL 131

Query: 56  HHY-----KLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIE--CD 108
           ++Y     +L GV  +V+        + +L +G I      +E+    EE   V E   D
Sbjct: 132 NNYEIRPGRLLGVCCSVD--------NCRLFIGGIPKMKKREEI---LEEIAKVTEGVLD 180

Query: 109 IV-----------KDYAFVHMERAEDAVEAIRGL 131
           ++           + +AFV  E    A  A R L
Sbjct: 181 VIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 214



 Score = 28.5 bits (62), Expect = 9.9
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 79  KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGL 131
           ++ VG I       EL   FE  G + E  ++ D       YAFV      +A  A+R L
Sbjct: 72  EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVREL 131

Query: 132 DNTEFQGKRM 141
           +N E +  R+
Sbjct: 132 NNYEIRPGRL 141


>gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3
           [Homo sapiens]
          Length = 486

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 16/126 (12%)

Query: 2   VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG----------FVHIEDKTAAEDA 51
           +K+F+G +PR  +E+++R LFEQYG V E +++++            FV    + AA +A
Sbjct: 16  IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query: 52  IRNLHHYKL-----HGVNIN-VEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVI 105
              LH+ K+     H + +   ++ KN +    KL +G IS  CT  ++R  F  +G + 
Sbjct: 76  QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135

Query: 106 ECDIVK 111
           EC I++
Sbjct: 136 ECRILR 141



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 22/82 (26%), Positives = 49/82 (59%), Gaps = 10/82 (12%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVL--------ECDIIKNYGFVHIEDKTAAEDAIRNL 55
           LFI +LP+E  +Q++  +F  +G V+        + ++ K +GFV  ++  +A+ AI+++
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462

Query: 56  HHYK--LHGVNINVEASKNKSK 75
           + ++  +  + + ++ SKN SK
Sbjct: 463 NGFQIGMKRLKVQLKRSKNDSK 484



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%)

Query: 79  KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA----------FVHMERAEDAVEAI 128
           K+ VG +  T + K+LR  FE+YG V E ++++D +          FV     + A+EA 
Sbjct: 17  KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query: 129 RGLDN 133
             L N
Sbjct: 77  NALHN 81



 Score = 28.5 bits (62), Expect = 9.9
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 64  NINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAF 115
           +I    S+ +      L + ++     +++L   F  +G V+   +  D        + F
Sbjct: 387 SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF 446

Query: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAP 154
           V  +    A  AI+ ++  +   KR+ VQL  S+  + P
Sbjct: 447 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKP 485


>gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1
           [Homo sapiens]
          Length = 482

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 16/126 (12%)

Query: 2   VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG----------FVHIEDKTAAEDA 51
           +K+F+G +PR  +E+++R LFEQYG V E +++++            FV    + AA +A
Sbjct: 16  IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query: 52  IRNLHHYKL-----HGVNIN-VEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVI 105
              LH+ K+     H + +   ++ KN +    KL +G IS  CT  ++R  F  +G + 
Sbjct: 76  QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135

Query: 106 ECDIVK 111
           EC I++
Sbjct: 136 ECRILR 141



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 22/82 (26%), Positives = 49/82 (59%), Gaps = 10/82 (12%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVL--------ECDIIKNYGFVHIEDKTAAEDAIRNL 55
           LFI +LP+E  +Q++  +F  +G V+        + ++ K +GFV  ++  +A+ AI+++
Sbjct: 399 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 458

Query: 56  HHYK--LHGVNINVEASKNKSK 75
           + ++  +  + + ++ SKN SK
Sbjct: 459 NGFQIGMKRLKVQLKRSKNDSK 480



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%)

Query: 79  KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA----------FVHMERAEDAVEAI 128
           K+ VG +  T + K+LR  FE+YG V E ++++D +          FV     + A+EA 
Sbjct: 17  KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query: 129 RGLDN 133
             L N
Sbjct: 77  NALHN 81



 Score = 28.5 bits (62), Expect = 9.9
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 64  NINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAF 115
           +I    S+ +      L + ++     +++L   F  +G V+   +  D        + F
Sbjct: 383 SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF 442

Query: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAP 154
           V  +    A  AI+ ++  +   KR+ VQL  S+  + P
Sbjct: 443 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKP 481


>gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
           [Homo sapiens]
          Length = 483

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 16/126 (12%)

Query: 2   VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG----------FVHIEDKTAAEDA 51
           +K+F+G +PR  +E+++R LFEQYG V E +++++            FV    + AA +A
Sbjct: 16  IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query: 52  IRNLHHYKL-----HGVNIN-VEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVI 105
              LH+ K+     H + +   ++ KN +    KL +G IS  CT  ++R  F  +G + 
Sbjct: 76  QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135

Query: 106 ECDIVK 111
           EC I++
Sbjct: 136 ECRILR 141



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 22/82 (26%), Positives = 49/82 (59%), Gaps = 10/82 (12%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVL--------ECDIIKNYGFVHIEDKTAAEDAIRNL 55
           LFI +LP+E  +Q++  +F  +G V+        + ++ K +GFV  ++  +A+ AI+++
Sbjct: 400 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 459

Query: 56  HHYK--LHGVNINVEASKNKSK 75
           + ++  +  + + ++ SKN SK
Sbjct: 460 NGFQIGMKRLKVQLKRSKNDSK 481



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%)

