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Search of human proteins with 93102391
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|93102391 hypothetical protein LOC84326 isoform b [Homo
sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|93102391 hypothetical protein LOC84326 isoform b [Homo sapiens] 433 e-122
gi|93102401 hypothetical protein LOC84326 isoform g [Homo sapiens] 382 e-106
gi|93102387 hypothetical protein LOC84326 isoform a [Homo sapiens] 289 1e-78
gi|93102395 hypothetical protein LOC84326 isoform d [Homo sapiens] 134 5e-32
gi|93102393 hypothetical protein LOC84326 isoform c [Homo sapiens] 134 5e-32
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 33 0.13
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 33 0.13
gi|30089916 phosphofurin acidic cluster sorting protein 1 [Homo ... 33 0.13
gi|118572599 formin homology 2 domain containing 1 [Homo sapiens] 33 0.22
gi|34452695 amiloride-sensitive cation channel 1, neuronal isofo... 32 0.38
gi|150418009 transforming, acidic coiled-coil containing protein... 32 0.49
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 31 0.84
gi|239756116 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo ... 30 1.1
gi|209413756 synapsin III isoform IIIg [Homo sapiens] 30 1.1
gi|209413752 synapsin III isoform IIIa [Homo sapiens] 30 1.1
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 30 1.1
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 30 1.4
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 30 1.4
gi|84626580 hypothetical protein LOC80178 [Homo sapiens] 30 1.4
gi|23397672 homeobox D4 [Homo sapiens] 29 2.4
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 29 2.4
gi|25777598 diacylglycerol kinase, delta 130kDa isoform 2 [Homo ... 29 2.4
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 29 2.4
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 29 2.4
gi|6631075 BCL2-associated athanogene 4 [Homo sapiens] 29 2.4
gi|42560248 POU domain, class 5, transcription factor 1 isoform ... 29 3.2
gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo ... 29 3.2
gi|148613882 homeobox A4 [Homo sapiens] 28 4.2
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 28 4.2
>gi|93102391 hypothetical protein LOC84326 isoform b [Homo sapiens]
Length = 205
Score = 433 bits (1114), Expect = e-122
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60
MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD
Sbjct: 1 MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60
Query: 61 QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTE 120
QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTE
Sbjct: 61 QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTE 120
Query: 121 GLFRAAGHLLKPRALLITYGEPRMGASGHSPPGGPGKGQWPAPGEDGGHASQQQMPDLPE 180
GLFRAAGHLLKPRALLITYGEPRMGASGHSPPGGPGKGQWPAPGEDGGHASQQQMPDLPE
Sbjct: 121 GLFRAAGHLLKPRALLITYGEPRMGASGHSPPGGPGKGQWPAPGEDGGHASQQQMPDLPE 180
Query: 181 KLSPSFTPAHLHPCRRLCEARTLPP 205
KLSPSFTPAHLHPCRRLCEARTLPP
Sbjct: 181 KLSPSFTPAHLHPCRRLCEARTLPP 205
>gi|93102401 hypothetical protein LOC84326 isoform g [Homo sapiens]
Length = 185
Score = 382 bits (981), Expect = e-106
Identities = 185/205 (90%), Positives = 185/205 (90%), Gaps = 20/205 (9%)
Query: 1 MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60
MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD
Sbjct: 1 MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60
Query: 61 QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTE 120
QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTE
Sbjct: 61 QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTE 120
Query: 121 GLFRAAGHLLKPRALLITYGEPRMGASGHSPPGGPGKGQWPAPGEDGGHASQQQMPDLPE 180
EPRMGASGHSPPGGPGKGQWPAPGEDGGHASQQQMPDLPE
