Guide to the Human Genome
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Name: RIMBP3C Sequence: fasta or formatted (1639aa) NCBI GI: 191252806
Description:

RIMS binding protein 3C

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0        147           3
 C cysteine            2.6         42           1
 D aspartate           4.3         71           2
 E glutamate           8.5        139           3
 F phenylalanine       1.8         30           2
 G glycine             7.4        122           2
 H histidine           2.4         40           2
 I isoleucine          1.5         25           2
 K lysine              3.6         59           2
 L leucine            10.9        179           2
 M methionine          1.6         26           1
 N asparagine          1.9         31           1
 P proline             7.9        130           6
 Q glutamine           7.5        123           3
 R arginine            8.4        137           3
 S serine              8.5        140           3
 T threonine           3.5         58           1
 V valine              5.4         88           2
 W tryptophan          1.4         23           1
 Y tyrosine            1.8         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RIMS binding protein 3C 
RIMBP3B               0.999   RIMS binding protein 3B 
RIMBP3                0.992   DKFZP434H0735 protein 
BZRAP1                0.104   peripheral benzodiazepine receptor-associated prote...
RIMBP2                0.085   RIM-binding protein 2 
BZRAP1                0.074   peripheral benzodiazepine receptor-associated prote...
MAP4K4                0.016   mitogen-activated protein kinase kinase kinase kinas...
PLEC1                 0.015   plectin 1 isoform 11 
PLEC1                 0.015   plectin 1 isoform 10 
PLEC1                 0.015   plectin 1 isoform 8 
PLEC1                 0.015   plectin 1 isoform 7 
PLEC1                 0.015   plectin 1 isoform 6 
PLEC1                 0.015   plectin 1 isoform 3 
PLEC1                 0.015   plectin 1 isoform 2 
PLEC1                 0.015   plectin 1 isoform 1 
MAP4K4                0.014   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.014   mitogen-activated protein kinase kinase kinase kinas...
ENAH                  0.011   enabled homolog isoform a 
ENAH                  0.011   enabled homolog isoform b 
JAKMIP3               0.011   Janus kinase and microtubule interacting protein 3 ...
GIGYF2                0.011   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.011   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.011   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.011   GRB10 interacting GYF protein 2 isoform b 
TCHH                  0.011   trichohyalin 
TNIK                  0.010   TRAF2 and NCK interacting kinase isoform 6 
TNIK                  0.010   TRAF2 and NCK interacting kinase isoform 5 
TNIK                  0.010   TRAF2 and NCK interacting kinase isoform 2 
TNIK                  0.010   TRAF2 and NCK interacting kinase isoform 1 
SFRS17A               0.010   DNA segment on chromosome X and Y (unique) 155 expre...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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