Query: 79  KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA----------FVHMERAEDAVEAI 128
           K+ VG +  T + K+LR  FE+YG V E ++++D +          FV     + A+EA 
Sbjct: 17  KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query: 129 RGLDN 133
             L N
Sbjct: 77  NALHN 81



 Score = 28.5 bits (62), Expect = 9.9
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 64  NINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAF 115
           +I    S+ +      L + ++     +++L   F  +G V+   +  D        + F
Sbjct: 384 SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF 443

Query: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAP 154
           V  +    A  AI+ ++  +   KR+ VQL  S+  + P
Sbjct: 444 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKP 482


>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
          Length = 636

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 23/163 (14%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHH 57
           +FI NL +    + +   F  +G +L C ++      K YGFVH E + AAE AI  ++ 
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160

Query: 58  YKLHGVNINVEASKN----------KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIEC 107
             L+   + V   K+          ++K  T +++ N      ++ L+  F ++GP +  
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220

Query: 108 DIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
            ++ D       + FV  ER EDA +A+  ++  E  GK+++V
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263



 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 20/176 (11%)

Query: 1   MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAI 52
           M  L++G+L  + TE  +   F   G +L   + ++        Y +V+ +    AE A+
Sbjct: 10  MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69

Query: 53  RNLHHYKLHGVNINVEASKNKSKTSTKLHVGNI-----SPTCTNKELRAKFEEYGPVIEC 107
             ++   + G  + +  S+ +  +  K  VGNI       +  NK L   F  +G ++ C
Sbjct: 70  DTMNFDVIKGKPVRIMWSQ-RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128

Query: 108 DIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
            +V      K Y FVH E  E A  AI  ++      +++ V    SR      +G
Sbjct: 129 KVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 76/376 (20%), Positives = 134/376 (35%), Gaps = 105/376 (27%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLH 56
           ++I N   +  ++ ++ LF ++G  L   ++       K +GFV  E    A+ A+  ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 57  HYKLHGVNINVEASKNKSKTSTK--------------------LHVGNISPTCTNKELRA 96
             +L+G  I V  ++ K +  T+                    L+V N+     ++ LR 
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312

Query: 97  KFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 150
           +F  +G +    ++      K + FV     E+A +A+  ++      K ++V L+    
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR-- 370

Query: 151 RTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVR-------TPYTM 203
                                       +  R A LT QY ++  +VR        PY  
Sbjct: 371 ----------------------------KEERQAHLTNQYMQRMASVRAVPNPVINPYQP 402

Query: 204 SYGDSLYYNNAYGALD---AYYKRCRAARSYEAV--------------------AAAAAS 240
           +   S Y+  A        AYY   + A+   +                      AA   
Sbjct: 403 A-PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRP 461

Query: 241 VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS 300
            ++      SQ+P+V +T   ++ TST           T G    AAAAAA  A  T   
Sbjct: 462 PFSTMRPASSQVPRVMSTQRVAN-TSTQ----------TMGPRPAAAAAAATPAVRTVPQ 510

Query: 301 TSYYGRDRSPLRRATA 316
             Y    R+P +   A
Sbjct: 511 YKYAAGVRNPQQHLNA 526


>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
          Length = 380

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 18/153 (11%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55
           L +  LP+  T++E RSLF   G++  C ++++        YGFV+  D   AE AI  L
Sbjct: 48  LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107

Query: 56  HHYKLHGVNINVEASKNKSKT--STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD- 112
           +  +L    I V  ++  S +     L+V  +  T T KEL   F +YG +I   I+ D 
Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 167

Query: 113 -------YAFVHMERAEDAVEAIRGLDNTEFQG 138
                    F+  ++  +A EAI+GL+  +  G
Sbjct: 168 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           L++  LP+  T++E+  LF QYG+++   I+        +  GF+  + +  AE+AI+ L
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193

Query: 56  HHYKLHGVN--INVEASKNKSKTSTK 79
           +  K  G    I V+ + N S+ S++
Sbjct: 194 NGQKPSGATEPITVKFANNPSQKSSQ 219



 Score = 33.9 bits (76), Expect = 0.23
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 76  TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
           + T L V  +    T +E R+ F   G +  C +V+D        Y FV+    +DA +A
Sbjct: 44  SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103

Query: 128 IRGLDNTEFQGKRMHV 143
           I  L+    Q K + V
Sbjct: 104 INTLNGLRLQTKTIKV 119



 Score = 32.3 bits (72), Expect = 0.68
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           +F+ NL  ++ E  +  LF  +G V    +I        K +GFV + +   A  AI +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358

Query: 56  HHYKLHGVNINVEASKNKSKTS 77
           + Y+L    + V    NK+  S
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHKS 380


>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
          Length = 369

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 18/153 (11%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55
           L +  LP+  T++E RSLF   G++  C ++++        YGFV+  D   AE AI  L
Sbjct: 51  LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 110

Query: 56  HHYKLHGVNINVEASKNKSKT--STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD- 112
           +  +L    I V  ++  S +     L+V  +  T T KEL   F +YG +I   I+ D 
Sbjct: 111 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 170

Query: 113 -------YAFVHMERAEDAVEAIRGLDNTEFQG 138
                    F+  ++  +A EAI+GL+  +  G
Sbjct: 171 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 203