Sbjct: 121 --------------------EPRMGASGHSPPGGPGKGQWPAPGEDGGHASQQQMPDLPE 160
Query: 181 KLSPSFTPAHLHPCRRLCEARTLPP 205
KLSPSFTPAHLHPCRRLCEARTLPP
Sbjct: 161 KLSPSFTPAHLHPCRRLCEARTLPP 185
>gi|93102387 hypothetical protein LOC84326 isoform a [Homo sapiens]
Length = 204
Score = 289 bits (740), Expect = 1e-78
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60
MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD
Sbjct: 1 MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60
Query: 61 QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTE 120
QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTE
Sbjct: 61 QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTE 120
Query: 121 GLFRAAGHLLKPRALLITYG 140
GLFRAAGHLLKPRALLITYG
Sbjct: 121 GLFRAAGHLLKPRALLITYG 140
>gi|93102395 hypothetical protein LOC84326 isoform d [Homo
sapiens]
Length = 127
Score = 134 bits (337), Expect = 5e-32
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60
MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD
Sbjct: 1 MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60
Query: 61 QRCLD 65
QRCLD
Sbjct: 61 QRCLD 65
>gi|93102393 hypothetical protein LOC84326 isoform c [Homo
sapiens]
Length = 107
Score = 134 bits (337), Expect = 5e-32
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60
MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD
Sbjct: 1 MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60
Query: 61 QRCLD 65
QRCLD
Sbjct: 61 QRCLD 65
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 33.5 bits (75), Expect = 0.13
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 121 GLFRAAGHLLKPRALLITYG----EPRMGASGHSPPGGPGKGQWPAPGEDGGHASQQQMP 176
GL R AG A L++ G EPR G + PG GQW E G +
Sbjct: 150 GLHRGAG------ARLLSNGHSAPEPRAGPANRLAGSPPGSGQWKPKVESGDPSLHPPPS 203
Query: 177 DLPEKLSPSFTPAHLHPCRRLC 198
+P+ PA P +R C
Sbjct: 204 PGTPSATPASPPASATPSQRQC 225
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 33.5 bits (75), Expect = 0.13
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 121 GLFRAAGHLLKPRALLITYG----EPRMGASGHSPPGGPGKGQWPAPGEDGGHASQQQMP 176
GL R AG A L++ G EPR G + PG GQW E G +
Sbjct: 150 GLHRGAG------ARLLSNGHSAPEPRAGPANRLAGSPPGSGQWKPKVESGDPSLHPPPS 203
Query: 177 DLPEKLSPSFTPAHLHPCRRLC 198
+P+ PA P +R C
Sbjct: 204 PGTPSATPASPPASATPSQRQC 225
>gi|30089916 phosphofurin acidic cluster sorting protein 1 [Homo
sapiens]
Length = 963
Score = 33.5 bits (75), Expect = 0.13
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 146 ASGHSPPGGPGKGQWPAP 163
ASG +PPGGPG G+ PAP
Sbjct: 81 ASGSAPPGGPGPGRTPAP 98
>gi|118572599 formin homology 2 domain containing 1 [Homo sapiens]
Length = 1164
Score = 32.7 bits (73), Expect = 0.22
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 163 PGEDGGHASQQQMPDLPEKLSPSFTPAHLHPCRRLCEARTLPP 205
P E GGH +Q+ D PE + TP PC L R+L P
Sbjct: 471 PNEAGGHPDARQLWDSPETAPAARTPQSPAPCVLLRAQRSLAP 513
>gi|34452695 amiloride-sensitive cation channel 1, neuronal isoform
1 [Homo sapiens]
Length = 563
Score = 32.0 bits (71), Expect = 0.38
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 132 PRALLITYGEPRMGASGHSPPGGPGKGQWPAPGEDGGHASQQQMPDLPEKLSPSFTPAHL 191
P A L G RM +P GQ PG G Q P + + PS + A L
Sbjct: 10 PAAALTGPGRFRMAREEPAPAALAAAGQ---PGGGRGGERALQGPGVARRGRPSLSRAKL 66
Query: 192 HPCRRLCEART 202
H R +C RT
Sbjct: 67 HGLRHMCAGRT 77
>gi|150418009 transforming, acidic coiled-coil containing protein 2
isoform a [Homo sapiens]
Length = 2948
Score = 31.6 bits (70), Expect = 0.49
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 144 MGASGHSPPGGPGKGQWPAPGEDGGHASQQQMPDLPEKLSPSFTP 188
+G+ G P G PG+ P+P E G H + +Q ++ + P P
Sbjct: 475 LGSKGEHPEGDPGEVPAPSPQERGEHLNTEQSHEVQPGVPPPPLP 519
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 30.8 bits (68), Expect = 0.84
