Guide to the Human Genome
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Name: C16orf13 Sequence: fasta or formatted (205aa) NCBI GI: 93102391
Description:

hypothetical protein LOC84326 isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {204aa} hypothetical protein LOC84326 isoform a
alt prot {107aa} hypothetical protein LOC84326 isoform c
alt prot {127aa} hypothetical protein LOC84326 isoform d
alt prot {185aa} hypothetical protein LOC84326 isoform g
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         24           4
 C cysteine            2.4          5           1
 D aspartate           4.4          9           1
 E glutamate           4.4          9           1
 F phenylalanine       2.0          4           1
 G glycine             9.3         19           2
 H histidine           5.4         11           1
 I isoleucine          2.4          5           1
 K lysine              2.4          5           1
 L leucine            12.7         26           3
 M methionine          2.0          4           1
 N asparagine          1.5          3           1
 P proline            10.2         21           2
 Q glutamine           5.9         12           3
 R arginine            6.3         13           2
 S serine              5.4         11           1
 T threonine           3.9          8           2
 V valine              4.4          9           1
 W tryptophan          2.4          5           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84326 isoform b 
C16orf13              0.875   hypothetical protein LOC84326 isoform g 
C16orf13              0.647   hypothetical protein LOC84326 isoform a 
C16orf13              0.267   hypothetical protein LOC84326 isoform d 
C16orf13              0.267   hypothetical protein LOC84326 isoform c 
C9orf75               0.020   hypothetical protein LOC286262 isoform 2 
C9orf75               0.020   hypothetical protein LOC286262 isoform 1 
PACS1                 0.020   phosphofurin acidic cluster sorting protein 1 
FHOD1                 0.020   formin homology 2 domain containing 1 
ACCN1                 0.017   amiloride-sensitive cation channel 1, neuronal isofo...
TACC2                 0.017   transforming, acidic coiled-coil containing protein...
WDR33                 0.015   WD repeat domain 33 isoform 1 
LOC100292339          0.012   PREDICTED: hypothetical protein 
LOC100288937          0.012   PREDICTED: hypothetical protein XP_002343343 
SYN3                  0.012   synapsin III isoform IIIg 
SYN3                  0.012   synapsin III isoform IIIa 
MEX3D                 0.012   ring finger and KH domain containing 1 
WIPF1                 0.012   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.012   WAS/WASL interacting protein family, member 1 
C16orf59              0.012   hypothetical protein LOC80178 
HOXD4                 0.010   homeobox D4 
FNDC1                 0.010   fibronectin type III domain containing 1 
DGKD                  0.010   diacylglycerol kinase, delta 130kDa isoform 2 
RBM27                 0.010   RNA binding motif protein 27 
PRB4                  0.010   proline-rich protein BstNI subfamily 4 precursor [Ho...
BAG4                  0.010   BCL2-associated athanogene 4 
POU5F1                0.010   POU domain, class 5, transcription factor 1 isoform ...
CELSR2                0.010   cadherin EGF LAG seven-pass G-type receptor 2 
HOXA4                 0.007   homeobox A4 
COL3A1                0.007   collagen type III alpha 1 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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