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           L++  LP+  T++E+  LF QYG+++   I+        +  GF+  + +  AE+AI+ L
Sbjct: 137 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 196

Query: 56  HHYKLHGVN--INVEASKNKSKTSTK 79
           +  K  G    I V+ + N S+ S++
Sbjct: 197 NGQKPSGATEPITVKFANNPSQKSSQ 222



 Score = 33.9 bits (76), Expect = 0.23
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 76  TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
           + T L V  +    T +E R+ F   G +  C +V+D        Y FV+    +DA +A
Sbjct: 47  SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 106

Query: 128 IRGLDNTEFQGKRMHV 143
           I  L+    Q K + V
Sbjct: 107 INTLNGLRLQTKTIKV 122



 Score = 32.3 bits (72), Expect = 0.68
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           +F+ NL  ++ E  +  LF  +G V    +I        K +GFV + +   A  AI +L
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347

Query: 56  HHYKLHGVNINVEASKNKSKTS 77
           + Y+L    + V    NK+  S
Sbjct: 348 NGYRLGDRVLQVSFKTNKAHKS 369


>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
          Length = 366

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 18/153 (11%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55
           L +  LP+  T++E RSLF   G++  C ++++        YGFV+  D   AE AI  L
Sbjct: 48  LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107

Query: 56  HHYKLHGVNINVEASKNKSKT--STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD- 112
           +  +L    I V  ++  S +     L+V  +  T T KEL   F +YG +I   I+ D 
Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 167

Query: 113 -------YAFVHMERAEDAVEAIRGLDNTEFQG 138
                    F+  ++  +A EAI+GL+  +  G
Sbjct: 168 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           L++  LP+  T++E+  LF QYG+++   I+        +  GF+  + +  AE+AI+ L
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193

Query: 56  HHYKLHGVN--INVEASKNKSKTSTK 79
           +  K  G    I V+ + N S+ S++
Sbjct: 194 NGQKPSGATEPITVKFANNPSQKSSQ 219



 Score = 33.9 bits (76), Expect = 0.23
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 76  TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
           + T L V  +    T +E R+ F   G +  C +V+D        Y FV+    +DA +A
Sbjct: 44  SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103

Query: 128 IRGLDNTEFQGKRMHV 143
           I  L+    Q K + V
Sbjct: 104 INTLNGLRLQTKTIKV 119



 Score = 32.3 bits (72), Expect = 0.68
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           +F+ NL  ++ E  +  LF  +G V    +I        K +GFV + +   A  AI +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344

Query: 56  HHYKLHGVNINVEASKNKSKTS 77
           + Y+L    + V    NK+  S
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHKS 366


>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
          Length = 383

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 18/153 (11%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55
           L +  LP+  T++E RSLF   G++  C ++++        YGFV+  D   AE AI  L
Sbjct: 65  LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 124

Query: 56  HHYKLHGVNINVEASKNKSKT--STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD- 112
           +  +L    I V  ++  S +     L+V  +  T T KEL   F +YG +I   I+ D 
Sbjct: 125 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 184

Query: 113 -------YAFVHMERAEDAVEAIRGLDNTEFQG 138
                    F+  ++  +A EAI+GL+  +  G
Sbjct: 185 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 217



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           L++  LP+  T++E+  LF QYG+++   I+        +  GF+  + +  AE+AI+ L
Sbjct: 151 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 210

Query: 56  HHYKLHGVN--INVEASKNKSKTSTK 79
           +  K  G    I V+ + N S+ S++
Sbjct: 211 NGQKPSGATEPITVKFANNPSQKSSQ 236



 Score = 33.9 bits (76), Expect = 0.23
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 76  TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
           + T L V  +    T +E R+ F   G +  C +V+D        Y FV+    +DA +A
Sbjct: 61  SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 120

Query: 128 IRGLDNTEFQGKRMHV 143
           I  L+    Q K + V
Sbjct: 121 INTLNGLRLQTKTIKV 136



 Score = 32.3 bits (72), Expect = 0.68
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           +F+ NL  ++ E  +  LF  +G V    +I        K +GFV + +   A  AI +L
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361

Query: 56  HHYKLHGVNINVEASKNKSKTS 77
           + Y+L    + V    NK+  S
Sbjct: 362 NGYRLGDRVLQVSFKTNKAHKS 383


>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
          Length = 366

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 18/153 (11%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55
           L +  LP+  T++E RSLF   G++  C ++++        YGFV+  D   AE AI  L
Sbjct: 48  LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107

Query: 56  HHYKLHGVNINVEASKNKSKT--STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD- 112
           +  +L    I V  ++  S +     L+V  +  T T KEL   F +YG +I   I+ D 
Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 167

Query: 113 -------YAFVHMERAEDAVEAIRGLDNTEFQG 138
                    F+  ++  +A EAI+GL+  +  G
Sbjct: 168 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           L++  LP+  T++E+  LF QYG+++   I+        +  GF+  + +  AE+AI+ L
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193

Query: 56  HHYKLHGVN--INVEASKNKSKTSTK 79
           +  K  G    I V+ + N S+ S++
Sbjct: 194 NGQKPSGATEPITVKFANNPSQKSSQ 219



 Score = 33.9 bits (76), Expect = 0.23
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 76  TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
           + T L V  +    T +E R+ F   G +  C +V+D        Y FV+    +DA +A
Sbjct: 44  SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103