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 123 FRAAGHLLKPRALLITYGEPRMGASGHSPPGGPGKGQWPAPGEDGGHASQQQMPDLPEKL 182
F G P L+ G+ GA G PP PG+G P G+ G + P +
Sbjct: 918 FNQEGQSTGPPPLIPGLGQ--QGAQGRIPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRH 975
Query: 183 SPSFTPAH 190
S P H
Sbjct: 976 EQSGGPEH 983
>gi|239756116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 30.4 bits (67), Expect = 1.1
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 129 LLKPRALLITYGEP----RMGASGHSPPGG----PGKGQWPAPGEDGGHASQQQMPDLPE 180
LL PRAL + EP R G PP G PG G PG D + P L
Sbjct: 20 LLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGT 79
Query: 181 KLSPS 185
+ SP+
Sbjct: 80 RSSPA 84
>gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo
sapiens]
Length = 194
Score = 30.4 bits (67), Expect = 1.1
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 129 LLKPRALLITYGEP----RMGASGHSPPGG----PGKGQWPAPGEDGGHASQQQMPDLPE 180
LL PRAL + EP R G PP G PG G PG D + P L
Sbjct: 20 LLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGT 79
Query: 181 KLSPS 185
+ SP+
Sbjct: 80 RSSPA 84
>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
Length = 579
Score = 30.4 bits (67), Expect = 1.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 142 PRMGASGHSPP--GGPGKGQWPAPGEDGGHASQQQMPDLPEKLSP 184
P++G PP GGP + Q P P G + Q+ P + LSP
Sbjct: 426 PQLGQPQPRPPPQGGPRQAQSPQPQRSGSPSQQRLSPQGQQPLSP 470
>gi|209413752 synapsin III isoform IIIa [Homo sapiens]
Length = 580
Score = 30.4 bits (67), Expect = 1.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 142 PRMGASGHSPP--GGPGKGQWPAPGEDGGHASQQQMPDLPEKLSP 184
P++G PP GGP + Q P P G + Q+ P + LSP
Sbjct: 427 PQLGQPQPRPPPQGGPRQAQSPQPQRSGSPSQQRLSPQGQQPLSP 471
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 30.4 bits (67), Expect = 1.1
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 145 GASGHSPPGGPGKGQWPAPGEDGGHASQQQMPDLPEK-LSPSFTPAHLHPCRRLCEARTL 203
GA G G G A G DGG A + PD PE P+ PA L +
Sbjct: 73 GAGDTDEEGAAGDGAAAAGGADGGAAPEPVPPDGPEAGAPPTLAPAVAPGSLPLLDPNAS 132
Query: 204 PP 205
PP
Sbjct: 133 PP 134
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 30.0 bits (66), Expect = 1.4
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 133 RALLITYGEPRMGASGHSPPGGPGKGQWPAPGEDGGHASQQQ------MPDL---PEKLS 183
R L+ G A SPP GPG+ P+PG G Q+ PD+ P+ +
Sbjct: 125 RPPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIP 184
Query: 184 PSFTPAHLHPCRRLCEARTLPP 205
P P+ P + R PP
Sbjct: 185 PP-VPSTPRPIQSSPHNRGSPP 205
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 30.0 bits (66), Expect = 1.4
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 133 RALLITYGEPRMGASGHSPPGGPGKGQWPAPGEDGGHASQQQ------MPDL---PEKLS 183
R L+ G A SPP GPG+ P+PG G Q+ PD+ P+ +
Sbjct: 125 RPPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIP 184
Query: 184 PSFTPAHLHPCRRLCEARTLPP 205
P P+ P + R PP
Sbjct: 185 PP-VPSTPRPIQSSPHNRGSPP 205
>gi|84626580 hypothetical protein LOC80178 [Homo sapiens]
Length = 433
Score = 30.0 bits (66), Expect = 1.4
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 22/104 (21%)
Query: 99 PQSLDLLLCINMAHVSPLRCTEGLFRAAGH----LLKPRALLITYGEPRMGASGHSPPGG 154
PQ L L + A +R G+ +A LK R+++ + G + +PP
Sbjct: 71 PQDLKELEFLTQALEKAVRVRRGITKAGERDKAPSLKSRSIVTS-----SGTTASAPPHS 125
Query: 155 PGKGQWPAPGEDGGHASQQQMPDLPEK-LSPSFTPAHLHPCRRL 197
PG+ GGHAS + P K L + PA HP RRL
Sbjct: 126 PGQA--------GGHASDTR----PTKGLRQTTVPAKGHPERRL 157
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 29.3 bits (64), Expect = 2.4
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 26/92 (28%)
Query: 139 YGEPRMGASGHSP------------PGGPGKGQWPAPGE-------------DGGHASQQ 173
+GE G SG P PGGPG G + APGE G A Q
Sbjct: 57 FGEQPFGGSGPGPGSALPARGHGQEPGGPG-GHYAAPGEPCPAPPAPPPAPLPGARAYSQ 115
Query: 174 QMPDLPEKLSPSFTPAHLHPCRRLCEARTLPP 205
P P + PA ++P + ++ P
