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Search of human proteins with 93277074
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|93277074 ribonuclease P 25kDa subunit [Homo sapiens]
(199 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|93277074 ribonuclease P 25kDa subunit [Homo sapiens] 404 e-113
gi|22325372 hypothetical protein LOC138716 [Homo sapiens] 132 3e-31
gi|22325370 hypothetical protein LOC138716 [Homo sapiens] 132 3e-31
gi|7706501 WW domain binding protein 11 [Homo sapiens] 43 2e-04
gi|21071077 dishevelled-associated activator of morphogenesis 1 ... 42 3e-04
gi|119943102 CREB binding protein isoform b [Homo sapiens] 42 4e-04
gi|119943104 CREB binding protein isoform a [Homo sapiens] 42 4e-04
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 40 0.001
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 40 0.001
gi|148727370 immediate early response 5-like [Homo sapiens] 39 0.002
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 39 0.004
gi|48717426 hypothetical protein LOC401565 [Homo sapiens] 39 0.004
gi|148276998 zinc finger protein 628 [Homo sapiens] 39 0.004
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 38 0.005
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 38 0.005
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 38 0.005
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 38 0.005
gi|150170670 piccolo isoform 2 [Homo sapiens] 38 0.005
gi|150378539 piccolo isoform 1 [Homo sapiens] 38 0.005
gi|166706868 synaptopodin 2-like isoform a [Homo sapiens] 38 0.005
gi|50301232 synaptopodin 2-like isoform b [Homo sapiens] 38 0.005
gi|191252814 RIMS binding protein 3B [Homo sapiens] 38 0.006
gi|191252806 RIMS binding protein 3C [Homo sapiens] 38 0.006
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 38 0.006
gi|153792195 DKFZP434H0735 protein [Homo sapiens] 38 0.006
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 38 0.006
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 38 0.006
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 38 0.006
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 38 0.006
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 38 0.006
>gi|93277074 ribonuclease P 25kDa subunit [Homo sapiens]
Length = 199
Score = 404 bits (1037), Expect = e-113
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MENFRKVRSEEAPAGCGAEGGGPGSGPFADLAPGAVHMRVKEGSKIRNLMAFATASMAQP 60
MENFRKVRSEEAPAGCGAEGGGPGSGPFADLAPGAVHMRVKEGSKIRNLMAFATASMAQP
Sbjct: 1 MENFRKVRSEEAPAGCGAEGGGPGSGPFADLAPGAVHMRVKEGSKIRNLMAFATASMAQP 60
Query: 61 ATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTQGQTPG 120
ATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTQGQTPG
Sbjct: 61 ATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTQGQTPG 120
Query: 121 EPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGE 180
EPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGE
Sbjct: 121 EPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGE 180
Query: 181 GSAKRSQPEPGVADEDQTA 199
GSAKRSQPEPGVADEDQTA
Sbjct: 181 GSAKRSQPEPGVADEDQTA 199
>gi|22325372 hypothetical protein LOC138716 [Homo sapiens]
Length = 163
Score = 132 bits (331), Expect = 3e-31
Identities = 73/172 (42%), Positives = 99/172 (57%), Gaps = 18/172 (10%)
Query: 1 MENFRKVRSEEAPAGCGAEGGGPGSGPFADLAPGAVHMRVKEGSKIRNLMAFATASMAQP 60
ME++RK S E PA P L P + MRV++GSKIRNL+ A +
Sbjct: 1 MEHYRKAGSVELPA----------PSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGG 50
Query: 61 ATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTQGQTPG 120
+ R +VFSG GRA K V+CAEI+KRR+ GLHQ+T+LR+ + W +P P G P
Sbjct: 51 SARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSW--VPASPDTGLDP- 107
Query: 121 EPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRS 172
L+V ++VP + +LLS+D LDP + GYQPP PG S P++ RS
Sbjct: 108 -----LTVRRHVPAVWVLLSRDPLDPNECGYQPPGAPPGLGSMPSSSCGPRS 154
>gi|22325370 hypothetical protein LOC138716 [Homo sapiens]
Length = 163
Score = 132 bits (331), Expect = 3e-31
Identities = 73/172 (42%), Positives = 99/172 (57%), Gaps = 18/172 (10%)
Query: 1 MENFRKVRSEEAPAGCGAEGGGPGSGPFADLAPGAVHMRVKEGSKIRNLMAFATASMAQP 60
ME++RK S E PA P L P + MRV++GSKIRNL+ A +
Sbjct: 1 MEHYRKAGSVELPA----------PSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGG 50
Query: 61 ATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTQGQTPG 120
+ R +VFSG GRA K V+CAEI+KRR+ GLHQ+T+LR+ + W +P P G P
Sbjct: 51 SARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSW--VPASPDTGLDP- 107
Query: 121 EPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRS 172