Query: 128 IRGLDNTEFQGKRMHV 143
           I  L+    Q K + V
Sbjct: 104 INTLNGLRLQTKTIKV 119



 Score = 32.3 bits (72), Expect = 0.68
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           +F+ NL  ++ E  +  LF  +G V    +I        K +GFV + +   A  AI +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344

Query: 56  HHYKLHGVNINVEASKNKSKTS 77
           + Y+L    + V    NK+  S
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHKS 366


>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
          Length = 631

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 23/163 (14%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHH 57
           +F+ NL +    + +      +G +L C+++      K YGFVH E   AAE AI+ ++ 
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160

Query: 58  YKLHGVNINVEASKNKSKTSTKL----------HVGNISPTCTNKELRAKFEEYGPVIEC 107
             L+G  + V   K++ +   +L          ++ N      ++ L+  F ++GP +  
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220

Query: 108 DIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
            ++ D       + FV  ER EDA +A+  ++  E  GK+++V
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 20/173 (11%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDIIK--------NYGFVHIEDKTAAEDAIRNL 55
           L++G+L  + TE  +   F   G +L   I +        NY +V+ +    AE A+  +
Sbjct: 13  LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72

Query: 56  HHYKLHGVNINV-----EASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV 110
           +   + G  + +     + S  KS     + V N+  +  NK L      +G ++ C++V
Sbjct: 73  NFDVIKGKPVRIMWSQRDPSLRKSGVGN-IFVKNLDKSINNKALYDTVSAFGNILSCNVV 131

Query: 111 ------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
                 K Y FVH E  E A  AI+ ++     G+++ V    SR      +G
Sbjct: 132 CDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELG 184



 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 72/369 (19%), Positives = 132/369 (35%), Gaps = 96/369 (26%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLH 56
           ++I N   +  ++ ++ LF ++G  L   ++       K +GFV  E    A+ A+  ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 57  HYKLHGVNINVEASKNKSKTSTK--------------------LHVGNISPTCTNKELRA 96
             +L+G  I V  ++ K +  T+                    L+V N+     ++ LR 
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312

Query: 97  KFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 150
            F  +G +    ++      K + FV     E+A +A+  ++      K ++V L+    
Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR-- 370

Query: 151 RTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210
                                       +  R A LT +Y ++  +VR         S Y
Sbjct: 371 ----------------------------KEERQAYLTNEYMQRMASVRAVPNQRAPPSGY 402

Query: 211 YNNAYGALD---AYYKRCRAAR-------------------SYEAVAAAAASV-YNYAEQ 247
           +  A        AYY   + AR                      A+   A  V ++    
Sbjct: 403 FMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFSTMRP 462

Query: 248 TLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAASTSYYGRD 307
             SQ+P+V +T   ++ ++ ++ P            A AAAAAA  A  T     Y    
Sbjct: 463 ASSQVPRVMSTQRVANTSTQTVGP----------RPAAAAAAAATPAVRTVPRYKYAAGV 512

Query: 308 RSPLRRATA 316
           R+P +   A
Sbjct: 513 RNPQQHRNA 521



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 74  SKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAV 125
           S  +  L+VG++ P  T   L  KF   GP++   I +D        YA+V+ +  +DA 
Sbjct: 7   SYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAE 66

Query: 126 EAIRGLDNTEFQGKRMHVQLS 146
            A+  ++    +GK + +  S
Sbjct: 67  HALDTMNFDVIKGKPVRIMWS 87


>gi|115511032 ELAV (embryonic lethal, abnormal vision,
           Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
          Length = 359

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 18/153 (11%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55
           L +  LP+  T++E++SLF   G++  C ++++        YGFV+  D   AE AI  L
Sbjct: 41  LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100

Query: 56  HHYKLHGVNINVEASKNKSKT--STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD- 112
           +  +L    I V  ++  S +     L+V  +  T T KEL   F +YG +I   I+ D 
Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 160

Query: 113 -------YAFVHMERAEDAVEAIRGLDNTEFQG 138
                    F+  ++  +A EAI+GL+  +  G
Sbjct: 161 VTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 193



 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           L++  LP+  T++E+  LF QYG+++   I+        +  GF+  + +  AE+AI+ L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186

Query: 56  HHYKLHGVN--INVEASKNKSKTSTK 79
           +  K  G    I V+ + N S+ + +
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQ 212



 Score = 36.6 bits (83), Expect = 0.036
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 8/82 (9%)

Query: 70  SKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERA 121
           S N   + T L V  +    T +EL++ F   G +  C +V+D        Y FV+    
Sbjct: 31  SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90

Query: 122 EDAVEAIRGLDNTEFQGKRMHV 143
           +DA +AI  L+    Q K + V
Sbjct: 91  KDAEKAINTLNGLRLQTKTIKV 112



 Score = 32.3 bits (72), Expect = 0.68
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 8/79 (10%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           +F+ NL  +A E  +  +F  +G V    +I        K +GFV + +   A  AI +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 56  HHYKLHGVNINVEASKNKS 74
           + Y+L    + V    NK+
Sbjct: 338 NGYRLGDRVLQVSFKTNKT 356


>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
          Length = 465

 Score = 68.6 bits (166), Expect = 9e-12
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 70/319 (21%)