Sbjct: 116 SDPKQPPSGTALKQPAVVYPWMKKVHVNSVNP 147
>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
Length = 1894
Score = 29.3 bits (64), Expect = 2.4
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 148 GHSPPGGPGKGQWPAPGEDGGHASQQQMPDLPEKLSPSFTPAHLHP 193
GHSP PG A A QQ P +P +++P P P
Sbjct: 962 GHSPKAQPGSTDRHASPARPPAARSQQHPSVPRRMTPGRAPQQQPP 1007
>gi|25777598 diacylglycerol kinase, delta 130kDa isoform 2 [Homo
sapiens]
Length = 1214
Score = 29.3 bits (64), Expect = 2.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 144 MGASGHSPPGGPGKGQWPAPGEDGGHASQQQMPDLPEKL 182
M A+ +PP GP + P P E+ + + P P+KL
Sbjct: 1 MAAAAGAPPPGPPQPPPPPPPEESSDSEPEAEPGSPQKL 39
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 29.3 bits (64), Expect = 2.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 148 GHSPPGGPGKGQWPAPGEDGGHASQQQMP 176
G P GPG G P PG GH+ + +P
Sbjct: 338 GPGPGPGPGPGPGPGPGPGPGHSMRLPVP 366
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 29.3 bits (64), Expect = 2.4
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 142 PRMGASGHSPPGGPGKGQWPAPGEDGGHASQQQMP 176
P+ G H PP PGK + P P GG+ SQ P
Sbjct: 125 PQGGNQSHRPPPPPGKPERPPP--QGGNQSQGPPP 157
Score = 28.1 bits (61), Expect = 5.5
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 142 PRMGASGHSPPGGPGKGQWPAPGEDGGHASQQQMPDLPE 180
P+ G PP PGK + P P E S + P P+
Sbjct: 146 PQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQ 184
Score = 27.3 bits (59), Expect = 9.3
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 142 PRMGASGHSPPGGPGKGQWPAPGEDGGHASQ--QQMPDLPEKLSP 184
P+ G PP PGK + P P GG+ SQ P PE+ P
Sbjct: 83 PQGGNQSQGPPPHPGKPERPPP--QGGNQSQGTPPPPGKPERPPP 125
Score = 27.3 bits (59), Expect = 9.3
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 140 GEPRMGASGHSPPGGPGKGQWPAPGEDGGHASQQQMPDLPEKLSPSFTPAHLHPCR 195
G P+ + P PGK Q P P GG+ Q Q P + P P P R
Sbjct: 185 GPPQQEGNKPQGPPPPGKPQGPPPA--GGNPQQPQAPPAGKPQGPPPPPQGGRPPR 238
>gi|6631075 BCL2-associated athanogene 4 [Homo sapiens]
Length = 457
Score = 29.3 bits (64), Expect = 2.4
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 145 GASGHSPPGGPGKGQWPAPGEDGGHASQQQMPDLP 179
G G+ P GG WP PG GG S Q+ P P
Sbjct: 68 GGDGYYPSGGA----WPEPGRAGG--SHQEQPPYP 96
>gi|42560248 POU domain, class 5, transcription factor 1 isoform 1
[Homo sapiens]
Length = 360
Score = 28.9 bits (63), Expect = 3.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 141 EPRMGASGHSPPGGPGKGQWPAPGED 166
+PR S PPGGPG G PG +
Sbjct: 31 DPRTWLSFQGPPGGPGIGPGVGPGSE 56
>gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo
sapiens]
Length = 2923
Score = 28.9 bits (63), Expect = 3.2
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 149 HSPP--GGPGKGQWPAPGEDGGHASQQQMPDLPEK 181
HS P GGPG G+ P PG+ G A + PE+
Sbjct: 2775 HSTPKDGGPGPGKAPWPGDFGTTAKESSGNGAPEE 2809
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 28.5 bits (62), Expect = 4.2
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 145 GASGHSPPGGPGKGQWP---APGEDGG-HASQQQMPDLPEKLSPSFTPAHLHPCRRLCEA 200
G G + PG P + + P A G G HAS P LP L P P R CEA
Sbjct: 103 GYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPP---AAPRRCEA 159
Query: 201 RTLPP 205
P
Sbjct: 160 APATP 164
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 28.5 bits (62), Expect = 4.2
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 145 GASGHSPPGGPGKGQWPAPGEDGGHASQQQMPDLPEKLSPS 185
G SGH PG PG + P + G A P P + PS
Sbjct: 186 GTSGH--PGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPS 224
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,736,181
Number of Sequences: 37866
Number of extensions: 533807
Number of successful extensions: 2692
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2567
Number of HSP's gapped (non-prelim): 157
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.