L+V ++VP + +LLS+D LDP + GYQPP PG S P++ RS
Sbjct: 108 -----LTVRRHVPAVWVLLSRDPLDPNECGYQPPGAPPGLGSMPSSSCGPRS 154
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 42.7 bits (99), Expect = 2e-04
Identities = 30/83 (36%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 110 PPGPTQGQTPGEPAASLSVLK--NVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAP 167
PPGP G PG P + L+ +PGL L + L P P +PP P PGP PP P
Sbjct: 423 PPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPR-LLPPGPPPGRPPGPPPGP--PPGLP 479
Query: 168 ASKRSLGEPAAGEGSAKRSQPEP 190
G P A P P
Sbjct: 480 PGPPPRGPPPRLPPPAPPGIPPP 502
Score = 34.7 bits (78), Expect = 0.055
Identities = 23/62 (37%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 109 LPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPN---PHPGPSSPPA 165
LPPGP G+ PG P PGL PR P PP P PG PP
Sbjct: 458 LPPGPPPGRPPGPPPGP------PPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPL 511
Query: 166 AP 167
P
Sbjct: 512 VP 513
Score = 31.6 bits (70), Expect = 0.47
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 13/68 (19%)
Query: 110 PPGPTQGQTPGEPA----------ASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPG 159
PPGP G PG P A + PG+ L P PG PP P P
Sbjct: 471 PPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLPN 530
Query: 160 P---SSPP 164
P S+PP
Sbjct: 531 PGVLSAPP 538
Score = 28.1 bits (61), Expect = 5.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 149 PGYQPPNPHPGPSSPPAAPASKRSLG 174
PG +PP P PGP P R +G
Sbjct: 195 PGRKPPGPPPGPPPPQVVQMYGRKVG 220
>gi|21071077 dishevelled-associated activator of morphogenesis 1
[Homo sapiens]
Length = 1078
Score = 42.0 bits (97), Expect = 3e-04
Identities = 39/108 (36%), Positives = 48/108 (44%), Gaps = 20/108 (18%)
Query: 89 AGLHQVTRLRYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQ 148
A LH+++R R V S+P GP+ G PG P S +VPG LL P
Sbjct: 513 AQLHELSR------RAVCASIPGGPSPG-APGGPFPS-----SVPGS--LLPPPPPPPLP 558
Query: 149 PGYQPPNPHP----GPSSPPAAPASKRSLGEPAAGEGSA--KRSQPEP 190
G PP P P GP PP P + P A G A K+S P+P
Sbjct: 559 GGMLPPPPPPLPPGGPPPPPGPPPLGAIMPPPGAPMGLALKKKSIPQP 606
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 41.6 bits (96), Expect = 4e-04
Identities = 45/192 (23%), Positives = 74/192 (38%), Gaps = 20/192 (10%)
Query: 8 RSEEAPAGCGAEGGGPGSGPFAD-LAPGAVHMRVKEGSKIRNLMAFATASMAQPATRAIV 66
+ ++ G GG G G F PG +++ +++ + +SM Q A +
Sbjct: 2173 QQQQQQGSAGMAGGMAGHGQFQQPQGPGGYPPAMQQQQRMQQHLPLQGSSMGQMAAQMGQ 2232
Query: 67 FSGCGR---ATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTQGQTPGEPA 123
G+ T + L++R+ Q+ + + Q P P Q G+P
Sbjct: 2233 LGQMGQPGLGADSTPNIQQALQQRILQQQQMKQ----QIGSPGQPNPMSPQQHMLSGQPQ 2288
Query: 124 ASLSVLKNVPG--LAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGEG 181
AS ++PG +A LS P Q P P S PP + S R +P+
Sbjct: 2289 AS-----HLPGQQIATSLSNQVRSPAP--VQSPRPQ---SQPPHSSPSPRIQPQPSPHHV 2338
Query: 182 SAKRSQPEPGVA 193
S + P PG+A
Sbjct: 2339 SPQTGSPHPGLA 2350
Score = 31.2 bits (69), Expect = 0.61
Identities = 45/196 (22%), Positives = 63/196 (32%), Gaps = 17/196 (8%)
Query: 3 NFRKVRSEEAPAGCGAEGGGPGSGPF--------ADLAPGAVHMRVKEGSKIRNLMAFAT 54
N R V + P+ A G P P A P V M + T
Sbjct: 1835 NTRNVPQQSLPSPTSAPPGTPTQQPSTPQTPQPPAQPQPSPVSMSPAGFPSVARTQPPTT 1894
Query: 55 ASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPT 114
S +P ++ + V A ++R + R+ + S+PPG T
Sbjct: 1895 VSTGKPTSQVPAPPPPAQPPPAAVEAARQIEREAQQQQHLYRVNINN------SMPPGRT 1948
Query: 115 QGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLG 174
TPG A +S+ NVP +S + PG P P P P S+
Sbjct: 1949 GMGTPGSQMAPVSL--NVP-RPNQVSGPVMPSMPPGQWQQAPLPQQQPMPGLPRPVISMQ 2005
Query: 175 EPAAGEGSAKRSQPEP 190
AA G S P
Sbjct: 2006 AQAAVAGPRMPSVQPP 2021
Score = 30.8 bits (68), Expect = 0.79
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 81 AEILKRRLAGLHQVTRLRYRSVREVWQSLPPG-----PTQGQTPGEPA------ASLSVL 129
A++++RR+A ++ TR + S PPG P+ QTP PA S+S
Sbjct: 1824 AQLMRRRMATMN--TRNVPQQSLPSPTSAPPGTPTQQPSTPQTPQPPAQPQPSPVSMSPA 1881
Query: 130 KNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPA 177
P +A + +P Q P P P PPAA + R + A
Sbjct: 1882 -GFPSVARTQPPTTVSTGKPTSQVPAPPPPAQPPPAAVEAARQIEREA 1928
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 41.6 bits (96), Expect = 4e-04
Identities = 45/192 (23%), Positives = 74/192 (38%), Gaps = 20/192 (10%)
Query: 8 RSEEAPAGCGAEGGGPGSGPFAD-LAPGAVHMRVKEGSKIRNLMAFATASMAQPATRAIV 66
+ ++ G GG G G F PG +++ +++ + +SM Q A +
Sbjct: 2211 QQQQQQGSAGMAGGMAGHGQFQQPQGPGGYPPAMQQQQRMQQHLPLQGSSMGQMAAQMGQ 2270
Query: 67 FSGCGR---ATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTQGQTPGEPA 123