Query: 2   VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIR 53
           +KLF+G +PR   E++++ +FEQ+G++ E  +IK+          F+    + +A  A  
Sbjct: 7   IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66

Query: 54  NLHHYK-LHGVN--INVEASKNKSK-TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDI 109
            LH  K L G+N  I V+ + ++S+    KL VG +    T++++R  FE +G + EC +
Sbjct: 67  ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126

Query: 110 V-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGC 162
           +       K  AFV  +   +A  AI  L ++                RT PG       
Sbjct: 127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSS----------------RTLPGASSS--- 167

Query: 163 YRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYY 222
               K     KE  + R  +VA     +        +P  + +G             AY 
Sbjct: 168 -LVVKFADTEKERGLRRMQQVATQLGMF--------SPIALQFG-------------AYS 205

Query: 223 KRCRAARSYEAVAAAAASVYNYAEQTLSQLPQVQNTAM--ASHLTSTSLDPYDRHLLPTS 280
              +A    +A   AA S Y     T++ + Q+Q+ A   A+ L +T        + P+S
Sbjct: 206 AYTQALMQQQAALVAAHSAYLSPMATMAAV-QMQHMAAINANGLIATP-------ITPSS 257

Query: 281 GAAATAAAAAAAAAAVTAA 299
           G +   A AA   +A+ AA
Sbjct: 258 GTSTPPAIAATPVSAIPAA 276



 Score = 38.1 bits (87), Expect = 0.012
 Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           +FI +LP+E T+ EI  +F  +G V+   +         K +GFV  ++  +A+ AI+ +
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441

Query: 56  HHYKLHGVNINVEASKNK 73
           + +++    + V+  + K
Sbjct: 442 NGFQIGMKRLKVQLKRPK 459



 Score = 32.0 bits (71), Expect = 0.89
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 73  KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD-YAFVH 117
           K   + KL VG I      K+L+  FE++G + E  ++KD Y  +H
Sbjct: 2   KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLH 47


>gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens]
          Length = 593

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 99/408 (24%), Positives = 149/408 (36%), Gaps = 112/408 (27%)

Query: 3   KLFIGNLPREATEQEIRSLFEQYGKVLE-----------CDIIKNYGFVHIEDKT--AAE 49
           +LFIG +P+    +EI    E+  KV E            D +KN GF  +E ++  AA 
Sbjct: 152 RLFIGGIPKMKKREEI---LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 208

Query: 50  DAIRNL---------HHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEE 100
            A R L         H   +      ++  ++  +T   L+V N+    T   ++  F +
Sbjct: 209 MARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQ 268

Query: 101 YGP--VIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158
           + P  V     ++DYAFVH    EDAV A+  L+ TE +G  + V L+            
Sbjct: 269 FNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP---------- 318

Query: 159 QSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGAL 218
                   KE  +S+     R G  A+  +Q +  Y     PYT++Y     YN   G  
Sbjct: 319 ------VDKE-QYSRYQKAARGGGAAEAAQQPSYVYSC--DPYTLAYY-GYPYNALIGPN 368

Query: 219 DAYYKRCRAAR----------------SYEAVAAAAASVYN-------------YAEQTL 249
             Y+ +  + R                SY    +A   +Y+             Y     
Sbjct: 369 RDYFVKAGSIRGRGRGAAGNRAPGPRGSYLGGYSAGRGIYSRYHEGKGKQQEKGYELVPN 428

Query: 250 SQLPQVQNTAMAS-----------------------------HLTSTSLDPYDRHLLPTS 280
            ++P V   A+                               H     + P      P S
Sbjct: 429 LEIPTVNPVAIKPGTVAIPAIGAQYSMFPAAPAPKMIEDGKIHTVEHMISPIAVQPDPAS 488

Query: 281 GAAATAAAAAAAAAAVTAAST--SYYGRDRSPLRRATAP----VPTVG 322
            AAA AAAAAAAAA +   ST   + GR  +P+    AP    +PT G
Sbjct: 489 AAAAAAAAAAAAAAVIPTVSTPPPFQGRPITPV-YTVAPNVQRIPTAG 535



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 36/154 (23%)

Query: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNL 55
           ++F+G +PR+  E E+  +FE  G++ E  ++       + Y FV    K  A+ A+R L
Sbjct: 72  EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVREL 131

Query: 56  HHY-----KLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIE--CD 108
           ++Y     +L GV  +V+        + +L +G I      +E+    EE   V E   D
Sbjct: 132 NNYEIRPGRLLGVCCSVD--------NCRLFIGGIPKMKKREEI---LEEIAKVTEGVLD 180

Query: 109 IV-----------KDYAFVHMERAEDAVEAIRGL 131
           ++           + +AFV  E    A  A R L
Sbjct: 181 VIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 214



 Score = 28.5 bits (62), Expect = 9.9
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 79  KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGL 131
           ++ VG I       EL   FE  G + E  ++ D       YAFV      +A  A+R L
Sbjct: 72  EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVREL 131

Query: 132 DNTEFQGKRM 141
           +N E +  R+
Sbjct: 132 NNYEIRPGRL 141


>gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens]
          Length = 221

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 27/201 (13%)

Query: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG-----FVHIEDKTAAEDAIRNLHH 57
           ++++GNLP +  E+++  LF +YG++ E ++   +G     FV  ED   AEDAI   + 
Sbjct: 15  RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74

