Guide to the Human Genome
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Name: C16orf13 Sequence: fasta or formatted (185aa) NCBI GI: 93102401
Description:

hypothetical protein LOC84326 isoform g

Not currently referenced in the text

Other entries for this name:
alt prot {204aa} hypothetical protein LOC84326 isoform a
alt prot {205aa} hypothetical protein LOC84326 isoform b
alt prot {107aa} hypothetical protein LOC84326 isoform c
alt prot {127aa} hypothetical protein LOC84326 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         21           4
 C cysteine            2.7          5           1
 D aspartate           4.9          9           1
 E glutamate           4.9          9           2
 F phenylalanine       1.6          3           1
 G glycine             8.6         16           2
 H histidine           5.4         10           1
 I isoleucine          2.2          4           1
 K lysine              2.2          4           1
 L leucine            11.4         21           3
 M methionine          2.2          4           1
 N asparagine          1.6          3           1
 P proline            10.8         20           2
 Q glutamine           6.5         12           3
 R arginine            5.9         11           2
 S serine              5.9         11           1
 T threonine           3.8          7           2
 V valine              4.9          9           1
 W tryptophan          2.7          5           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84326 isoform g 
C16orf13              0.967   hypothetical protein LOC84326 isoform b 
C16orf13              0.610   hypothetical protein LOC84326 isoform a 
C16orf13              0.295   hypothetical protein LOC84326 isoform d 
C16orf13              0.295   hypothetical protein LOC84326 isoform c 
SREBF1                0.024   sterol regulatory element binding transcription fact...
SREBF1                0.024   sterol regulatory element binding transcription fact...
PACS1                 0.022   phosphofurin acidic cluster sorting protein 1 
FHOD1                 0.022   formin homology 2 domain containing 1 
FOXB2                 0.019   forkhead box B2 
C9orf75               0.019   hypothetical protein LOC286262 isoform 2 
COL23A1               0.019   collagen, type XXIII, alpha 1 
TACC2                 0.019   transforming, acidic coiled-coil containing protein...
C9orf75               0.019   hypothetical protein LOC286262 isoform 1 
SYN3                  0.016   synapsin III isoform IIIg 
SYN3                  0.016   synapsin III isoform IIIa 
ETV5                  0.016   ets variant gene 5 (ets-related molecule) 
CEND1                 0.016   cell cycle exit and neuronal differentiation 1 [Homo...
LOC100292292          0.016   PREDICTED: hypothetical protein 
LOC100291384          0.016   PREDICTED: hypothetical protein XP_002347156 
LOC100287578          0.016   PREDICTED: hypothetical protein XP_002343004 
CADPS2                0.016   Ca2+-dependent activator protein for secretion 2 is...
CADPS2                0.016   Ca2+-dependent activator protein for secretion 2 is...
COL14A1               0.016   collagen, type XIV, alpha 1 
MEX3D                 0.014   ring finger and KH domain containing 1 
WDR33                 0.014   WD repeat domain 33 isoform 1 
FNDC1                 0.011   fibronectin type III domain containing 1 
DGKD                  0.011   diacylglycerol kinase, delta 130kDa isoform 2 
RBM27                 0.011   RNA binding motif protein 27 
PRB4                  0.011   proline-rich protein BstNI subfamily 4 precursor [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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