G+ T + L++R+ Q+ + + Q P P Q G+P
Sbjct: 2271 LGQMGQPGLGADSTPNIQQALQQRILQQQQMKQ----QIGSPGQPNPMSPQQHMLSGQPQ 2326
Query: 124 ASLSVLKNVPG--LAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGEG 181
AS ++PG +A LS P Q P P S PP + S R +P+
Sbjct: 2327 AS-----HLPGQQIATSLSNQVRSPAP--VQSPRPQ---SQPPHSSPSPRIQPQPSPHHV 2376
Query: 182 SAKRSQPEPGVA 193
S + P PG+A
Sbjct: 2377 SPQTGSPHPGLA 2388
Score = 31.2 bits (69), Expect = 0.61
Identities = 45/196 (22%), Positives = 63/196 (32%), Gaps = 17/196 (8%)
Query: 3 NFRKVRSEEAPAGCGAEGGGPGSGPF--------ADLAPGAVHMRVKEGSKIRNLMAFAT 54
N R V + P+ A G P P A P V M + T
Sbjct: 1873 NTRNVPQQSLPSPTSAPPGTPTQQPSTPQTPQPPAQPQPSPVSMSPAGFPSVARTQPPTT 1932
Query: 55 ASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPT 114
S +P ++ + V A ++R + R+ + S+PPG T
Sbjct: 1933 VSTGKPTSQVPAPPPPAQPPPAAVEAARQIEREAQQQQHLYRVNINN------SMPPGRT 1986
Query: 115 QGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLG 174
TPG A +S+ NVP +S + PG P P P P S+
Sbjct: 1987 GMGTPGSQMAPVSL--NVP-RPNQVSGPVMPSMPPGQWQQAPLPQQQPMPGLPRPVISMQ 2043
Query: 175 EPAAGEGSAKRSQPEP 190
AA G S P
Sbjct: 2044 AQAAVAGPRMPSVQPP 2059
Score = 30.8 bits (68), Expect = 0.79
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 81 AEILKRRLAGLHQVTRLRYRSVREVWQSLPPG-----PTQGQTPGEPA------ASLSVL 129
A++++RR+A ++ TR + S PPG P+ QTP PA S+S
Sbjct: 1862 AQLMRRRMATMN--TRNVPQQSLPSPTSAPPGTPTQQPSTPQTPQPPAQPQPSPVSMSPA 1919
Query: 130 KNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPA 177
P +A + +P Q P P P PPAA + R + A
Sbjct: 1920 -GFPSVARTQPPTTVSTGKPTSQVPAPPPPAQPPPAAVEAARQIEREA 1966
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 40.4 bits (93), Expect = 0.001
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 108 SLPPGPTQG--QTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPA 165
SLP P++ +TPG P+A S + P L KD P +P PP P P +PP
Sbjct: 1102 SLPIRPSRAPSRTPGPPSAQSSPIDAQPATP-LPQKDPAQPLEPKRPPP---PRPVAPPT 1157
Query: 166 APASKRSLGEPAAGEGSAKR--------SQPEPGVADEDQTA 199
PA + P+ A + P PGVA + A
Sbjct: 1158 RPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSPGVARREMEA 1199
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 40.4 bits (93), Expect = 0.001
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 108 SLPPGPTQG--QTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPA 165
SLP P++ +TPG P+A S + P L KD P +P PP P P +PP
Sbjct: 1102 SLPIRPSRAPSRTPGPPSAQSSPIDAQPATP-LPQKDPAQPLEPKRPPP---PRPVAPPT 1157
Query: 166 APASKRSLGEPAAGEGSAKR--------SQPEPGVADEDQTA 199
PA + P+ A + P PGVA + A
Sbjct: 1158 RPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSPGVARREMEA 1199
>gi|148727370 immediate early response 5-like [Homo sapiens]
Length = 404
Score = 39.3 bits (90), Expect = 0.002
Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 30/136 (22%)
Query: 85 KRRLAGLHQVTRLRYRS-VREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSK-- 141
+ +L LHQ+ +L + + + P G G PA L +PG A L
Sbjct: 108 RHQLHQLHQLHQLHLQQQLHQHQHPAPRGCAAAAAAGAPAGGAGALSELPGCAALQPPHG 167
Query: 142 -----DALDPRQPGYQP---PNPHPGP-------------------SSPPAAPASKRSLG 174
L+P QPG P P P P P ++PPAA AS +
Sbjct: 168 APHRGQPLEPLQPGPAPLPLPLPPPAPAALCPRDPRAPAACSAPPGAAPPAAAASPPASP 227
Query: 175 EPAAGEGSAKRSQPEP 190
PA+ G + + P P
Sbjct: 228 APASSPGFYRGAYPTP 243
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 38.5 bits (88), Expect = 0.004
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 145 DPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGEGSAKRSQPEPG 191
DP PG PP P G PP P S G PA G A + P+PG
Sbjct: 1214 DPGSPGISPPGPR-GKKGPPGPPGSSGPPG-PAGATGRAPKDIPDPG 1258
Score = 34.3 bits (77), Expect = 0.072
Identities = 29/82 (35%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 110 PPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPAS 169
PPGP + P P S S G KD DP PG Q P PGP P AP
Sbjct: 1222 PPGPRGKKGPPGPPGS-SGPPGPAGATGRAPKDIPDPGPPGDQGP---PGPDGPRGAPG- 1276
Query: 170 KRSLGEPAAGEGSAKRSQPEPG 191
P GS + EPG
Sbjct: 1277 ------PPGLPGSVDLLRGEPG 1292
>gi|48717426 hypothetical protein LOC401565 [Homo sapiens]
Length = 317
Score = 38.5 bits (88), Expect = 0.004
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 28/149 (18%)
Query: 60 PATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPG-PTQGQT 118
P R V + GR T + +T + K + L +++ ++ + + QS PP P Q T
Sbjct: 25 PQLRYQVGNTYGRTTGQLLTDPSVQKSPCSVLSPMSKPKF--IEDFSQSKPPRVPCQDLT 82
Query: 119 PG--------EPAASLSVLKNVPGLAILLSKDALDP-------RQ----PGYQPPNPHPG 159
+P+ + +L +P L + DA +P RQ G+ P PHP
Sbjct: 83 EPYIPHYTSLKPSKNFEILGQLPPLEV----DAQEPPGVENIPRQILLPAGFTPDTPHP- 137