Query: 58  YKLHGVNINVEASKN----------------KSKTSTKLHVGNISPTCTNKELRAKFEEY 101
           Y      + VE  +                   ++  ++ V  + P+ + ++L+    E 
Sbjct: 75  YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREA 134

Query: 102 GPVIECDIVKD-YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQS 160
           G V   D+ KD    V   R ED   A+R LD+T+F   R H +  TS +R  P      
Sbjct: 135 GDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF---RSH-EGETSYIRVYPERSTSY 190

Query: 161 GCYRCGKEGHWSKECPIDRSG 181
           G Y   + G   ++ P    G
Sbjct: 191 G-YSRSRSGSRGRDSPYQSRG 210


>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
          Length = 375

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 25/214 (11%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN------YGFVHIEDKTAAEDAIRNLHH 57
           L++GNL R+ TE  I  LF Q G    C +I +      Y FV   +   A  A+  ++ 
Sbjct: 9   LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68

Query: 58  YKLHGVNINVE----ASKNKSKTSTKLHV--GNISPTCTNKELRAKFEEYGPVIECDIVK 111
            K+ G  + V      S  K  TS   HV  G++SP  T ++++A F  +G + +  +VK
Sbjct: 69  RKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK 128

Query: 112 D--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCY 163
           D        Y FV      DA  AI+ +      G+++    +T R   AP    +S   
Sbjct: 129 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYESNTK 187

Query: 164 RCGKEGHWSK----ECPIDRSGRVADLTEQYNEQ 193
           +   +   ++     C +   G  + LTEQ   Q
Sbjct: 188 QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQ 221



 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 34/169 (20%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55
           +F+G+L  E T ++I++ F  +G++ +  ++K+        YGFV   +K  AE+AI+ +
Sbjct: 97  VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156

Query: 56  HHYKLHGVNINVE-------ASKNKSKTSTK-----------------LHVGNISPTCTN 91
               L G  I          A K+  +++TK                 ++ G ++   T 
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 216

Query: 92  KELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTEFQG 138
           + +R  F  +G ++E  +  D  Y+FV     E A  AI  ++ T  +G
Sbjct: 217 QLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEG 265


>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
          Length = 367

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 18/147 (12%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55
           L +  LP+  T+ E +SLF   G +  C ++++        YGFV+  D   A+ AI  L
Sbjct: 41  LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100

Query: 56  HHYKLHGVNINVEASKNKSKT--STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD- 112
           +  KL    I V  ++  S +     L+V  +  T + KE+   F +YG +I   I+ D 
Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQ 160

Query: 113 -------YAFVHMERAEDAVEAIRGLD 132
                    F+  ++  +A EAI+GL+
Sbjct: 161 VTGVSRGVGFIRFDKRIEAEEAIKGLN 187



 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 10/82 (12%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           L++  LP+  +++E+  LF QYG+++   I+        +  GF+  + +  AE+AI+ L
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186

Query: 56  HHYKLHGV--NINVEASKNKSK 75
           +  K  G    I V+ + N S+
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQ 208



 Score = 32.3 bits (72), Expect = 0.68
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           +F+ NL  EA E  +  LF  +G V    +I        K +GFV + +   A  AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query: 56  HHYKL 60
           + Y+L
Sbjct: 346 NGYRL 350



 Score = 29.3 bits (64), Expect = 5.8
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 80  LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGL 131
           + V N+SP      L   F  +G V    +++D        + FV M   ++A  AI  L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query: 132 DNTEFQGKRMHVQLSTSRLRTA 153
           +      + + V   TS+   A
Sbjct: 346 NGYRLGERVLQVSFKTSKQHKA 367


>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
          Length = 360

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 18/147 (12%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55
           L +  LP+  T+ E +SLF   G +  C ++++        YGFV+  D   A+ AI  L
Sbjct: 41  LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100

Query: 56  HHYKLHGVNINVEASKNKSKT--STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD- 112
           +  KL    I V  ++  S +     L+V  +  T + KE+   F +YG +I   I+ D 
Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQ 160

Query: 113 -------YAFVHMERAEDAVEAIRGLD 132
                    F+  ++  +A EAI+GL+
Sbjct: 161 VTGVSRGVGFIRFDKRIEAEEAIKGLN 187



 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 10/82 (12%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           L++  LP+  +++E+  LF QYG+++   I+        +  GF+  + +  AE+AI+ L
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186

Query: 56  HHYKLHGV--NINVEASKNKSK 75
           +  K  G    I V+ + N S+
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQ 208



 Score = 32.3 bits (72), Expect = 0.68
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
           +F+ NL  EA E  +  LF  +G V    +I        K +GFV + +   A  AI +L
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338

Query: 56  HHYKL 60
           + Y+L
Sbjct: 339 NGYRL 343



 Score = 29.3 bits (64), Expect = 5.8
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 80  LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGL 131
           + V N+SP      L   F  +G V    +++D        + FV M   ++A  AI  L
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338

Query: 132 DNTEFQGKRMHVQLSTSRLRTA 153
           +      + + V   TS+   A
Sbjct: 339 NGYRLGERVLQVSFKTSKQHKA 360


>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
          Length = 494

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 29/172 (16%)

