Guide to the Human Genome
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Name: C9orf23 Sequence: fasta or formatted (163aa) NCBI GI: 22325370
Description:

hypothetical protein LOC138716

Not currently referenced in the text

Other entries for this name:
alt mRNA {163aa} hypothetical protein LOC138716
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         12           2
 C cysteine            1.8          3           1
 D aspartate           4.9          8           1
 E glutamate           4.3          7           1
 F phenylalanine       1.2          2           1
 G glycine             9.8         16           2
 H histidine           2.5          4           1
 I isoleucine          1.2          2           1
 K lysine              3.1          5           1
 L leucine            11.0         18           2
 M methionine          2.5          4           1
 N asparagine          1.2          2           1
 P proline            11.7         19           2
 Q glutamine           2.5          4           1
 R arginine           11.7         19           3
 S serine              9.8         16           3
 T threonine           3.7          6           1
 V valine              7.4         12           2
 W tryptophan          1.2          2           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC138716 
C9orf23               1.000   hypothetical protein LOC138716 
RPP25                 0.344   ribonuclease P 25kDa subunit 
IER5L                 0.029   immediate early response 5-like 
ZNF324                0.029   zinc finger protein 324 
ZFP36L2               0.019   zinc finger protein 36, C3H type-like 2 
LOC100288869          0.016   PREDICTED: hypothetical protein XP_002343771 
LGR5                  0.016   leucine-rich repeat-containing G protein-coupled rece...
TMEM132A              0.016   transmembrane protein 132A isoform a 
TMEM132A              0.016   transmembrane protein 132A isoform b 
KIF1C                 0.016   kinesin family member 1C 
TIGD5                 0.013   tigger transposable element derived 5 
CASKIN1               0.013   CASK interacting protein 1 
ADAM33                0.013   ADAM metallopeptidase domain 33 isoform alpha prepro...
ADAM33                0.013   ADAM metallopeptidase domain 33 isoform beta preprop...
C14orf4               0.013   chromosome 14 open reading frame 4 
PLK1                  0.010   polo-like kinase 1 
MZF1                  0.010   zinc finger protein 42 isoform 2 
MZF1                  0.010   zinc finger protein 42 isoform 1 
NRG2                  0.010   neuregulin 2 isoform 2 
NRG2                  0.010   neuregulin 2 isoform 4 
NRG2                  0.010   neuregulin 2 isoform 3 
NRG2                  0.010   neuregulin 2 isoform 1 
WIPF3                 0.010   WAS/WASL interacting protein family, member 3 [Homo...
HCN2                  0.010   hyperpolarization activated cyclic nucleotide-gated...
TLE1                  0.010   transducin-like enhancer protein 1 
FAM155B               0.010   transmembrane protein 28 
TYMP                  0.010   endothelial cell growth factor 1 (platelet-derived)...
TYMP                  0.010   endothelial cell growth factor 1 (platelet-derived) p...
TYMP                  0.010   endothelial cell growth factor 1 (platelet-derived)...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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