Query: 160 PSSPPAAPASKRSLGEPAAGEGSAKRSQP 188
PP R LG P GE + K + P
Sbjct: 138 -PCPPGRKGDSRDLGHPVYGEEAWKSATP 165
>gi|148276998 zinc finger protein 628 [Homo sapiens]
Length = 1055
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 102 VREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKD------ALDPRQPGYQPPN 155
V+EV ++LPPG T+ G P L ++++ P +L S + L P P
Sbjct: 947 VQEV-ETLPPGLTEPPATGPPGQKLLIIRSAPATELLDSSNTGGGTATLQLLAP--PPSG 1003
Query: 156 PHPGPSSPPAAPASKRSLGEPA-AGEG 181
P GP+ P APAS+ PA AG G
Sbjct: 1004 PASGPAGLPGAPASQMVQVVPAGAGPG 1030
Score = 27.3 bits (59), Expect = 8.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 152 QPPNPHPGPSSPPAAPA 168
QPP+P P P P AAPA
Sbjct: 333 QPPSPLPQPPPPAAAPA 349
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 38.1 bits (87), Expect = 0.005
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 110 PPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGY------QPPNPHPG-PSS 162
PP P+ P AA L L + LA++ +L PG PP+P P P
Sbjct: 907 PPCPSTSSFPSTTAAPLLSLASAFSLAVMTVAQSLLSPSPGLLSQSPPAPPSPLPSLPLP 966
Query: 163 PPAAPASKRSLGEPAA---GEGSAKRSQPEPGVA 193
PP AP + S A E S ++P PG A
Sbjct: 967 PPVAPGGQESPSPHTAEVESEASPPPARPLPGEA 1000
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 38.1 bits (87), Expect = 0.005
Identities = 33/87 (37%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 110 PPGPTQGQ-TPGEPAASLSVLKNVPGLAILLSKDALD--PRQPGYQPPNPHPGPSSPPAA 166
PPGP PGEP +VPG A L + P PG P PG PP
Sbjct: 907 PPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGR 966
Query: 167 PASKRSLGEPAAGEGSAKRSQPEPGVA 193
K SLGE AG K S+ PG A
Sbjct: 967 TGQKGSLGE--AGAPGHKGSKGAPGPA 991
Score = 28.5 bits (62), Expect = 3.9
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 110 PPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQ----PPNPHPGPSSPPA 165
PPGP PG P ++ PG P GY+ PP P PGP PP+
Sbjct: 1358 PPGPRG--YPGIPGPKGESIRGQPG-----PPGPQGPPGIGYEGRQGPPGP-PGPPGPPS 1409
Query: 166 APASKR 171
P R
Sbjct: 1410 FPGPHR 1415
Score = 27.7 bits (60), Expect = 6.7
Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 130 KNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPA----AGEGSAKR 185
K PG AL P Q G + GP P P K +G P G K
Sbjct: 1177 KGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKG 1236
Query: 186 SQPEPGVA 193
+ EPG A
Sbjct: 1237 EKGEPGDA 1244
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 38.1 bits (87), Expect = 0.005
Identities = 33/87 (37%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 110 PPGPTQGQ-TPGEPAASLSVLKNVPGLAILLSKDALD--PRQPGYQPPNPHPGPSSPPAA 166
PPGP PGEP +VPG A L + P PG P PG PP
Sbjct: 492 PPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGR 551
Query: 167 PASKRSLGEPAAGEGSAKRSQPEPGVA 193
K SLGE AG K S+ PG A
Sbjct: 552 TGQKGSLGE--AGAPGHKGSKGAPGPA 576
Score = 28.5 bits (62), Expect = 3.9
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 110 PPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQ----PPNPHPGPSSPPA 165
PPGP PG P ++ PG P GY+ PP P PGP PP+
Sbjct: 943 PPGPRG--YPGIPGPKGESIRGQPG-----PPGPQGPPGIGYEGRQGPPGP-PGPPGPPS 994
Query: 166 APASKR 171
P R
Sbjct: 995 FPGPHR 1000
Score = 27.7 bits (60), Expect = 6.7
Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 130 KNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPA----AGEGSAKR 185
K PG AL P Q G + GP P P K +G P G K
Sbjct: 762 KGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKG 821
Query: 186 SQPEPGVA 193
+ EPG A
Sbjct: 822 EKGEPGDA 829
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 38.1 bits (87), Expect = 0.005
Identities = 33/87 (37%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 110 PPGPTQGQ-TPGEPAASLSVLKNVPGLAILLSKDALD--PRQPGYQPPNPHPGPSSPPAA 166
PPGP PGEP +VPG A L + P PG P PG PP
Sbjct: 672 PPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGR 731
Query: 167 PASKRSLGEPAAGEGSAKRSQPEPGVA 193
K SLGE AG K S+ PG A
Sbjct: 732 TGQKGSLGE--AGAPGHKGSKGAPGPA 756
Score = 28.5 bits (62), Expect = 3.9
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 110 PPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQ----PPNPHPGPSSPPA 165
PPGP PG P ++ PG P GY+ PP P PGP PP+
Sbjct: 1123 PPGPRG--YPGIPGPKGESIRGQPG-----PPGPQGPPGIGYEGRQGPPGP-PGPPGPPS 1174
Query: 166 APASKR 171
P R
Sbjct: 1175 FPGPHR 1180
Score = 27.7 bits (60), Expect = 6.7
Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 130 KNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPA----AGEGSAKR 185
K PG AL P Q G + GP P P K +G P G K
Sbjct: 942 KGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKG 1001