Query: 1   MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
           M +++IG L  +A E+++   F+ YGK+LE D+   YGFV  +D   A+DA+  L+   L
Sbjct: 1   MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL 60

Query: 61  HGVNINVEASKN--------------------------KSKTSTKLHVGNISPTCTNKEL 94
            G  + VE ++                            ++T  +L V N+S  C+ ++L
Sbjct: 61  CGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDL 120

Query: 95  RAKFEEYGPVIECDI---VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
           +    + G V   D     K+   +      D   A+  LD TE  G+++ +
Sbjct: 121 KDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 79  KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 138
           ++++G +S     +++   F+ YG ++E D+   Y FV  +   DA +A+  L+  +  G
Sbjct: 3   RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62

Query: 139 KRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSG 181
           +R+ V+ +    R         G Y  G+ G+  +    D+ G
Sbjct: 63  ERVIVEHARGPRR--------DGSYGSGRSGYGYRRSGRDKYG 97


>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
          Length = 238

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 78  TKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNT 134
           TK++VGN+       EL   F  YGP+    I ++   +AFV  E   DA +A+RGLD  
Sbjct: 11  TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70

Query: 135 EFQGKRMHVQLST-----SRLRTAPG---MGDQSGCYRCGKEGHWSKEC 175
              G R+ V+LST     SR    P          CY CG++GH++ +C
Sbjct: 71  VICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119



 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 3  KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN---YGFVHIEDKTAAEDAIRNLHHYK 59
          K+++GNL   A + E+   F  YG +    I +N   + FV  ED   AEDA+R L    
Sbjct: 12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 71

Query: 60 LHGVNINVEASKNKSKTS 77
          + G  + VE S    + S
Sbjct: 72 ICGSRVRVELSTGMPRRS 89


>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
           sapiens]
          Length = 631

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 23/163 (14%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHH 57
           +FI NL +    + +   F  +G +L C ++      K Y FVH E + AA+ AI  ++ 
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160

Query: 58  YKLHGVNINVEASKN----------KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIEC 107
             L+   + V   K+          K+K  T +++ N      ++ L+  F ++G  +  
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220

Query: 108 DIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
            +++D       + FV  E+ EDA +A+  ++  E  GK + V
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 20/176 (11%)

Query: 1   MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAI 52
           M  L++G+L  + TE  +   F   G VL   + ++        Y +V+ +    AE A+
Sbjct: 10  MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69

Query: 53  RNLHHYKLHGVNINVEASKNKSKTSTKLHVGNI-----SPTCTNKELRAKFEEYGPVIEC 107
             ++   + G  I +  S+ +  +  K  VGN+       +  NK L   F  +G ++ C
Sbjct: 70  DTMNFDVIKGKPIRIMWSQ-RDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128

Query: 108 DIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
            +V      K YAFVH E  E A +AI  ++      +++ V    SR      +G
Sbjct: 129 KVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184


>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
           sapiens]
          Length = 644

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 23/163 (14%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHH 57
           +FI NL +    + +   F  +G +L C ++      K Y FVH E + AA+ AI  ++ 
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160

Query: 58  YKLHGVNINVEASKN----------KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIEC 107
             L+   + V   K+          K+K  T +++ N      ++ L+  F ++G  +  
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220

Query: 108 DIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
            +++D       + FV  E+ EDA +A+  ++  E  GK + V
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 20/176 (11%)

Query: 1   MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAI 52
           M  L++G+L  + TE  +   F   G VL   + ++        Y +V+ +    AE A+
Sbjct: 10  MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69

Query: 53  RNLHHYKLHGVNINVEASKNKSKTSTKLHVGNI-----SPTCTNKELRAKFEEYGPVIEC 107
             ++   + G  I +  S+ +  +  K  VGN+       +  NK L   F  +G ++ C
Sbjct: 70  DTMNFDVIKGKPIRIMWSQ-RDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128

Query: 108 DIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
            +V      K YAFVH E  E A +AI  ++      +++ V    SR      +G
Sbjct: 129 KVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 23/163 (14%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHH 57
           +FI NL +    + +   F  +G +L C ++      K Y FVH E + AA+ AI  ++ 
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160

Query: 58  YKLHGVNINVEASKN----------KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIEC 107
             L+   + V   K+          K+K  T +++ N      ++ L+  F ++G  +  
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220

Query: 108 DIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
            +++D       + FV  E+ EDA +A+  ++  E  GK + V
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 20/176 (11%)

Query: 1   MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAI 52
           M  L++G+L  + TE  +   F   G VL   + ++        Y +V+ +    AE A+
Sbjct: 10  MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69

Query: 53  RNLHHYKLHGVNINVEASKNKSKTSTKLHVGNI-----SPTCTNKELRAKFEEYGPVIEC 107
             ++   + G  I +  S+ +  +  K  VGN+       +  NK L   F  +G ++ C
Sbjct: 70  DTMNFDVIKGKPIRIMWSQ-RDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128

Query: 108 DIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
            +V      K YAFVH E  E A +AI  ++      +++ V    SR      +G
Sbjct: 129 KVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184


>gi|224028246 non-POU domain containing, octamer-binding isoform 1
           [Homo sapiens]
          Length = 471

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 6/112 (5%)