Query: 186 SQPEPGVA 193
+ EPG A
Sbjct: 1002 EKGEPGDA 1009
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 38.1 bits (87), Expect = 0.005
Identities = 37/109 (33%), Positives = 45/109 (41%), Gaps = 16/109 (14%)
Query: 93 QVTRLRYRSVREVWQSLPPGPTQGQTPGEPAASL-SVLKNVPGLAILLSKDALDP----- 146
Q +R SV+ S P Q TPG+P A K+ PG A K P
Sbjct: 285 QADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPA----KPPAQPSGLTK 340
Query: 147 ---RQPG-YQPPNPHPGPSSPPAAPASKRSLGEPAAGEGSAKRSQPEPG 191
+QPG +PP PG + PPA P PA GS K S +PG
Sbjct: 341 PLAQQPGTVKPPVQPPGTTKPPAQPLGPAK--PPAQQTGSEKPSSEQPG 387
Score = 32.7 bits (73), Expect = 0.21
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 111 PGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNP------HPGPSSPP 164
PGPT+ + + PG S P +P Q P P PGP+ PP
Sbjct: 434 PGPTKTPVQQPGPGKIPAQQAGPGKT---SAQQTGPTKPPSQLPGPAKPPPQQPGPAKPP 490
Query: 165 AAPASKRSLGEPAAGEGSAKRSQPEPGVA 193
P S P+ GS K +PG A
Sbjct: 491 --PQQPGSAKPPSQQPGSTKPPPQQPGPA 517
Score = 32.3 bits (72), Expect = 0.27
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 146 PRQPGY-QPPNPHPGPSSPPA--------APASKRSLGEPAAGEGSAKRSQPEPGVA 193
P+QPG +PP+ PG + PP +P S P+ GSAK S +P A
Sbjct: 491 PQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPA 547
Score = 31.2 bits (69), Expect = 0.61
Identities = 20/79 (25%), Positives = 28/79 (35%)
Query: 110 PPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPAS 169
P P + P + S PG A + + P QP + P P A S
Sbjct: 491 PQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPS 550
Query: 170 KRSLGEPAAGEGSAKRSQP 188
+ +P + GS K QP
Sbjct: 551 AQQSTKPVSQTGSGKPLQP 569
Score = 29.6 bits (65), Expect = 1.8
Identities = 14/44 (31%), Positives = 17/44 (38%)
Query: 147 RQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGEGSAKRSQPEP 190
+QPG Q P PGP+ P + AG G Q P
Sbjct: 423 QQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGP 466
Score = 27.3 bits (59), Expect = 8.8
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 114 TQGQTPGEPAASLSVLKNVPGLAILLSK-------DALD-PRQPGYQPPNPHPGPSSPPA 165
T G+T G+ + + P ++ L +K +LD QP PP P P P PP
Sbjct: 2362 TSGETFGQEKPASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPPPPPPPPPP 2421
Query: 166 AP 167
P
Sbjct: 2422 PP 2423
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 38.1 bits (87), Expect = 0.005
Identities = 37/109 (33%), Positives = 45/109 (41%), Gaps = 16/109 (14%)
Query: 93 QVTRLRYRSVREVWQSLPPGPTQGQTPGEPAASL-SVLKNVPGLAILLSKDALDP----- 146
Q +R SV+ S P Q TPG+P A K+ PG A K P
Sbjct: 285 QADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPA----KPPAQPSGLTK 340
Query: 147 ---RQPG-YQPPNPHPGPSSPPAAPASKRSLGEPAAGEGSAKRSQPEPG 191
+QPG +PP PG + PPA P PA GS K S +PG
Sbjct: 341 PLAQQPGTVKPPVQPPGTTKPPAQPLGPAK--PPAQQTGSEKPSSEQPG 387
Score = 32.7 bits (73), Expect = 0.21
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 111 PGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNP------HPGPSSPP 164
PGPT+ + + PG S P +P Q P P PGP+ PP
Sbjct: 434 PGPTKTPVQQPGPGKIPAQQAGPGKT---SAQQTGPTKPPSQLPGPAKPPPQQPGPAKPP 490
Query: 165 AAPASKRSLGEPAAGEGSAKRSQPEPGVA 193
P S P+ GS K +PG A
Sbjct: 491 --PQQPGSAKPPSQQPGSTKPPPQQPGPA 517
Score = 32.3 bits (72), Expect = 0.27
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 146 PRQPGY-QPPNPHPGPSSPPA--------APASKRSLGEPAAGEGSAKRSQPEPGVA 193
P+QPG +PP+ PG + PP +P S P+ GSAK S +P A
Sbjct: 491 PQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPA 547
Score = 31.2 bits (69), Expect = 0.61
Identities = 20/79 (25%), Positives = 28/79 (35%)
Query: 110 PPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPAS 169
P P + P + S PG A + + P QP + P P A S
Sbjct: 491 PQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPS 550
Query: 170 KRSLGEPAAGEGSAKRSQP 188
+ +P + GS K QP
Sbjct: 551 AQQSTKPVSQTGSGKPLQP 569
Score = 29.6 bits (65), Expect = 1.8
Identities = 14/44 (31%), Positives = 17/44 (38%)
Query: 147 RQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGEGSAKRSQPEP 190
+QPG Q P PGP+ P + AG G Q P
Sbjct: 423 QQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGP 466
Score = 27.3 bits (59), Expect = 8.8
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 114 TQGQTPGEPAASLSVLKNVPGLAILLSK-------DALD-PRQPGYQPPNPHPGPSSPPA 165
T G+T G+ + + P ++ L +K +LD QP PP P P P PP
Sbjct: 2362 TSGETFGQEKPASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPPPPPPPPPP 2421
Query: 166 AP 167
P
Sbjct: 2422 PP 2423
>gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]
Length = 977
Score = 38.1 bits (87), Expect = 0.005
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 111 PGPTQGQTPG---EPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAP 167
P P++ TPG EP A S +I LS P +P +P P PGP +P
Sbjct: 553 PAPSRPVTPGGAPEPPAPPSAAAMTSTASIFLSA----PLRPSARPEAPAPGPGAPEPPS 608
Query: 168 ASKRSLGEPAAGEG 181
A ++ + PAA G
Sbjct: 609 AREQRISVPAARTG 622
>gi|50301232 synaptopodin 2-like isoform b [Homo sapiens]
Length = 753
Score = 38.1 bits (87), Expect = 0.005
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 111 PGPTQGQTPG---EPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAP 167
P P++ TPG EP A S +I LS P +P +P P PGP +P
Sbjct: 329 PAPSRPVTPGGAPEPPAPPSAAAMTSTASIFLSA----PLRPSARPEAPAPGPGAPEPPS 384
Query: 168 ASKRSLGEPAAGEG 181
A ++ + PAA G
Sbjct: 385 AREQRISVPAARTG 398
>gi|191252814 RIMS binding protein 3B [Homo sapiens]
Length = 1639
Score = 37.7 bits (86), Expect = 0.006
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 145 DPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGEGSAKRSQP 188
D PG + +P P P PP P++ R L P GEGS SQP
Sbjct: 316 DTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGS--ESQP 357
>gi|191252806 RIMS binding protein 3C [Homo sapiens]
Length = 1639
Score = 37.7 bits (86), Expect = 0.006
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 145 DPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGEGSAKRSQP 188
D PG + +P P P PP P++ R L P GEGS SQP
Sbjct: 316 DTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGS--ESQP 357
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 37.7 bits (86), Expect = 0.006
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 150 GYQPPNPHPGPSSPPAAPASKRSLGEPAAGEGSAKRSQPEPGVADED 196
G+ P+ +PG PP P K S G+P GS K + +PG+ D
Sbjct: 134 GFPGPDGYPGLLGPPGLPGQKGSKGDPVLAPGSFKGMKGDPGLPGLD 180
Score = 33.5 bits (75), Expect = 0.12
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 11/58 (18%)
Query: 119 PGEPAASL-SVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGE 175
PG P SL S++ PG DP +PG PGP+ PP P + G+
Sbjct: 1243 PGAPGISLPSLIAGQPG----------DPGRPGLDGERGRPGPAGPPGPPGPSSNQGD 1290
Score = 28.1 bits (61), Expect = 5.1
Identities = 30/96 (31%), Positives = 35/96 (36%), Gaps = 23/96 (23%)
Query: 111 PGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQ--------------PGYQPPNP 156
PGP PG P L L GL KD L +Q PG P+
Sbjct: 613 PGP-----PGLPGNGLPGLPGPRGLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSG 667
Query: 157 HPGPSSPPAAPASKRSLGEPAA-GEGSAKRSQPEPG 191
PG P P K S G P G+ + S+ EPG
Sbjct: 668 FPG---TPGFPGPKGSRGLPGTPGQPGSSGSKGEPG 700
Score = 28.1 bits (61), Expect = 5.1
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 111 PGPTQGQ----TPGEPAASLSVLKNVPGLAILLSKDALD-----------PRQPGYQPPN 155
PGP + TPG+P +S S K PG L+ L P PG +
Sbjct: 675 PGPKGSRGLPGTPGQPGSSGS--KGEPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKD 732
Query: 156 PHPGPSSPPAAPASKRSLGEPAAGEGSAKRSQPEPGV 192
PG P P SK + G+ E A Q G+
Sbjct: 733 GLPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGL 769
>gi|153792195 DKFZP434H0735 protein [Homo sapiens]
Length = 1639
Score = 37.7 bits (86), Expect = 0.006
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 145 DPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGEGSAKRSQP 188
D PG + +P P P PP P++ R L P GEGS SQP
Sbjct: 316 DTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGS--ESQP 357
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 37.7 bits (86), Expect = 0.006
Identities = 26/68 (38%), Positives = 27/68 (39%), Gaps = 20/68 (29%)
Query: 111 PGPTQGQTPGE--PAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPA 168
PGP PGE P LSV VPG PG P HPGP PP P
Sbjct: 636 PGP-----PGEAGPRGELSVSTPVPG-------------PPGPPGPPGHPGPQGPPGIPG 677
Query: 169 SKRSLGEP 176
S G+P
Sbjct: 678 SLGKCGDP 685
Score = 32.3 bits (72), Expect = 0.27
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 111 PGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASK 170
PG ++G PG P + PGL + K + QPG P H GP+ P AP S
Sbjct: 1056 PGYSEGTRPGPPGPT-----GDPGLPGDMGKKG-EMGQPG---PPGHLGPAGPEGAPGSP 1106
Query: 171 RSLGEP 176
S G P
Sbjct: 1107 GSPGLP 1112
Score = 30.0 bits (66), Expect = 1.4
Identities = 33/93 (35%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 110 PPGPTQGQTP-GEPAASLSVLK-NVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAP 167
PPGP P G P S+ K PGL D +P PG P P PGP P
Sbjct: 660 PPGPPGHPGPQGPPGIPGSLGKCGDPGLP---GPDG-EPGIPGIGFPGP-PGPKGDQGFP 714
Query: 168 ASKRSLGEPA-AGEGSAKRSQPEPGVADEDQTA 199
+K SLG P GE PG E A
Sbjct: 715 GTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVA 747
Score = 29.3 bits (64), Expect = 2.3