Query: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--YGFVHIEDKTAAEDAIRNLHHYKL 60
           +LF+GNLP + TE+E+R LFE+YGK  E  I K+  +GF+ +E +T AE A   L +  L
Sbjct: 75  RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL 134

Query: 61  HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112
            G  + V  + +    S  L V N+    +N+ L   F  +G V    ++ D
Sbjct: 135 RGKQLRVRFACH----SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD 182



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 78  TKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTE 135
           ++L VGN+ P  T +E+R  FE+YG   E  I KD  + F+ +E    A  A   LDN  
Sbjct: 74  SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 133

Query: 136 FQGKRMHVQLS 146
            +GK++ V+ +
Sbjct: 134 LRGKQLRVRFA 144


>gi|224028244 non-POU domain containing, octamer-binding isoform 1
           [Homo sapiens]
          Length = 471

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 6/112 (5%)

Query: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--YGFVHIEDKTAAEDAIRNLHHYKL 60
           +LF+GNLP + TE+E+R LFE+YGK  E  I K+  +GF+ +E +T AE A   L +  L
Sbjct: 75  RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL 134

Query: 61  HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112
            G  + V  + +    S  L V N+    +N+ L   F  +G V    ++ D
Sbjct: 135 RGKQLRVRFACH----SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD 182



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 78  TKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTE 135
           ++L VGN+ P  T +E+R  FE+YG   E  I KD  + F+ +E    A  A   LDN  
Sbjct: 74  SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 133

Query: 136 FQGKRMHVQLS 146
            +GK++ V+ +
Sbjct: 134 LRGKQLRVRFA 144


>gi|34932414 non-POU domain containing, octamer-binding isoform 1
           [Homo sapiens]
          Length = 471

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 6/112 (5%)

Query: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--YGFVHIEDKTAAEDAIRNLHHYKL 60
           +LF+GNLP + TE+E+R LFE+YGK  E  I K+  +GF+ +E +T AE A   L +  L
Sbjct: 75  RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL 134

Query: 61  HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112
            G  + V  + +    S  L V N+    +N+ L   F  +G V    ++ D
Sbjct: 135 RGKQLRVRFACH----SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD 182



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 78  TKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTE 135
           ++L VGN+ P  T +E+R  FE+YG   E  I KD  + F+ +E    A  A   LDN  
Sbjct: 74  SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 133

Query: 136 FQGKRMHVQLS 146
            +GK++ V+ +
Sbjct: 134 LRGKQLRVRFA 144


>gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4
           [Homo sapiens]
          Length = 488

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 23/157 (14%)

Query: 2   VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG----------FVHIEDKTAAEDA 51
           +K+F+G +PR  +E+E++ LFE YG V + +++++            FV    + AA +A
Sbjct: 16  IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query: 52  IRNLHHYKL-----HGVNIN-VEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVI 105
              LH+ K      H + +   ++ K+ +    KL +G +S  C   ++R  F  +G + 
Sbjct: 76  QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135

Query: 106 ECDIV-------KDYAFVHMERAEDAVEAIRGLDNTE 135
           EC I+       +  AFV       A  AI+ +  ++
Sbjct: 136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQ 172



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 10/82 (12%)

Query: 4   LFIGNLPREATEQEIRSLFEQYGKVL--------ECDIIKNYGFVHIEDKTAAEDAIRNL 55
           LFI +LP+E  +Q+I  +F  +G V+        + ++ K +GFV  ++  +A+ AI+ +
Sbjct: 405 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 464

Query: 56  HHYK--LHGVNINVEASKNKSK 75
           + ++  +  + + ++ SKN SK
Sbjct: 465 NGFQIGMKRLKVQLKRSKNDSK 486



 Score = 35.8 bits (81), Expect = 0.062
 Identities = 70/327 (21%), Positives = 120/327 (36%), Gaps = 61/327 (18%)

Query: 63  VNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA-------- 114
           +N  ++ S      + K+ VG I  + + KEL+  FE YG V + ++++D +        
Sbjct: 1   MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60

Query: 115 --FVHMERAEDAVEAIRGLDNTE-FQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHW 171
             FV     + A+EA   L N +   G    +Q+  +    +  + D+         G  
Sbjct: 61  CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFI-----GMV 115

Query: 172 SKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSY 231
           SK+C  +   RV        E+   +R P  +S G +    +         K    +++ 
Sbjct: 116 SKKCN-ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTM 174

Query: 232 EAVAAAAASVY---------NYAEQTLSQLPQVQNTAMASHLT----------------- 265
           E  ++     +            +Q L+Q  Q  NTA   +LT                 
Sbjct: 175 EGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQAT 234

Query: 266 -STSLDPYD-------RHLLPTSGAAATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAP 317
            S++L  +         + L     A  AAAAAAA  + T+ + +      S L   T+P
Sbjct: 235 SSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSP 294

Query: 318 VPTVGEGYGYGHESELSQASAAARNSL 344
           V            S  +  + AA NSL
Sbjct: 295 VAA----------STPNSTAGAAMNSL 311


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.128    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,626,668
Number of Sequences: 37866
Number of extensions: 517560
Number of successful extensions: 5909
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 3582
Number of HSP's gapped (non-prelim): 1341
length of query: 364
length of database: 18,247,518
effective HSP length: 104
effective length of query: 260
effective length of database: 14,309,454
effective search space: 3720458040
effective search space used: 3720458040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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