Identities = 28/97 (28%), Positives = 30/97 (30%), Gaps = 26/97 (26%)
Query: 110 PPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPN-------PHPGPSS 162
P GP GEP L + VPG P PG P P PGP
Sbjct: 612 PAGPPGYGPQGEPG--LQGTQGVPGA----------PGPPGEAGPRGELSVSTPVPGPPG 659
Query: 163 PPAAPASKRSLGEPAAGEGSAKRSQP-------EPGV 192
PP P G P K P EPG+
Sbjct: 660 PPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGI 696
Score = 29.3 bits (64), Expect = 2.3
Identities = 25/84 (29%), Positives = 28/84 (33%), Gaps = 22/84 (26%)
Query: 108 SLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAP 167
SLP P TPGEP +PG P + GP P P
Sbjct: 1355 SLPGSPGPPGTPGEPGMQ---------------------GEPGPPGPPGNLGPCGPRGKP 1393
Query: 168 ASKRSLGEPA-AGEGSAKRSQPEP 190
G P AGE K S+ EP
Sbjct: 1394 GKDGKPGTPGPAGEKGNKGSKGEP 1417
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 37.7 bits (86), Expect = 0.006
Identities = 26/68 (38%), Positives = 27/68 (39%), Gaps = 20/68 (29%)
Query: 111 PGPTQGQTPGE--PAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPA 168
PGP PGE P LSV VPG PG P HPGP PP P
Sbjct: 636 PGP-----PGEAGPRGELSVSTPVPG-------------PPGPPGPPGHPGPQGPPGIPG 677
Query: 169 SKRSLGEP 176
S G+P
Sbjct: 678 SLGKCGDP 685
Score = 34.3 bits (77), Expect = 0.072
Identities = 28/90 (31%), Positives = 31/90 (34%), Gaps = 22/90 (24%)
Query: 108 SLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAP 167
SLP P TPGEP +PG P + GP P P
Sbjct: 1355 SLPGSPGPPGTPGEPGMQ---------------------GEPGPPGPPGNLGPCGPRGKP 1393
Query: 168 ASKRSLGEPA-AGEGSAKRSQPEPGVADED 196
G P AGE K S+ EPG A D
Sbjct: 1394 GKDGKPGTPGPAGEKGNKGSKGEPGPAGSD 1423
Score = 32.3 bits (72), Expect = 0.27
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 111 PGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASK 170
PG ++G PG P + PGL + K + QPG P H GP+ P AP S
Sbjct: 1056 PGYSEGTRPGPPGPT-----GDPGLPGDMGKKG-EMGQPG---PPGHLGPAGPEGAPGSP 1106
Query: 171 RSLGEP 176
S G P
Sbjct: 1107 GSPGLP 1112
Score = 30.0 bits (66), Expect = 1.4
Identities = 33/93 (35%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 110 PPGPTQGQTP-GEPAASLSVLK-NVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAP 167
PPGP P G P S+ K PGL D +P PG P P PGP P
Sbjct: 660 PPGPPGHPGPQGPPGIPGSLGKCGDPGLP---GPDG-EPGIPGIGFPGP-PGPKGDQGFP 714
Query: 168 ASKRSLGEPA-AGEGSAKRSQPEPGVADEDQTA 199
+K SLG P GE PG E A
Sbjct: 715 GTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVA 747
Score = 29.3 bits (64), Expect = 2.3
Identities = 28/97 (28%), Positives = 30/97 (30%), Gaps = 26/97 (26%)
Query: 110 PPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPN-------PHPGPSS 162
P GP GEP L + VPG P PG P P PGP
Sbjct: 612 PAGPPGYGPQGEPG--LQGTQGVPGA----------PGPPGEAGPRGELSVSTPVPGPPG 659
Query: 163 PPAAPASKRSLGEPAAGEGSAKRSQP-------EPGV 192
PP P G P K P EPG+
Sbjct: 660 PPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGI 696
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 37.7 bits (86), Expect = 0.006
Identities = 26/68 (38%), Positives = 27/68 (39%), Gaps = 20/68 (29%)
Query: 111 PGPTQGQTPGE--PAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPA 168
PGP PGE P LSV VPG PG P HPGP PP P
Sbjct: 636 PGP-----PGEAGPRGELSVSTPVPG-------------PPGPPGPPGHPGPQGPPGIPG 677
Query: 169 SKRSLGEP 176
S G+P
Sbjct: 678 SLGKCGDP 685
Score = 34.3 bits (77), Expect = 0.072
Identities = 28/90 (31%), Positives = 31/90 (34%), Gaps = 22/90 (24%)
Query: 108 SLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAP 167
SLP P TPGEP +PG P + GP P P
Sbjct: 1355 SLPGSPGPPGTPGEPGMQ---------------------GEPGPPGPPGNLGPCGPRGKP 1393
Query: 168 ASKRSLGEPA-AGEGSAKRSQPEPGVADED 196
G P AGE K S+ EPG A D
Sbjct: 1394 GKDGKPGTPGPAGEKGNKGSKGEPGPAGSD 1423
Score = 32.3 bits (72), Expect = 0.27
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 111 PGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASK 170
PG ++G PG P + PGL + K + QPG P H GP+ P AP S
Sbjct: 1056 PGYSEGTRPGPPGPT-----GDPGLPGDMGKKG-EMGQPG---PPGHLGPAGPEGAPGSP 1106
Query: 171 RSLGEP 176
S G P
Sbjct: 1107 GSPGLP 1112
Score = 30.0 bits (66), Expect = 1.4
Identities = 33/93 (35%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 110 PPGPTQGQTP-GEPAASLSVLK-NVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAP 167
PPGP P G P S+ K PGL D +P PG P P PGP P
Sbjct: 660 PPGPPGHPGPQGPPGIPGSLGKCGDPGLP---GPDG-EPGIPGIGFPGP-PGPKGDQGFP 714
Query: 168 ASKRSLGEPA-AGEGSAKRSQPEPGVADEDQTA 199
+K SLG P GE PG E A
Sbjct: 715 GTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVA 747
Score = 29.3 bits (64), Expect = 2.3
Identities = 28/97 (28%), Positives = 30/97 (30%), Gaps = 26/97 (26%)
Query: 110 PPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPN-------PHPGPSS 162
P GP GEP L + VPG P PG P P PGP
Sbjct: 612 PAGPPGYGPQGEPG--LQGTQGVPGA----------PGPPGEAGPRGELSVSTPVPGPPG 659
Query: 163 PPAAPASKRSLGEPAAGEGSAKRSQP-------EPGV 192
PP P G P K P EPG+
Sbjct: 660 PPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGI 696
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 37.7 bits (86), Expect = 0.006
Identities = 26/68 (38%), Positives = 27/68 (39%), Gaps = 20/68 (29%)
Query: 111 PGPTQGQTPGE--PAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPA 168
PGP PGE P LSV VPG PG P HPGP PP P
Sbjct: 636 PGP-----PGEAGPRGELSVSTPVPG-------------PPGPPGPPGHPGPQGPPGIPG 677
Query: 169 SKRSLGEP 176
S G+P
Sbjct: 678 SLGKCGDP 685
Score = 34.3 bits (77), Expect = 0.072
Identities = 28/90 (31%), Positives = 31/90 (34%), Gaps = 22/90 (24%)
Query: 108 SLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAP 167
SLP P TPGEP +PG P + GP P P
Sbjct: 1355 SLPGSPGPPGTPGEPGMQ---------------------GEPGPPGPPGNLGPCGPRGKP 1393
Query: 168 ASKRSLGEPA-AGEGSAKRSQPEPGVADED 196
G P AGE K S+ EPG A D
Sbjct: 1394 GKDGKPGTPGPAGEKGNKGSKGEPGPAGSD 1423
Score = 32.3 bits (72), Expect = 0.27
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 111 PGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASK 170
PG ++G PG P + PGL + K + QPG P H GP+ P AP S
Sbjct: 1056 PGYSEGTRPGPPGPT-----GDPGLPGDMGKKG-EMGQPG---PPGHLGPAGPEGAPGSP 1106
Query: 171 RSLGEP 176
S G P
Sbjct: 1107 GSPGLP 1112
Score = 30.0 bits (66), Expect = 1.4
Identities = 33/93 (35%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 110 PPGPTQGQTP-GEPAASLSVLK-NVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAP 167
PPGP P G P S+ K PGL D +P PG P P PGP P
Sbjct: 660 PPGPPGHPGPQGPPGIPGSLGKCGDPGLP---GPDG-EPGIPGIGFPGP-PGPKGDQGFP 714
Query: 168 ASKRSLGEPA-AGEGSAKRSQPEPGVADEDQTA 199
+K SLG P GE PG E A
Sbjct: 715 GTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVA 747
Score = 29.3 bits (64), Expect = 2.3
Identities = 28/97 (28%), Positives = 30/97 (30%), Gaps = 26/97 (26%)
Query: 110 PPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPN-------PHPGPSS 162
P GP GEP L + VPG P PG P P PGP
Sbjct: 612 PAGPPGYGPQGEPG--LQGTQGVPGA----------PGPPGEAGPRGELSVSTPVPGPPG 659
Query: 163 PPAAPASKRSLGEPAAGEGSAKRSQP-------EPGV 192
PP P G P K P EPG+
Sbjct: 660 PPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGI 696
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 37.7 bits (86), Expect = 0.006
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 150 GYQPPNPHPGPSSPPAAPASKRSLGEPAAGEGSAKRSQPEPGVADED 196
G+ P+ +PG PP P K S G+P GS K + +PG+ D
Sbjct: 133 GFPGPDGYPGLLGPPGLPGQKGSKGDPVLAPGSFKGMKGDPGLPGLD 179
Score = 33.5 bits (75), Expect = 0.12
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 11/58 (18%)
Query: 119 PGEPAASL-SVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGE 175
PG P SL S++ PG DP +PG PGP+ PP P + G+
Sbjct: 1242 PGAPGISLPSLIAGQPG----------DPGRPGLDGERGRPGPAGPPGPPGPSSNQGD 1289
Score = 28.1 bits (61), Expect = 5.1
Identities = 30/96 (31%), Positives = 35/96 (36%), Gaps = 23/96 (23%)
Query: 111 PGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQ--------------PGYQPPNP 156
PGP PG P L L GL KD L +Q PG P+
Sbjct: 612 PGP-----PGLPGNGLPGLPGPRGLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSG 666
Query: 157 HPGPSSPPAAPASKRSLGEPAA-GEGSAKRSQPEPG 191
PG P P K S G P G+ + S+ EPG
Sbjct: 667 FPG---TPGFPGPKGSRGLPGTPGQPGSSGSKGEPG 699
Score = 28.1 bits (61), Expect = 5.1
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 111 PGPTQGQ----TPGEPAASLSVLKNVPGLAILLSKDALD-----------PRQPGYQPPN 155
PGP + TPG+P +S S K PG L+ L P PG +
Sbjct: 674 PGPKGSRGLPGTPGQPGSSGS--KGEPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKD 731
Query: 156 PHPGPSSPPAAPASKRSLGEPAAGEGSAKRSQPEPGV 192
PG P P SK + G+ E A Q G+
Sbjct: 732 GLPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGL 768
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,861,691
Number of Sequences: 37866
Number of extensions: 671020
Number of successful extensions: 9696
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 639
Number of HSP's that attempted gapping in prelim test: 6372
Number of HSP's gapped (non-prelim): 3426
length of query: 199
length of database: 18,247,518
effective HSP length: 97
effective length of query: 102
effective length of database: 14,574,516
effective search space: 1486600632
effective search space used: 1486600632
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.